Best TWAS P=1.63e-08 · Best GWAS P=1.47e-08 conditioned to 1.00e+00
Tissue | Gene | RNA modality | RNA phenotype | h2 | # weights | Model R2 | Model R2 P | TWAS Z | TWAS P | Coloc P | Joint |
---|---|---|---|---|---|---|---|---|---|---|---|
Adipose | Qrfpr | gene expression | Qrfpr | 0.26 | 8 | 0.14 | 2.2e-15 | -5.3 | 1.14e-07 | 0.58 | FALSE |
BLA | Qrfpr | gene expression | Qrfpr | 0.36 | 1 | 0.21 | 2.2e-11 | -5.39 | 6.94e-08 | 0.41 | FALSE |
Brain | Dcun1d1 | alternative polyA | XM_006232262.4 | 0.11 | 2149 | 0.04 | 4.6e-05 | -5.3 | 1.14e-07 | 0.54 | FALSE |
Brain | Dcun1d1 | alternative polyA | XM_006232263.4 | 0.1 | 2149 | 0.04 | 4.6e-05 | 5.18 | 2.19e-07 | 0.54 | FALSE |
Brain | Mccc1 | alternative polyA | XM_039101988.1 | 0.04 | 2263 | 0.03 | 1.3e-03 | -5.6 | 2.20e-08 | 0.49 | FALSE |
Brain | Mccc1 | alternative polyA | XM_039101989.1 | 0.04 | 2263 | 0.03 | 1.3e-03 | 5.59 | 2.24e-08 | 0.48 | FALSE |
Brain | Qrfpr | gene expression | Qrfpr | 0.7 | 50 | 0.64 | 1.5e-77 | 5.49 | 3.96e-08 | 0.57 | FALSE |
Brain | Dcun1d1 | isoform ratio | XM_006232262.4 | 0.05 | 1 | 0.02 | 6.7e-03 | 5.36 | 8.39e-08 | 0.04 | FALSE |
Brain | Mccc1 | isoform ratio | XM_039101989.1 | 0.04 | 2263 | 0.02 | 2.6e-03 | 5.57 | 2.57e-08 | 0.5 | FALSE |
Brain | Trpc3 | intron excision ratio | chr2_119485307_119496374 | 0.04 | 1936 | 0.02 | 4.6e-03 | 5.32 | 1.03e-07 | 0.52 | FALSE |
Brain | Trpc3 | intron excision ratio | chr2_119485307_119499985 | 0.13 | 1936 | 0.1 | 1.0e-09 | -5.27 | 1.39e-07 | 0.42 | FALSE |
Brain | Qrfpr | mRNA stability | Qrfpr | 0.4 | 14 | 0.28 | 2.9e-26 | 5.53 | 3.14e-08 | 0.57 | FALSE |
Eye | Dcun1d1 | alternative TSS | NM_001395100.1 | 0.34 | 1 | 0.13 | 5.7e-03 | 5.5 | 3.72e-08 | 0.06 | FALSE |
Liver | Atp11b | alternative polyA | XM_039103613.1 | 0.04 | 6 | 0 | 1.4e-01 | -5.48 | 4.23e-08 | 0.41 | FALSE |
Liver | Atp11b | alternative polyA | XM_039103615.1 | 0.04 | 5 | 0.01 | 7.9e-02 | 5.49 | 4.12e-08 | 0.45 | FALSE |
Liver | Atp11b | alternative polyA | XM_039103613.1 | 0.03 | 1 | 0 | 1.5e-01 | -5.58 | 2.42e-08 | 0.03 | FALSE |
Liver | Atp11b | alternative polyA | XM_039103615.1 | 0.04 | 48 | 0 | 9.3e-02 | 5.42 | 6.12e-08 | 0.42 | FALSE |
Liver | Dcun1d1 | gene expression | Dcun1d1 | 0.1 | 2148 | 0.05 | 6.9e-06 | -5.5 | 3.80e-08 | 0.54 | FALSE |
Liver | Mccc1 | gene expression | Mccc1 | 0.35 | 2261 | 0.23 | 2.8e-25 | 5.35 | 8.76e-08 | 0.42 | FALSE |
Liver | Anxa5 | intron excision ratio | chr2_119326053_119327400 | 0.03 | 1 | 0.01 | 2.3e-02 | -5.49 | 3.98e-08 | 0.03 | FALSE |
