Hub : Traits : Se content in liver : ← : →

chr1:231,783,442-236,943,873

Trait: Se content in liver

Best TWAS P=4.02e-10 · Best GWAS P=1.00e-08 conditioned to 4.77e-01

Associated models

Tissue	Gene	RNA modality	RNA phenotype	h2	# weights	Model R2	Model R2 P	TWAS Z	TWAS P	Coloc P	Joint
Adipose	Lgi1	gene expression	ENSRNOG00000014758	0.03	1	0.01	6.3e-02	5.46	4.68e-08	0.04	FALSE
Adipose	Pde6c	gene expression	ENSRNOG00000016593	0.11	2325	0.15	1.0e-16	-5.39	6.87e-08	0.58	FALSE
Adipose	Cyp26a1	gene expression	ENSRNOG00000016750	0.04	2508	0.01	1.5e-02	-5.35	8.86e-08	0.37	FALSE
Adipose	Btaf1	gene expression	ENSRNOG00000017938	0.1	1	0.05	3.4e-06	-5.19	2.12e-07	0.1	FALSE
Adipose	Exoc6	gene expression	ENSRNOG00000036601	0.13	164	0.08	1.4e-09	5.1	3.41e-07	0.21	FALSE
Adipose	Fra10ac1	intron excision ratio	chr1:235969436:235970456	0.03	2317	0.01	1.2e-02	-5.42	6.08e-08	0.55	FALSE
Adipose	Hhex	mRNA stability	ENSRNOG00000016595	0.02	2105	0.01	5.7e-02	-5.66	1.53e-08	0.24	FALSE
Adipose	Marchf5	mRNA stability	ENSRNOG00000017396	0.05	1	0.04	2.5e-05	5.6	2.14e-08	0.33	FALSE
Adipose	Cpeb3	mRNA stability	ENSRNOG00000020689	0.07	1713	0.06	3.1e-07	5.35	8.96e-08	0.57	FALSE
Adipose	Hectd2	mRNA stability	ENSRNOG00000056753	0.03	2247	0.02	2.8e-03	5.39	6.93e-08	0.19	FALSE
BLA	Plce1	gene expression	ENSRNOG00000014276	0.12	20	0.07	9.2e-05	-5.46	4.72e-08	0.45	FALSE
BLA	Myof	gene expression	ENSRNOG00000016117	0.08	2288	0.06	2.3e-04	-5.49	4.10e-08	0.48	FALSE
BLA	Marchf5	gene expression	ENSRNOG00000017396	0.22	41	0.2	3.9e-11	5.55	2.93e-08	0.55	FALSE
BLA	Btaf1	isoform ratio	ENSRNOT00000024465	0.07	1	0.05	1.3e-03	5.3	1.14e-07	0.04	FALSE
BLA	Ffar4	mRNA stability	ENSRNOG00000021763	0.13	2317	0.07	8.4e-05	-5.16	2.51e-07	0.24	FALSE
Brain	Cpeb3	alternative TSS	ENSRNOT00000047387	0.04	1	0.04	8.9e-05	-5.61	2.00e-08	0.08	FALSE
Brain	Cpeb3	alternative TSS	ENSRNOT00000114370	0.04	1	0.04	1.2e-04	5.61	2.00e-08	0.07	FALSE
Brain	Myof	gene expression	ENSRNOG00000016117	0.13	2288	0.17	1.3e-15	-5.34	9.37e-08	0.08	FALSE
Brain	Cyp26a1	gene expression	ENSRNOG00000016750	0.07	1	0.08	7.9e-08	-5.38	7.30e-08	0.34	FALSE
Brain	Ide	gene expression	ENSRNOG00000016833	0.05	1979	0.03	1.2e-03	5.84	5.27e-09	0.49	FALSE
Brain	Marchf5	gene expression	ENSRNOG00000017396	0.27	1	0.27	3.6e-25	5.61	2.00e-08	0.59	FALSE
Brain	Ankrd1	gene expression	ENSRNOG00000018598	0.06	2408	0.04	9.1e-05	5.41	6.48e-08	0.23	FALSE
Brain	ENSRNOG00000067881	gene expression	ENSRNOG00000067881	0.05	1	0.04	1.4e-04	5.29	1.20e-07	0.14	FALSE
Brain	Pank1	isoform ratio	ENSRNOT00000100218	0.21	1	0.17	3.0e-15	5.22	1.80e-07	0.44	FALSE
