Hub : Traits : Length with tail : ← →

chr9:54,140,250-57,601,104

Trait: Length with tail

Best TWAS P=8.170789e-14 · Best GWAS P=8.170789e-14 conditioned to 1

Associated models

#	Tissue	Gene	Modality	RNA phenotype	h2	eQTL R2	model	# weights	model R2	model R2 P	eQTL GWAS Z	TWAS Z	TWAS P	Top SNP corr	PP3	PP4	joint
1	Adipose	Stk17b	gene expression	ENSRNOG00000012502	0.04	0.02	blup	1707	0.02	1.3e-03	-6.4	7.0	2.3e-12	-0.99	0.43	0.52	FALSE
2	Adipose	Ccdc150	gene expression	ENSRNOG00000013318	0.03	0.02	top1	1	0.02	5.4e-03	-5.8	-5.8	8.0e-09	0.92	0.06	0.03	FALSE
3	Adipose	Pgap1	gene expression	ENSRNOG00000013388	0.06	0.04	top1	1	0.04	1.6e-05	-6.9	-6.9	5.7e-12	0.93	0.45	0.19	FALSE
4	Adipose	Coq10b	gene expression	ENSRNOG00000014456	0.05	0.03	top1	1	0.03	1.6e-04	-6.5	-6.5	7.9e-11	0.81	0.15	0.06	FALSE
5	Adipose	Hspd1	gene expression	ENSRNOG00000014525	0.02	0.02	top1	1	0.02	1.7e-03	-6.3	-6.3	3.7e-10	0.66	0.05	0.03	FALSE
6	Adipose	Boll	gene expression	ENSRNOG00000054379	0.06	0.05	top1	1	0.06	9.8e-07	-6.3	6.3	3.5e-10	-0.65	0.77	0.03	FALSE
7	Adipose	NA	gene expression	ENSRNOG00000064815	0.06	0.05	top1	1	0.05	7.2e-06	-6.8	-6.8	1.3e-11	0.96	0.38	0.05	FALSE
8	Adipose	NA	gene expression	ENSRNOG00000067131	0.07	0.04	top1	1	0.04	1.5e-05	-6.4	6.4	1.6e-10	-0.94	0.24	0.09	FALSE
9	Adipose	Slc39a10	isoform ratio	ENSRNOT00000016262	0.02	0.02	top1	1	0.01	7.3e-03	-6.3	6.3	3.0e-10	-0.90	0.06	0.03	FALSE
10	Adipose	Gtf3c3	intron excision ratio	chr9:55938738:55941796	0.02	0.01	top1	1	0.01	1.8e-02	-6.0	-6.0	2.3e-09	0.90	0.06	0.03	FALSE
11	Adipose	Hecw2	intron excision ratio	chr9:55488290:55492328	0.02	0.01	top1	1	0.01	5.6e-02	-6.5	6.5	6.6e-11	-0.98	0.06	0.03	FALSE
12	Adipose	Slc39a10	mRNA stability	ENSRNOG00000011677	0.03	0.03	top1	1	0.03	7.2e-04	-5.8	5.8	7.7e-09	-0.86	0.06	0.03	FALSE
13	Adipose	Pgap1	mRNA stability	ENSRNOG00000013388	0.16	0.12	enet	127	0.14	2.1e-15	-6.5	-7.0	2.5e-12	0.89	0.99	0.01	FALSE
14	Adipose	Sf3b1	mRNA stability	ENSRNOG00000013516	0.18	0.02	enet	209	0.03	3.5e-04	-6.8	5.9	3.7e-09	-0.69	0.25	0.53	FALSE
15	Adipose	Coq10b	mRNA stability	ENSRNOG00000014456	0.02	0.01	blup	1472	0.02	2.3e-03	-6.5	-6.9	4.1e-12	0.81	0.38	0.46	FALSE
16	BLA	Coq10b	gene expression	ENSRNOG00000014456	0.05	0.03	top1	1	0.03	6.9e-03	-6.9	-6.9	3.8e-12	0.83	0.06	0.06	FALSE
17	BLA	NA	gene expression	ENSRNOG00000064815	0.14	0.10	blup	1961	0.11	1.2e-06	-6.9	-6.0	1.8e-09	0.81	0.61	0.38	FALSE
18	BLA	NA	gene expression	ENSRNOG00000065339	0.05	0.04	enet	17	0.04	2.8e-03	-6.9	-6.6	3.1e-11	0.72	0.36	0.45	FALSE
19	Brain	Gtf3c3	alternative polyA	ENSRNOT00000002864	0.07	0.03	lasso	21	0.05	1.3e-05	-5.7	6.2	4.3e-10	-0.94	0.96	0.01	FALSE
20	Brain	Ccdc150	gene expression	ENSRNOG00000013318	0.03	0.02	top1	1	0.02	9.5e-03	-6.7	-6.7	2.0e-11	0.76	0.06	0.03	FALSE
