Best TWAS P=1.17e-09 · Best GWAS P=4.05e-09 conditioned to 1.00e+00
| Tissue | Gene | RNA modality | RNA phenotype | h2 | # weights | Model R2 | Model R2 P | TWAS Z | TWAS P | Coloc P | Joint |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Adipose | Trpc1 | intron excision ratio | chr8_96280099_96282351 | 0.04 | 2010 | 0.03 | 1.5e-04 | 5.84 | 5.29e-09 | 0.76 | FALSE |
| BLA | Xrn1 | alternative TSS | NM_001305240.1 | 0.08 | 1 | 0.02 | 1.9e-02 | 5.24 | 1.61e-07 | 0.04 | FALSE |
| BLA | Trpc1 | intron excision ratio | chr8_96280099_96282351 | 0.07 | 1 | 0.06 | 6.9e-04 | -5.3 | 1.16e-07 | 0.06 | FALSE |
| BLA | Atp1b3 | mRNA stability | Atp1b3 | 0.07 | 1 | 0.08 | 7.3e-05 | -5.56 | 2.71e-08 | 0.13 | FALSE |
| Brain | Tfdp2 | alternative TSS | XM_039081179.1 | 0.03 | 1808 | 0.01 | 1.4e-02 | 5.27 | 1.35e-07 | 0.56 | FALSE |
| Brain | Tfdp2 | gene expression | Tfdp2 | 0.16 | 29 | 0.19 | 2.3e-17 | 5.21 | 1.85e-07 | 0.73 | FALSE |
| Brain | Trpc1 | intron excision ratio | chr8_96280099_96280911 | 0.13 | 2015 | 0.1 | 2.1e-09 | -5.89 | 3.81e-09 | 0.84 | FALSE |
| Brain | Trpc1 | intron excision ratio | chr8_96280099_96282351 | 0.18 | 261 | 0.17 | 2.6e-15 | -5.95 | 2.66e-09 | 0.84 | FALSE |
| Brain | Atp1b3 | mRNA stability | Atp1b3 | 0.46 | 22 | 0.43 | 4.6e-43 | 5.34 | 9.50e-08 | 0.5 | FALSE |
| Brain | Pls1 | mRNA stability | Pls1 | 0.18 | 1938 | 0.14 | 5.0e-13 | -6.08 | 1.17e-09 | 0.76 | TRUE |
| Brain | Trpc1 | mRNA stability | Trpc1 | 0.14 | 2015 | 0.12 | 7.9e-11 | 5.26 | 1.46e-07 | 0.7 | FALSE |
| Liver | PCOLCE2 | gene expression | PCOLCE2 | 0.09 | 1 | 0.08 | 2.4e-09 | -5.53 | 3.25e-08 | 0.81 | FALSE |
| NAcc | Trpc1 | intron excision ratio | chr8_96280099_96280911 | 0.07 | 2015 | 0.09 | 3.2e-10 | -5.27 | 1.33e-07 | 0.57 | FALSE |
| NAcc | Trpc1 | intron excision ratio | chr8_96280099_96282351 | 0.12 | 2015 | 0.11 | 2.0e-12 | 5.93 | 2.94e-09 | 0.78 | FALSE |
| NAcc | Trpc1 | intron excision ratio | chr8_96280967_96282351 | 0.12 | 6 | 0.15 | 1.6e-16 | -5.69 | 1.23e-08 | 0.82 | FALSE |
| NAcc | Atp1b3 | mRNA stability | Atp1b3 | 0.11 | 32 | 0.14 | 2.0e-15 | 5.35 | 8.97e-08 | 0.79 | FALSE |
| NAcc | Pls1 | mRNA stability | Pls1 | 0.08 | 1 | 0.05 | 4.6e-06 | 5.24 | 1.61e-07 | 0.24 | TRUE |
| NAcc | Trpc1 | mRNA stability | Trpc1 | 0.04 | 1 | 0.04 | 2.0e-05 | -5.24 | 1.61e-07 | 0.11 | FALSE |
| OFC | U2surp | alternative polyA | XM_002729954.6 | 0.28 | 2064 | 0.03 | 7.2e-02 | -5.31 | 1.10e-07 | 0.36 | FALSE |
| PL | Tfdp2 | alternative polyA | NM_001106847.2 | 0.16 | 39 | 0.19 | 8.8e-21 | 5.44 | 5.33e-08 | 0.65 | FALSE |
| PL | Tfdp2 | alternative polyA | XM_017595585.2 | 0.16 | 28 | 0.18 | 1.2e-19 | -5.37 | 8.05e-08 | 0.66 | FALSE |
| PL | Atp1b3 | mRNA stability | Atp1b3 | 0.13 | 1 | 0.18 | 1.3e-19 | -5.56 | 2.71e-08 | 0.69 | FALSE |
| pVTA | Tfdp2 | isoform ratio | NM_001106847.2 | 0.07 | 1 | 0.05 | 2.7e-03 | 5.52 | 3.37e-08 | 0.05 | FALSE |
| pVTA | Trpc1 | intron excision ratio | chr8_96280099_96282351 | 0.14 | 1 | 0.1 | 3.0e-05 | -5.3 | 1.16e-07 | 0.11 | FALSE |
| RMTg | PCOLCE2 | gene expression | PCOLCE2 | 0.18 | 9 | 0.12 | 3.7e-04 | 5.51 | 3.59e-08 | 0.71 | TRUE |
| RMTg | Pls1 | gene expression | Pls1 | 0.24 | 1938 | 0.18 | 1.3e-05 | -5.54 | 3.00e-08 | 0.61 | FALSE |