Best TWAS P=2.88e-13 · Best GWAS P=2.81e-13 conditioned to 3.92e-215
Tissue | Gene | RNA modality | RNA phenotype | h2 | # weights | Model R2 | Model R2 P | TWAS Z | TWAS P | Coloc P | Joint |
---|---|---|---|---|---|---|---|---|---|---|---|
Adipose | Ctsc | alternative polyA | ENSRNOT00000022342 | 0.16 | 2515 | 0.17 | 2.8e-18 | 5.46 | 4.80e-08 | 0 | FALSE |
Adipose | Ctsc | alternative polyA | ENSRNOT00000097085 | 0.17 | 2515 | 0.19 | 1.5e-20 | -5.63 | 1.85e-08 | 0.03 | FALSE |
Adipose | Ctsc | isoform ratio | ENSRNOT00000022342 | 0.16 | 2515 | 0.16 | 4.3e-17 | 5.72 | 1.07e-08 | 0.19 | FALSE |
Adipose | Ctsc | isoform ratio | ENSRNOT00000097085 | 0.18 | 2515 | 0.18 | 1.3e-19 | -5.85 | 4.94e-09 | 0.4 | FALSE |
Adipose | Ctsc | intron excision ratio | chr1:142031177:142036233 | 0.05 | 2515 | 0.04 | 6.5e-05 | -6.02 | 1.73e-09 | 0.6 | FALSE |
Adipose | Ctsc | intron excision ratio | chr1:142031177:142045569 | 0.04 | 2515 | 0.02 | 4.7e-03 | 5.74 | 9.28e-09 | 0.49 | FALSE |
BLA | Ctsc | alternative polyA | ENSRNOT00000022342 | 0.07 | 2518 | 0.01 | 5.1e-02 | 5.51 | 3.54e-08 | 0.2 | FALSE |
BLA | Ctsc | alternative polyA | ENSRNOT00000097085 | 0.07 | 2518 | 0.02 | 3.2e-02 | -5.3 | 1.16e-07 | 0.17 | FALSE |
BLA | Ctsc | gene expression | ENSRNOG00000016496 | 0.12 | 1 | 0.1 | 5.0e-06 | -5.9 | 3.71e-09 | 0.03 | FALSE |
BLA | Ctsc | mRNA stability | ENSRNOG00000016496 | 0.05 | 1 | 0.03 | 1.5e-02 | 7.17 | 7.49e-13 | 0.1 | FALSE |
Brain | Grm5 | gene expression | ENSRNOG00000016429 | 0.16 | 6 | 0.15 | 5.3e-14 | 6.24 | 4.50e-10 | 0.64 | FALSE |
Brain | Ctsc | gene expression | ENSRNOG00000016496 | 0.23 | 2518 | 0.31 | 4.5e-29 | -5.32 | 1.06e-07 | 0 | FALSE |
Brain | Ctsc | isoform ratio | ENSRNOT00000022342 | 0.03 | 1 | 0.04 | 1.7e-04 | 7.3 | 2.88e-13 | 0.7 | TRUE |
Eye | Ctsc | gene expression | ENSRNOG00000016496 | 0.29 | 1 | 0.15 | 2.9e-03 | -6.49 | 8.36e-11 | 0.06 | FALSE |
IL | Ctsc | gene expression | ENSRNOG00000016496 | 0.3 | 1 | 0.16 | 1.0e-04 | -6.65 | 2.83e-11 | 0.06 | FALSE |
NAcc | Ctsc | gene expression | ENSRNOG00000016496 | 0.12 | 2516 | 0.12 | 3.3e-09 | -6.16 | 7.41e-10 | 0.46 | FALSE |
PL | Ctsc | gene expression | ENSRNOG00000016496 | 0.14 | 87 | 0.13 | 8.2e-10 | -5.62 | 1.94e-08 | 0.66 | FALSE |
PL | Grm5 | mRNA stability | ENSRNOG00000016429 | 0.04 | 1 | 0.03 | 1.3e-03 | -7.19 | 6.68e-13 | 0.06 | FALSE |