21	Brain	Pgap1	gene expression	ENSRNOG00000013388	0.23	0.29	top1	1	0.29	2.3e-27	-6.6	-6.6	3.9e-11	0.94	0.94	0.06	FALSE
22	Brain	Coq10b	gene expression	ENSRNOG00000014456	0.14	0.17	enet	254	0.18	4.3e-16	-7.0	-7.1	1.3e-12	0.82	0.18	0.82	FALSE
23	Brain	NA	gene expression	ENSRNOG00000064815	0.27	0.29	top1	1	0.29	1.5e-27	-6.9	-6.9	6.0e-12	0.96	0.82	0.18	FALSE
24	Brain	NA	gene expression	ENSRNOG00000065623	0.03	0.02	blup	1944	0.03	7.6e-04	-6.9	-6.4	1.9e-10	0.82	0.54	0.37	FALSE
25	Brain	Pgap1	mRNA stability	ENSRNOG00000013388	0.06	0.03	top1	1	0.03	7.4e-04	-5.9	-5.9	3.7e-09	0.92	0.44	0.02	FALSE
26	Brain	Sf3b1	mRNA stability	ENSRNOG00000013516	0.03	0.04	top1	1	0.04	3.0e-04	-6.4	6.4	2.0e-10	-0.75	0.06	0.03	FALSE
27	Brain	Coq10b	mRNA stability	ENSRNOG00000014456	0.05	0.04	lasso	34	0.04	2.7e-04	-6.3	-6.3	3.3e-10	0.69	0.65	0.34	FALSE
28	Brain	Plcl1	mRNA stability	ENSRNOG00000032659	0.04	0.04	lasso	8	0.04	9.7e-05	-4.4	5.5	4.3e-08	-0.62	0.63	0.37	FALSE
29	IL	Gtf3c3	alternative polyA	ENSRNOT00000002864	0.17	0.04	blup	1229	0.06	1.4e-02	-6.3	7.1	1.6e-12	-0.93	0.34	0.22	FALSE
30	IL	Gtf3c3	isoform ratio	ENSRNOT00000002864	0.14	0.03	blup	1229	0.06	1.3e-02	-6.3	7.1	1.4e-12	-0.93	0.30	0.21	FALSE
31	LHb	Gtf3c3	alternative polyA	ENSRNOT00000002864	0.17	0.05	top1	1	0.05	2.5e-02	-6.0	6.0	2.3e-09	-0.95	0.06	0.05	FALSE
32	LHb	Coq10b	gene expression	ENSRNOG00000014456	0.60	0.06	top1	1	0.06	1.6e-02	-7.0	-7.0	3.4e-12	0.78	0.05	0.10	FALSE
33	LHb	Gtf3c3	isoform ratio	ENSRNOT00000002864	0.19	0.07	blup	1227	0.11	1.6e-03	-7.2	7.1	1.4e-12	-0.97	0.35	0.45	FALSE
34	Liver	Slc39a10	gene expression	ENSRNOG00000011677	0.03	0.01	blup	1915	0.01	8.0e-03	-6.0	6.2	4.4e-10	-0.87	0.53	0.28	FALSE
35	Liver	Ankrd44	gene expression	ENSRNOG00000021384	0.04	0.03	enet	26	0.03	1.2e-04	-6.5	6.4	2.0e-10	-0.69	0.80	0.18	FALSE
36	Liver	Pgap1	mRNA stability	ENSRNOG00000013388	0.03	0.01	blup	1843	0.01	1.5e-02	-6.5	-7.0	2.6e-12	0.91	0.29	0.52	FALSE
37	Liver	Coq10b	mRNA stability	ENSRNOG00000014456	0.03	0.02	top1	1	0.02	5.8e-03	-5.9	-5.9	2.9e-09	0.74	0.05	0.03	FALSE
38	Liver	Hspd1	mRNA stability	ENSRNOG00000014525	0.22	0.19	top1	1	0.19	2.6e-20	-6.8	-6.8	9.1e-12	0.81	0.32	0.68	FALSE
39	NAcc	Gtf3c3	alternative polyA	ENSRNOT00000002864	0.04	0.03	top1	1	0.03	1.7e-03	-6.2	6.2	4.3e-10	-0.93	0.08	0.03	FALSE
40	NAcc	Hecw2	gene expression	ENSRNOG00000013257	0.04	0.03	top1	1	0.03	5.1e-03	-7.5	-7.5	8.2e-14	0.97	0.06	0.15	TRUE
41	NAcc	Pgap1	gene expression	ENSRNOG00000013388	0.13	0.12	top1	1	0.12	4.2e-09	-6.2	-6.2	4.3e-10	0.91	0.98	0.01	FALSE
42	NAcc	Sf3b1	gene expression	ENSRNOG00000013516	0.04	0.01	top1	1	0.01	5.1e-02	-6.0	6.0	2.2e-09	-0.60	0.05	0.03	FALSE
43	NAcc	Coq10b	gene expression	ENSRNOG00000014456	0.18	0.06	enet	190	0.07	3.9e-06	-7.0	-6.7	2.0e-11	0.70	0.20	0.80	FALSE
