Best TWAS P=1.630223e-16 · Best GWAS P=1.554459e-15 conditioned to NaN
# | Tissue | Gene | Modality | RNA phenotype | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | Adipose | Rufy3 | alternative TSS | ENSRNOT00000103075 | 0.02 | 0.02 | top1 | 1 | 0.02 | 5.6e-03 | -7.6 | 7.6 | 3.0e-14 | -0.73 | 0.05 | 0.04 | FALSE |
2 | Adipose | Sult1e1 | gene expression | ENSRNOG00000001957 | 0.02 | 0.02 | top1 | 1 | 0.02 | 2.2e-03 | -6.3 | -6.3 | 2.9e-10 | 0.74 | 0.08 | 0.03 | FALSE |
3 | Adipose | Sult1d1 | gene expression | ENSRNOG00000001960 | 0.14 | 0.17 | lasso | 6 | 0.19 | 6.4e-21 | -6.6 | -6.9 | 5.4e-12 | -0.07 | 0.45 | 0.55 | FALSE |
4 | Adipose | Afp | gene expression | ENSRNOG00000002889 | 0.66 | 0.51 | enet | 417 | 0.59 | 4.2e-82 | -5.9 | 6.6 | 4.3e-11 | -0.62 | 0.45 | 0.55 | FALSE |
5 | Adipose | Alb | gene expression | ENSRNOG00000002911 | 0.68 | 0.49 | enet | 319 | 0.50 | 1.3e-63 | -5.3 | 5.2 | 2.4e-07 | -0.53 | 1.00 | 0.00 | FALSE |
6 | Adipose | Slc4a4 | gene expression | ENSRNOG00000003134 | 0.17 | 0.05 | blup | 1869 | 0.09 | 1.8e-10 | -7.5 | -6.4 | 1.8e-10 | 0.57 | 0.87 | 0.13 | FALSE |
7 | Adipose | Mob1b | gene expression | ENSRNOG00000010996 | 0.02 | 0.00 | blup | 1889 | 0.00 | 1.2e-01 | -7.8 | 7.8 | 8.5e-15 | -0.76 | 0.32 | 0.51 | FALSE |
8 | Adipose | AABR07014573.2 | gene expression | ENSRNOG00000023430 | 0.15 | 0.03 | blup | 1494 | 0.05 | 3.4e-06 | -6.8 | -6.4 | 1.3e-10 | 0.63 | 0.39 | 0.61 | FALSE |
9 | Adipose | Tmprss11g | gene expression | ENSRNOG00000029964 | 0.21 | 0.08 | top1 | 1 | 0.07 | 9.9e-09 | -6.4 | -6.4 | 2.0e-10 | 0.67 | 0.50 | 0.50 | FALSE |
10 | Adipose | NA | gene expression | ENSRNOG00000065137 | 0.04 | 0.01 | top1 | 1 | 0.01 | 2.2e-02 | -6.2 | 6.2 | 5.9e-10 | -0.57 | 0.08 | 0.03 | FALSE |
11 | Adipose | Ugt2b | gene expression | ENSRNOG00000069670 | 0.12 | 0.10 | lasso | 35 | 0.10 | 1.3e-11 | -6.8 | 7.0 | 2.8e-12 | -0.64 | 0.52 | 0.48 | FALSE |
12 | Adipose | Ugt2b7 | gene expression | ENSRNOG00000070682 | 0.03 | 0.01 | top1 | 1 | 0.01 | 3.3e-02 | -6.7 | 6.7 | 2.1e-11 | -0.56 | 0.08 | 0.04 | FALSE |
13 | Adipose | Dck | mRNA stability | ENSRNOG00000003296 | 0.06 | 0.06 | top1 | 1 | 0.06 | 7.2e-07 | -7.8 | 7.8 | 7.9e-15 | -0.76 | 0.10 | 0.87 | FALSE |
14 | Adipose | Grsf1 | mRNA stability | ENSRNOG00000003392 | 0.13 | 0.10 | blup | 1905 | 0.12 | 4.3e-13 | -7.7 | -6.3 | 2.7e-10 | 0.63 | 0.36 | 0.64 | FALSE |
15 | BLA | Sult1d1 | gene expression | ENSRNOG00000001960 | 0.28 | 0.23 | blup | 1921 | 0.30 | 2.5e-16 | -6.6 | -7.0 | 2.6e-12 | 0.73 | 0.77 | 0.23 | FALSE |
