Best TWAS P=3.81e-08 · Best GWAS P=1.07e-06 conditioned to 2.23e-01
Tissue | Gene | RNA modality | RNA phenotype | h2 | # weights | Model R2 | Model R2 P | TWAS Z | TWAS P | Coloc P | Joint |
---|---|---|---|---|---|---|---|---|---|---|---|
BLA | G2e3 | gene expression | ENSRNOG00000004232 | 0.12 | 1570 | 0.06 | 6.3e-04 | -5.33 | 9.77e-08 | 0.63 | FALSE |
BLA | Hectd1 | gene expression | ENSRNOG00000006905 | 0.06 | 1835 | 0.04 | 3.9e-03 | -5.33 | 1.01e-07 | 0.39 | FALSE |
BLA | Scfd1 | mRNA stability | ENSRNOG00000031203 | 0.33 | 6 | 0.23 | 8.6e-13 | 5.16 | 2.45e-07 | 0.33 | FALSE |
Brain | Hectd1 | mRNA stability | ENSRNOG00000006905 | 0.05 | 1835 | 0.02 | 4.8e-03 | -5.27 | 1.39e-07 | 0.38 | FALSE |
LHb | Heatr5a | gene expression | ENSRNOG00000006483 | 0.18 | 1750 | 0.14 | 3.7e-04 | -5.2 | 1.97e-07 | 0.5 | FALSE |
Liver | Scfd1 | mRNA stability | ENSRNOG00000031203 | 0.1 | 1615 | 0.06 | 5.3e-07 | -5.13 | 2.89e-07 | 0.45 | FALSE |
NAcc | G2e3 | gene expression | ENSRNOG00000004232 | 0.12 | 13 | 0.1 | 8.0e-08 | -5.5 | 3.81e-08 | 0.65 | TRUE |
NAcc | Hectd1 | intron excision ratio | chr6:69206174:69209504 | 0.04 | 1833 | 0.03 | 1.6e-03 | -5.12 | 3.09e-07 | 0.47 | FALSE |
OFC | G2e3 | gene expression | ENSRNOG00000004232 | 0.55 | 5 | 0.17 | 8.2e-05 | -5.42 | 6.10e-08 | 0.52 | FALSE |
PL | G2e3 | gene expression | ENSRNOG00000004232 | 0.23 | 1569 | 0.21 | 1.2e-15 | -5.4 | 6.73e-08 | 0.65 | FALSE |