44	NAcc	Mob4	gene expression	ENSRNOG00000014980	0.06	0.04	top1	1	0.04	5.0e-04	-6.8	-6.8	9.0e-12	0.79	0.09	0.13	FALSE
45	NAcc	Rftn2	gene expression	ENSRNOG00000015594	0.05	0.03	top1	1	0.03	5.4e-03	-6.3	-6.3	3.0e-10	0.64	0.06	0.03	FALSE
46	NAcc	Dnah7	gene expression	ENSRNOG00000060984	0.04	0.04	top1	1	0.04	8.8e-04	-6.0	-6.0	2.6e-09	0.96	0.07	0.03	FALSE
47	NAcc	NA	gene expression	ENSRNOG00000064815	0.22	0.23	top1	1	0.23	9.9e-17	-6.2	-6.2	4.3e-10	0.94	1.00	0.00	FALSE
48	NAcc	NA	gene expression	ENSRNOG00000065623	0.09	0.04	enet	805	0.05	2.3e-04	-6.9	-6.1	8.1e-10	0.82	0.88	0.12	FALSE
49	NAcc	Slc39a10	mRNA stability	ENSRNOG00000011677	0.05	0.03	lasso	2	0.04	5.9e-04	-6.6	5.7	1.4e-08	-0.87	0.40	0.30	FALSE
50	NAcc	Coq10b	mRNA stability	ENSRNOG00000014456	0.11	0.08	top1	1	0.08	9.5e-07	-6.3	-6.3	2.4e-10	0.74	0.76	0.08	FALSE
51	OFC	Pgap1	gene expression	ENSRNOG00000013388	0.18	0.03	blup	1059	0.03	5.5e-02	-6.6	-6.9	4.1e-12	0.91	0.18	0.25	FALSE
52	PL	Slc39a10	alternative TSS	ENSRNOT00000093748	0.03	0.01	blup	1913	0.02	1.8e-02	-6.5	-6.5	9.0e-11	0.91	0.48	0.33	FALSE
53	PL	Pgap1	gene expression	ENSRNOG00000013388	0.09	0.05	top1	1	0.05	1.8e-04	-7.3	-7.3	2.3e-13	0.94	0.09	0.89	FALSE
54	PL	Coq10b	gene expression	ENSRNOG00000014456	0.07	0.04	lasso	27	0.05	9.1e-05	-6.9	-7.0	3.1e-12	0.79	0.21	0.78	FALSE
55	PL	Rftn2	gene expression	ENSRNOG00000015594	0.03	0.02	blup	1411	0.02	1.1e-02	-6.3	-6.5	1.0e-10	0.70	0.50	0.39	FALSE
56	PL	Plcl1	gene expression	ENSRNOG00000032659	0.03	0.01	blup	1644	0.01	4.0e-02	-4.9	6.4	1.6e-10	-0.72	0.34	0.43	FALSE
57	PL	NA	gene expression	ENSRNOG00000064815	0.10	0.09	top1	1	0.09	3.4e-07	-7.2	-7.2	6.3e-13	0.96	0.32	0.65	FALSE
58	PL	Gtf3c3	isoform ratio	ENSRNOT00000002864	0.04	0.00	top1	1	0.00	1.6e-01	-6.0	6.0	2.1e-09	-0.86	0.07	0.03	FALSE
59	PL	Slc39a10	isoform ratio	ENSRNOT00000016262	0.03	0.01	blup	1913	0.02	1.5e-02	-6.6	6.6	5.5e-11	-0.93	0.50	0.37	FALSE
60	PL	Slc39a10	intron excision ratio	chr9:54876271:54928715	0.04	0.03	top1	1	0.03	1.2e-03	-6.5	6.5	9.9e-11	-0.94	0.07	0.04	FALSE
61	PL	Slc39a10	intron excision ratio	chr9:54911589:54928715	0.03	0.03	enet	26	0.03	4.4e-03	-6.3	-6.6	3.0e-11	0.96	0.51	0.37	FALSE
62	PL	NA	intron excision ratio	chr9:54876271:54928715	0.03	0.03	top1	1	0.03	1.2e-03	-6.5	6.5	9.9e-11	-0.93	0.07	0.04	FALSE
63	PL	NA	intron excision ratio	chr9:54911589:54928715	0.03	0.02	top1	1	0.03	5.2e-03	-6.6	-6.6	3.6e-11	0.93	0.07	0.04	FALSE
64	PL	Slc39a10	mRNA stability	ENSRNOG00000011677	0.08	0.01	blup	1913	0.05	5.6e-05	-6.6	5.3	1.3e-07	-0.77	0.50	0.49	FALSE

h2: Heritability estimate for the given transcriptomic model. PP3: Posterior probability of two distinct causal variants. PP4: Posterior probability of a single shared causal variant. joint: Whether the RNA phenotype is in the joint model.