16 | BLA | Alb | gene expression | ENSRNOG00000002911 | 0.30 | 0.31 | lasso | 29 | 0.35 | 2.2e-19 | -6.1 | -6.1 | 1.1e-09 | 0.51 | 0.46 | 0.54 | FALSE |
17 | BLA | Dck | gene expression | ENSRNOG00000003296 | 0.40 | 0.46 | lasso | 9 | 0.48 | 2.2e-28 | -7.4 | 7.7 | 1.3e-14 | -0.72 | 0.28 | 0.72 | FALSE |
18 | BLA | Rufy3 | gene expression | ENSRNOG00000003428 | 0.23 | 0.28 | lasso | 22 | 0.29 | 6.1e-16 | -7.7 | -7.8 | 8.6e-15 | 0.74 | 0.44 | 0.56 | FALSE |
19 | BLA | RGD1559459 | gene expression | ENSRNOG00000042714 | 0.14 | 0.12 | blup | 3378 | 0.14 | 4.5e-08 | -6.1 | 5.7 | 1.2e-08 | -0.57 | 0.73 | 0.27 | FALSE |
20 | BLA | NA | gene expression | ENSRNOG00000068298 | 0.04 | 0.00 | blup | 1930 | 0.01 | 1.5e-01 | -6.7 | -7.1 | 1.4e-12 | 0.68 | 0.51 | 0.24 | FALSE |
21 | BLA | Slc4a4 | isoform ratio | ENSRNOT00000004391 | 0.13 | 0.08 | top1 | 1 | 0.08 | 4.6e-05 | -6.8 | -6.8 | 7.7e-12 | 0.77 | 0.25 | 0.03 | FALSE |
22 | BLA | Slc4a4 | isoform ratio | ENSRNOT00000033806 | 0.11 | 0.05 | top1 | 1 | 0.06 | 6.8e-04 | 7.5 | 7.5 | 8.6e-14 | -0.77 | 0.10 | 0.05 | FALSE |
23 | BLA | Rufy3 | isoform ratio | ENSRNOT00000004776 | 0.16 | 0.06 | enet | 126 | 0.10 | 8.8e-06 | -7.7 | 6.6 | 3.9e-11 | -0.69 | 0.50 | 0.48 | FALSE |
24 | BLA | Slc4a4 | intron excision ratio | chr14:18846136:18848430 | 0.06 | 0.00 | blup | 1870 | 0.02 | 3.0e-02 | -7.5 | 7.8 | 4.6e-15 | -0.79 | 0.37 | 0.28 | FALSE |
25 | BLA | Slc4a4 | intron excision ratio | chr14:18846136:18852915 | 0.14 | 0.03 | blup | 1870 | 0.03 | 6.5e-03 | -7.8 | -6.7 | 2.5e-11 | 0.73 | 0.40 | 0.56 | FALSE |
26 | BLA | Dck | intron excision ratio | chr14:19337749:19340918 | 0.07 | 0.05 | top1 | 1 | 0.05 | 7.1e-04 | -7.2 | -7.2 | 4.7e-13 | 0.75 | 0.14 | 0.05 | FALSE |
27 | BLA | Rufy3 | intron excision ratio | chr14:19465502:19489662 | 0.13 | 0.06 | enet | 112 | 0.09 | 1.4e-05 | -6.7 | 6.8 | 1.2e-11 | -0.72 | 0.50 | 0.48 | TRUE |
28 | BLA | Rufy3 | intron excision ratio | chr14:19465502:19506028 | 0.08 | 0.09 | enet | 59 | 0.09 | 1.5e-05 | -7.7 | -7.7 | 1.1e-14 | 0.63 | 0.54 | 0.46 | FALSE |
29 | BLA | Mob1b | intron excision ratio | chr14:19337749:19340918 | 0.07 | 0.04 | top1 | 1 | 0.04 | 2.1e-03 | -7.2 | -7.2 | 8.2e-13 | 0.74 | 0.11 | 0.04 | FALSE |
30 | Brain | Rufy3 | alternative TSS | ENSRNOT00000004776 | 0.06 | 0.06 | lasso | 3 | 0.07 | 9.4e-07 | -7.7 | 7.2 | 4.8e-13 | 0.38 | 0.76 | 0.24 | FALSE |
31 | Brain | Rufy3 | alternative TSS | ENSRNOT00000103075 | 0.23 | 0.31 | blup | 1761 | 0.32 | 4.3e-30 | -6.7 | -5.6 | 2.2e-08 | 0.52 | 1.00 | 0.00 | FALSE |
