Best TWAS P=1.01e-08 · Best GWAS P=7.06e-08 conditioned to 1.00e+00
Tissue | Gene | RNA modality | RNA phenotype | h2 | # weights | Model R2 | Model R2 P | TWAS Z | TWAS P | Coloc P | Joint |
---|---|---|---|---|---|---|---|---|---|---|---|
Adipose | Pet100 | alternative TSS | ENSRNOT00000071928 | 0.22 | 116 | 0.13 | 3.4e-14 | 5.11 | 3.17e-07 | 0.68 | FALSE |
Adipose | Pet100 | alternative TSS | ENSRNOT00000107172 | 0.22 | 122 | 0.13 | 2.6e-14 | -5.13 | 2.89e-07 | 0.66 | TRUE |
Adipose | Insr | gene expression | ENSRNOG00000029986 | 0.13 | 1 | 0.02 | 4.3e-03 | 5.14 | 2.77e-07 | 0.06 | TRUE |
Adipose | Pet100 | isoform ratio | ENSRNOT00000071928 | 0.23 | 64 | 0.13 | 1.8e-14 | 5.16 | 2.51e-07 | 0.73 | FALSE |
Adipose | Pet100 | isoform ratio | ENSRNOT00000107172 | 0.23 | 66 | 0.13 | 2.6e-14 | -5.17 | 2.40e-07 | 0.74 | FALSE |
Adipose | Zfp958 | isoform ratio | ENSRNOT00000102786 | 0.03 | 169 | 0.01 | 6.9e-03 | 5.33 | 9.76e-08 | 0.35 | FALSE |
Adipose | Zfp958 | intron excision ratio | chr12:3971128:3971331 | 0.03 | 1113 | 0.01 | 2.8e-02 | 5.33 | 9.99e-08 | 0.24 | TRUE |
Adipose | Elavl1 | mRNA stability | ENSRNOG00000001069 | 0.16 | 2406 | 0.07 | 9.4e-09 | 5.55 | 2.78e-08 | 0.43 | FALSE |
BLA | Pet100 | intron excision ratio | chr12:1680794:1680963 | 0.36 | 13 | 0.19 | 1.7e-10 | -5.16 | 2.49e-07 | 0.75 | FALSE |
BLA | Cers4 | mRNA stability | ENSRNOG00000001072 | 0.16 | 2109 | 0.08 | 5.0e-05 | 5.41 | 6.33e-08 | 0.39 | FALSE |
Brain | Elavl1 | gene expression | ENSRNOG00000001069 | 0.07 | 2406 | 0.02 | 4.4e-03 | -5.56 | 2.69e-08 | 0.41 | FALSE |
Brain | Arhgef18 | gene expression | ENSRNOG00000028090 | 0.12 | 11 | 0.08 | 1.2e-07 | -5.52 | 3.35e-08 | 0.77 | FALSE |
Brain | Trappc5 | intron excision ratio | chr12:1737769:1740114 | 0.05 | 18 | 0.03 | 5.1e-04 | -5.73 | 1.01e-08 | 0.45 | TRUE |
Eye | Elavl1 | intron excision ratio | chr12:2667464:2684652 | 0.69 | 30 | 0.31 | 1.3e-05 | 5.36 | 8.44e-08 | 0.31 | FALSE |
IL | Snapc2 | gene expression | ENSRNOG00000001056 | 0.35 | 5 | 0.03 | 8.2e-02 | -5.63 | 1.84e-08 | 0.34 | FALSE |
Liver | N4bp2l2 | alternative polyA | ENSRNOT00000111844 | 0.1 | 681 | 0.07 | 2.3e-08 | 5.12 | 3.09e-07 | 0.82 | TRUE |
Liver | N4bp2l2 | alternative polyA | ENSRNOT00000118063 | 0.1 | 681 | 0.07 | 1.5e-08 | -5.14 | 2.81e-07 | 0.82 | FALSE |
Liver | Timm44 | gene expression | ENSRNOG00000001058 | 0.11 | 10 | 0.04 | 7.4e-05 | 5.45 | 4.94e-08 | 0.62 | FALSE |
Liver | N4bp2l1 | isoform ratio | ENSRNOT00000110394 | 0.06 | 587 | 0.04 | 6.9e-05 | 5.1 | 3.40e-07 | 0.86 | FALSE |
Liver | Pet100 | intron excision ratio | chr12:1680794:1680963 | 0.21 | 1823 | 0.09 | 1.9e-10 | -5.32 | 1.01e-07 | 0.56 | FALSE |
Liver | Pet100 | intron excision ratio | chr12:1680995:1681508 | 0.18 | 152 | 0.07 | 3.1e-08 | 5.15 | 2.54e-07 | 0.7 | FALSE |
Liver | Zfp958 | intron excision ratio | chr12:3953566:3958666 | 0.03 | 1113 | 0.01 | 1.1e-02 | -5.47 | 4.45e-08 | 0.33 | FALSE |
NAcc | Cers4 | gene expression | ENSRNOG00000001072 | 0.27 | 26 | 0.27 | 5.9e-20 | 5.4 | 6.59e-08 | 0.57 | TRUE |
NAcc | Arhgef18 | gene expression | ENSRNOG00000028090 | 0.13 | 1531 | 0.08 | 1.3e-06 | -5.15 | 2.56e-07 | 0.45 | FALSE |
NAcc | Trappc5 | isoform ratio | ENSRNOT00000001327 | 0.11 | 38 | 0.04 | 2.9e-04 | -5.17 | 2.38e-07 | 0.79 | FALSE |
OFC | Snapc2 | gene expression | ENSRNOG00000001056 | 0.54 | 2272 | 0.12 | 1.0e-03 | -5.42 | 5.92e-08 | 0.44 | FALSE |
PL | Stxbp2 | gene expression | ENSRNOG00000000994 | 0.13 | 1819 | 0.06 | 2.6e-05 | -5.17 | 2.39e-07 | 0.39 | FALSE |
PL | Pet100 | intron excision ratio | chr12:1680794:1680963 | 0.49 | 1822 | 0.18 | 2.5e-13 | -5.18 | 2.22e-07 | 0.79 | FALSE |