Best TWAS P=4.51e-08 · Best GWAS P=1.07e-06 conditioned to 1e+00
Tissue | Gene | RNA modality | RNA phenotype | h2 | # weights | Model R2 | Model R2 P | TWAS Z | TWAS P | Coloc P | Joint |
---|---|---|---|---|---|---|---|---|---|---|---|
Brain | G2e3 | alternative TSS | XM_017594083.2 | 0.05 | 1570 | 0.02 | 3.0e-03 | 5.39 | 7.09e-08 | 0.44 | FALSE |
Brain | G2e3 | gene expression | G2e3 | 0.29 | 7 | 0.17 | 1.1e-15 | -5.39 | 6.98e-08 | 0.7 | TRUE |
Brain | Coch | isoform ratio | NM_001108710.2 | 0.07 | 34 | 0.03 | 6.9e-04 | 5.34 | 9.49e-08 | 0.42 | TRUE |
Brain | Coch | isoform ratio | XM_017594223.2 | 0.07 | 34 | 0.03 | 7.8e-04 | -5.31 | 1.09e-07 | 0.42 | FALSE |
Brain | Hectd1 | mRNA stability | Hectd1 | 0.06 | 1834 | 0.03 | 3.8e-04 | -5.23 | 1.67e-07 | 0.37 | FALSE |
IL | G2e3 | gene expression | G2e3 | 0.23 | 15 | 0.1 | 2.0e-03 | -5.39 | 7.21e-08 | 0.35 | FALSE |
Liver | Heatr5a | intron excision ratio | chr6_69410541_69419682 | 0.06 | 1753 | 0.04 | 3.2e-05 | -5.17 | 2.29e-07 | 0.59 | FALSE |
NAcc | LOC120103533 | gene expression | LOC120103533 | 0.48 | 429 | 0.5 | 4.2e-66 | 5.29 | 1.23e-07 | 0.28 | FALSE |
NAcc | Coch | mRNA stability | Coch | 0.07 | 4 | 0.05 | 8.7e-07 | 5.47 | 4.51e-08 | 0.56 | TRUE |
PL | G2e3 | gene expression | G2e3 | 0.19 | 1570 | 0.15 | 2.1e-16 | -5.23 | 1.67e-07 | 0.64 | TRUE |
PL | Nubpl | mRNA stability | Nubpl | 0.07 | 22 | 0.06 | 1.2e-07 | -5.37 | 7.86e-08 | 0.16 | FALSE |