Brain	Tnks2	isoform ratio	ENSRNOT00000079808	0.17	1	0.2	2.4e-18	5.3	1.14e-07	0.18	FALSE
Brain	Tnks2	isoform ratio	ENSRNOT00000085497	0.17	1	0.2	6.9e-18	-5.3	1.14e-07	0.18	FALSE
Brain	Tnks2	intron excision ratio	chr1:234602539:234606928	0.11	1	0.15	2.1e-13	-5.3	1.14e-07	0.18	FALSE
Brain	Tnks2	intron excision ratio	chr1:234603939:234606928	0.06	2036	0.04	1.2e-04	5.66	1.55e-08	0.33	FALSE
Brain	Hectd2	intron excision ratio	chr1:234328907:234331775	0.05	2248	0.01	1.6e-02	5.86	4.73e-09	0.37	FALSE
Brain	Lgi1	mRNA stability	ENSRNOG00000014758	0.05	77	0.01	1.5e-02	5.23	1.73e-07	0.3	FALSE
Brain	Btaf1	mRNA stability	ENSRNOG00000017938	0.13	2	0.11	1.4e-10	5.68	1.34e-08	0.28	FALSE
Brain	Pcgf5	mRNA stability	ENSRNOG00000018532	0.04	12	0.01	1.8e-02	-5.41	6.41e-08	0.38	FALSE
Eye	Cpeb3	gene expression	ENSRNOG00000020689	0.37	1	0.21	4.1e-04	5.6	2.14e-08	0.06	FALSE
Eye	Rpp30	intron excision ratio	chr1:233787542:233789135	0.43	1	0.14	3.2e-03	5.26	1.47e-07	0.06	FALSE
Eye	Cpeb3	mRNA stability	ENSRNOG00000020689	0.35	1	0.3	1.5e-05	5.6	2.14e-08	0.06	FALSE
IL	Cyp26a1	gene expression	ENSRNOG00000016750	0.31	2500	0.21	9.5e-06	-5.73	1.01e-08	0.42	FALSE
IL	Marchf5	gene expression	ENSRNOG00000017396	0.21	5	0.07	7.4e-03	6.07	1.24e-09	0.39	FALSE
IL	Ffar4	gene expression	ENSRNOG00000021763	0.2	2310	0.18	3.9e-05	5.46	4.70e-08	0.28	FALSE
IL	Cyp26c1	gene expression	ENSRNOG00000030698	0.15	2493	0.08	5.2e-03	-5.41	6.29e-08	0.29	FALSE
IL	Rpp30	intron excision ratio	chr1:233797153:233804206	0.31	1	0.21	7.3e-06	5.29	1.20e-07	0.06	FALSE
LHb	Htr7	gene expression	ENSRNOG00000018827	0.18	1	0.15	2.7e-04	5.31	1.09e-07	0.06	FALSE
LHb	Slc35g1	gene expression	ENSRNOG00000029740	0.17	12	0.06	1.5e-02	-5.21	1.93e-07	0.32	FALSE
LHb	Exoc6	gene expression	ENSRNOG00000036601	0.14	2289	0.06	1.8e-02	-5.64	1.72e-08	0.39	FALSE
LHb	Tnks2	gene expression	ENSRNOG00000052664	0.25	2029	0.23	3.7e-06	5.35	8.74e-08	0.54	FALSE
LHb	Hectd2	gene expression	ENSRNOG00000056753	0.25	3	0.09	4.7e-03	5.31	1.12e-07	0.26	FALSE
LHb	Slc35g1	mRNA stability	ENSRNOG00000029740	0.2	1	0.15	2.5e-04	-5.46	4.79e-08	0.06	FALSE
Liver	Ppp1r3c	alternative polyA	ENSRNOT00000024941	0.06	1	0.07	5.5e-08	-5.67	1.45e-08	0.58	FALSE
Liver	Ppp1r3c	alternative polyA	ENSRNOT00000107925	0.08	1	0.08	4.2e-09	5.67	1.45e-08	0.59	FALSE
Liver	Myof	gene expression	ENSRNOG00000016117	0.03	1	0.01	3.1e-02	-5.59	2.32e-08	0.04	FALSE
Liver	Ppp1r3c	gene expression	ENSRNOG00000018494	0.03	1	0.02	2.7e-03	-5.18	2.17e-07	0.03	FALSE
Liver	Exoc6	gene expression	ENSRNOG00000036601	0.06	1	0.05	2.6e-06	5.52	3.37e-08	0.44	FALSE
