Best TWAS P=3.12e-09 · Best GWAS P=4.05e-09 conditioned to 1.00e+00
Tissue | Gene | RNA modality | RNA phenotype | h2 | # weights | Model R2 | Model R2 P | TWAS Z | TWAS P | Coloc P | Joint |
---|---|---|---|---|---|---|---|---|---|---|---|
Adipose | Tfdp2 | gene expression | ENSRNOG00000011241 | 0.52 | 158 | 0.48 | 1.1e-60 | 5.12 | 3.08e-07 | 0.78 | FALSE |
Adipose | Trpc1 | intron excision ratio | chr8:96280099:96282351 | 0.04 | 2008 | 0.02 | 1.1e-03 | 5.78 | 7.35e-09 | 0.72 | FALSE |
BLA | Tfdp2 | gene expression | ENSRNOG00000011241 | 0.08 | 5 | 0.08 | 5.4e-05 | 5.51 | 3.49e-08 | 0.64 | FALSE |
BLA | Tfdp2 | isoform ratio | ENSRNOT00000081204 | 0.08 | 1 | 0.05 | 8.7e-04 | -5.81 | 6.38e-09 | 0.37 | FALSE |
BLA | Trpc1 | intron excision ratio | chr8:96280099:96282351 | 0.06 | 2010 | 0.05 | 1.2e-03 | 5.66 | 1.51e-08 | 0.68 | FALSE |
Brain | Atp1b3 | gene expression | ENSRNOG00000011501 | 0.08 | 9 | 0.05 | 1.2e-05 | 5.22 | 1.79e-07 | 0.61 | FALSE |
Brain | Tfdp2 | isoform ratio | ENSRNOT00000081204 | 0.04 | 1 | 0.03 | 7.3e-04 | -5.3 | 1.16e-07 | 0.05 | FALSE |
Brain | Atp1b3 | intron excision ratio | chr8:96922523:96941339 | 0.05 | 1 | 0.05 | 3.3e-05 | -5.32 | 1.06e-07 | 0.22 | FALSE |
Brain | Trpc1 | intron excision ratio | chr8:96280099:96280911 | 0.13 | 1 | 0.07 | 2.1e-07 | -5.83 | 5.57e-09 | 0.91 | FALSE |
Brain | Trpc1 | intron excision ratio | chr8:96280099:96282351 | 0.15 | 148 | 0.15 | 1.2e-13 | 5.93 | 3.12e-09 | 0.84 | TRUE |
Brain | Trpc1 | intron excision ratio | chr8:96280967:96282351 | 0.11 | 1 | 0.06 | 7.2e-06 | -5.3 | 1.16e-07 | 0.38 | FALSE |
Brain | Pls1 | mRNA stability | ENSRNOG00000009945 | 0.18 | 1 | 0.15 | 7.8e-14 | -5.68 | 1.36e-08 | 0.82 | FALSE |
Brain | Gk5 | mRNA stability | ENSRNOG00000010942 | 0.1 | 1867 | 0.08 | 1.0e-07 | 5.57 | 2.62e-08 | 0.62 | FALSE |
Brain | Atp1b3 | mRNA stability | ENSRNOG00000011501 | 0.37 | 25 | 0.34 | 4.5e-32 | 5.26 | 1.47e-07 | 0.58 | FALSE |
Brain | Trpc1 | mRNA stability | ENSRNOG00000054902 | 0.13 | 29 | 0.1 | 7.3e-10 | 5.28 | 1.29e-07 | 0.69 | FALSE |
LHb | PCOLCE2 | gene expression | ENSRNOG00000046848 | 0.44 | 1 | 0.22 | 5.3e-06 | 5.16 | 2.41e-07 | 0.08 | FALSE |
Liver | Zbtb38 | alternative polyA | ENSRNOT00000097273 | 0.03 | 1 | 0.02 | 1.7e-03 | 5.27 | 1.34e-07 | 0.35 | TRUE |
Liver | PCOLCE2 | gene expression | ENSRNOG00000046848 | 0.1 | 1 | 0.09 | 1.2e-09 | 5.53 | 3.25e-08 | 0.81 | FALSE |
Liver | Trpc1 | gene expression | ENSRNOG00000054902 | 0.1 | 92 | 0.08 | 2.2e-09 | 5.26 | 1.45e-07 | 0.76 | FALSE |
Liver | Pls1 | mRNA stability | ENSRNOG00000009945 | 0.02 | 1970 | 0.02 | 4.4e-03 | -5.56 | 2.64e-08 | 0.45 | FALSE |
Liver | Atp1b3 | mRNA stability | ENSRNOG00000011501 | 0.07 | 1 | 0.08 | 6.5e-09 | 5.17 | 2.34e-07 | 0.22 | FALSE |
NAcc | Trpc1 | intron excision ratio | chr8:96280099:96282351 | 0.09 | 1 | 0.07 | 6.2e-06 | 5.3 | 1.16e-07 | 0.19 | FALSE |
NAcc | Pls1 | mRNA stability | ENSRNOG00000009945 | 0.07 | 59 | 0.05 | 1.2e-04 | -5.38 | 7.63e-08 | 0.66 | FALSE |
PL | Gk5 | gene expression | ENSRNOG00000010942 | 0.39 | 1862 | 0.15 | 8.6e-12 | 5.6 | 2.08e-08 | 0.67 | FALSE |
PL | Atp1b3 | mRNA stability | ENSRNOG00000011501 | 0.1 | 1718 | 0.11 | 7.0e-09 | 5.38 | 7.53e-08 | 0.69 | FALSE |