Liver | Anxa5 | intron excision ratio | chr2_119327513_119329846 | 0.03 | 1 | -0 | 4.2e-01 | 5.49 | 3.98e-08 | 0.03 | FALSE |
Liver | Bbs7 | mRNA stability | Bbs7 | 0.09 | 2085 | 0.06 | 1.9e-07 | 5.27 | 1.37e-07 | 0.33 | FALSE |
NAcc | Mccc1 | alternative polyA | XM_039101988.1 | 0.03 | 1 | 0.01 | 1.1e-02 | 5.65 | 1.63e-08 | 0.04 | TRUE |
NAcc | Mccc1 | alternative polyA | XM_039101989.1 | 0.03 | 1 | 0.01 | 1.2e-02 | -5.65 | 1.63e-08 | 0.03 | FALSE |
NAcc | Atp11b | alternative TSS | XM_039103613.1 | 0.05 | 1 | 0.01 | 1.6e-02 | 5.57 | 2.49e-08 | 0.03 | FALSE |
NAcc | Atp11b | alternative TSS | XM_039103616.1 | 0.07 | 39 | 0.01 | 1.4e-02 | -5.24 | 1.57e-07 | 0.32 | FALSE |
NAcc | Bbs7 | gene expression | Bbs7 | 0.06 | 1 | 0.03 | 8.9e-05 | 5.42 | 5.95e-08 | 0.31 | FALSE |
NAcc | Atp11b | isoform ratio | XM_039103616.1 | 0.04 | 48 | 0.01 | 2.4e-02 | -5.57 | 2.52e-08 | 0.46 | FALSE |
NAcc | Mccc1 | isoform ratio | XM_039101989.1 | 0.04 | 1 | 0.01 | 6.5e-03 | -5.39 | 6.94e-08 | 0.03 | FALSE |
NAcc | Anxa5 | intron excision ratio | chr2_119326053_119327400 | 0.14 | 2372 | 0.1 | 4.4e-12 | 5.29 | 1.20e-07 | 0.24 | FALSE |
OFC | Qrfpr | gene expression | Qrfpr | 0.82 | 1 | 0.41 | 8.4e-11 | -5.46 | 4.77e-08 | 0.48 | FALSE |
PL | Mccc1 | alternative polyA | XM_039101988.1 | 0.08 | 1 | 0.06 | 1.3e-07 | 5.39 | 6.86e-08 | 0.36 | FALSE |
PL | Mccc1 | alternative polyA | XM_039101989.1 | 0.08 | 1 | 0.06 | 1.1e-07 | -5.39 | 6.86e-08 | 0.36 | FALSE |
PL | Atp11b | alternative TSS | XM_039103613.1 | 0.04 | 1834 | 0.02 | 3.9e-03 | -5.21 | 1.84e-07 | 0.59 | FALSE |
PL | Atp11b | alternative TSS | XM_039103616.1 | 0.04 | 1 | 0.02 | 6.6e-03 | -5.56 | 2.71e-08 | 0.04 | FALSE |
PL | Qrfpr | gene expression | Qrfpr | 0.55 | 2473 | 0.54 | 8.1e-70 | 5.53 | 3.15e-08 | 0.6 | FALSE |
PL | Atp11b | isoform ratio | XM_039103612.1 | 0.05 | 1 | 0.02 | 9.3e-04 | 5.56 | 2.71e-08 | 0.13 | FALSE |
PL | Atp11b | isoform ratio | XM_039103616.1 | 0.05 | 1 | 0.03 | 1.7e-04 | -5.56 | 2.71e-08 | 0.17 | FALSE |
PL | Mccc1 | isoform ratio | XM_039101989.1 | 0.09 | 1 | 0.07 | 3.6e-08 | -5.39 | 6.86e-08 | 0.36 | FALSE |
PL | Anxa5 | intron excision ratio | chr2_119326053_119327400 | 0.32 | 1 | 0.15 | 7.5e-16 | -5.37 | 7.93e-08 | 0.45 | FALSE |
PL | Qrfpr | mRNA stability | Qrfpr | 0.14 | 1 | 0.1 | 7.1e-11 | -5.43 | 5.57e-08 | 0.46 | FALSE |
pVTA | Anxa5 | intron excision ratio | chr2_119326053_119327400 | 0.19 | 208 | 0.18 | 4.3e-08 | -5.47 | 4.55e-08 | 0.42 | FALSE |