Liver	Ppp1r3c	isoform ratio	ENSRNOT00000024941	0.03	21	0.03	8.3e-04	-5.67	1.45e-08	0.48	FALSE
Liver	Tnks2	isoform ratio	ENSRNOT00000079808	0.02	1	0.01	7.6e-03	5.19	2.12e-07	0.03	FALSE
Liver	Marchf5	mRNA stability	ENSRNOG00000017396	0.05	1	0.02	1.7e-03	-5.6	2.14e-08	0.07	FALSE
Liver	Slc16a12	mRNA stability	ENSRNOG00000021916	0.11	1	0.12	1.1e-13	-5.21	1.88e-07	0.62	FALSE
NAcc	Pank1	alternative TSS	ENSRNOT00000100218	0.05	1	0.03	1.3e-03	5.3	1.18e-07	0.04	FALSE
NAcc	Cyp26a1	gene expression	ENSRNOG00000016750	0.06	2509	0.06	3.8e-05	-6.25	4.02e-10	0.55	TRUE
NAcc	Tnks2	gene expression	ENSRNOG00000052664	0.08	2036	0.06	1.4e-05	5.98	2.21e-09	0.52	FALSE
NAcc	ENSRNOG00000067881	gene expression	ENSRNOG00000067881	0.04	1	0.04	3.7e-04	5.29	1.20e-07	0.04	FALSE
NAcc	Tnks2	isoform ratio	ENSRNOT00000079808	0.11	1	0.09	2.2e-07	5.13	2.92e-07	0.08	FALSE
NAcc	Tnks2	isoform ratio	ENSRNOT00000085497	0.12	1	0.1	1.5e-07	-5.13	2.92e-07	0.08	FALSE
NAcc	Cpeb3	mRNA stability	ENSRNOG00000020689	0.06	55	0.04	5.3e-04	5.11	3.15e-07	0.54	FALSE
OFC	Marchf5	gene expression	ENSRNOG00000017396	0.12	1	0.09	3.9e-03	5.61	2.05e-08	0.05	FALSE
OFC	Ffar4	gene expression	ENSRNOG00000021763	0.18	2310	0.09	3.8e-03	5.83	5.66e-09	0.33	FALSE
OFC	Exoc6	gene expression	ENSRNOG00000036601	0.29	2290	0.23	4.2e-06	-5.45	4.90e-08	0.49	FALSE
OFC	Tnks2	gene expression	ENSRNOG00000052664	0.35	1	0.23	4.0e-06	-5.6	2.12e-08	0.09	FALSE
PL	Ankrd1	alternative TSS	ENSRNOT00000108356	0.04	1	0.02	8.9e-03	-5.68	1.38e-08	0.06	FALSE
PL	Ankrd1	alternative TSS	ENSRNOT00000117221	0.03	1	0.01	2.4e-02	5.63	1.82e-08	0.05	FALSE
PL	Ankrd1	alternative TSS	ENSRNOT00000117221	0.03	1	0.02	2.1e-02	5.63	1.82e-08	0.05	FALSE
PL	Pank1	alternative TSS	ENSRNOT00000100218	0.04	17	0.03	3.5e-03	5.65	1.56e-08	0.64	FALSE
PL	Cyp26a1	gene expression	ENSRNOG00000016750	0.19	23	0.2	2.0e-15	-5.89	3.86e-09	0.34	FALSE
PL	Ide	gene expression	ENSRNOG00000016833	0.04	1979	0.02	1.7e-02	5.41	6.31e-08	0.47	FALSE
PL	Marchf5	gene expression	ENSRNOG00000017396	0.21	46	0.16	5.2e-12	5.6	2.09e-08	0.58	FALSE
PL	Pcgf5	gene expression	ENSRNOG00000018532	0.08	1	0.09	3.7e-07	5.33	9.77e-08	0.25	FALSE
PL	Cpeb3	gene expression	ENSRNOG00000020689	0.04	1	0.03	3.6e-03	-5.16	2.47e-07	0.03	FALSE
PL	Cyp26c1	gene expression	ENSRNOG00000030698	0.05	2502	0.02	6.8e-03	-5.67	1.39e-08	0.25	FALSE
PL	Exoc6	gene expression	ENSRNOG00000036601	0.2	18	0.28	3.1e-21	-5.46	4.64e-08	0.5	FALSE
PL	Pank1	isoform ratio	ENSRNOT00000100218	0.06	1	0.04	4.1e-04	5.21	1.88e-07	0.06	FALSE
PL	Marchf5	mRNA stability	ENSRNOG00000017396	0.06	1	0.04	2.6e-04	-5.67	1.45e-08	0.2	FALSE