32 | Brain | Rufy3 | alternative TSS | ENSRNOT00000004776 | 0.06 | 0.06 | enet | 6 | 0.06 | 1.2e-06 | -7.5 | 6.3 | 2.4e-10 | 0.32 | 0.70 | 0.30 | FALSE |
33 | Brain | Rufy3 | alternative TSS | ENSRNOT00000103075 | 0.24 | 0.32 | blup | 1761 | 0.32 | 1.7e-30 | -6.7 | -5.7 | 1.2e-08 | 0.53 | 1.00 | 0.00 | FALSE |
34 | Brain | Sult1d1 | gene expression | ENSRNOG00000001960 | 0.10 | 0.11 | blup | 1940 | 0.12 | 3.0e-11 | -7.3 | -6.9 | 7.1e-12 | 0.71 | 0.28 | 0.72 | FALSE |
35 | Brain | Alb | gene expression | ENSRNOG00000002911 | 0.35 | 0.49 | lasso | 16 | 0.51 | 1.2e-53 | -6.1 | -6.1 | 1.1e-09 | 0.51 | 0.46 | 0.54 | FALSE |
36 | Brain | Slc4a4 | gene expression | ENSRNOG00000003134 | 0.20 | 0.24 | lasso | 24 | 0.32 | 3.9e-30 | -6.9 | -7.6 | 2.5e-14 | 0.45 | 0.60 | 0.40 | FALSE |
37 | Brain | Dck | gene expression | ENSRNOG00000003296 | 0.66 | 0.64 | lasso | 16 | 0.65 | 3.2e-79 | -7.6 | 7.6 | 2.9e-14 | -0.61 | 0.38 | 0.62 | FALSE |
38 | Brain | Grsf1 | gene expression | ENSRNOG00000003392 | 0.16 | 0.07 | blup | 1906 | 0.10 | 2.7e-09 | -7.4 | 5.2 | 2.3e-07 | -0.50 | 0.43 | 0.57 | FALSE |
39 | Brain | Rufy3 | gene expression | ENSRNOG00000003428 | 0.35 | 0.44 | top1 | 1 | 0.44 | 3.1e-44 | -6.7 | -6.7 | 2.0e-11 | 0.69 | 1.00 | 0.00 | FALSE |
40 | Brain | NA | gene expression | ENSRNOG00000068298 | 0.08 | 0.12 | blup | 1930 | 0.12 | 2.0e-11 | -6.5 | -6.9 | 3.8e-12 | 0.66 | 0.86 | 0.14 | FALSE |
41 | Brain | Slc4a4 | isoform ratio | ENSRNOT00000004391 | 0.34 | 0.22 | top1 | 1 | 0.22 | 9.7e-20 | -7.8 | -7.8 | 8.0e-15 | 0.80 | 0.19 | 0.81 | FALSE |
42 | Brain | Slc4a4 | isoform ratio | ENSRNOT00000033806 | 0.23 | 0.12 | top1 | 1 | 0.12 | 6.2e-11 | -7.8 | 7.8 | 8.0e-15 | -0.82 | 0.19 | 0.81 | FALSE |
43 | Brain | Rufy3 | isoform ratio | ENSRNOT00000004776 | 0.22 | 0.25 | lasso | 6 | 0.26 | 1.4e-23 | -6.6 | 6.9 | 3.8e-12 | -0.65 | 0.99 | 0.01 | FALSE |
44 | Brain | Rufy3 | isoform ratio | ENSRNOT00000100042 | 0.15 | 0.21 | lasso | 4 | 0.22 | 9.7e-20 | -6.7 | -6.7 | 2.0e-11 | 0.62 | 1.00 | 0.00 | FALSE |
45 | Brain | Slc4a4 | intron excision ratio | chr14:18846136:18848430 | 0.15 | 0.14 | lasso | 14 | 0.14 | 3.6e-13 | -7.8 | 7.7 | 9.6e-15 | 0.39 | 0.18 | 0.82 | TRUE |
46 | Brain | Slc4a4 | intron excision ratio | chr14:18846136:18852915 | 0.40 | 0.33 | top1 | 1 | 0.33 | 3.8e-31 | -7.8 | -7.8 | 8.0e-15 | 0.79 | 0.19 | 0.81 | FALSE |
47 | Brain | Slc4a4 | intron excision ratio | chr14:18848526:18852915 | 0.24 | 0.20 | lasso | 7 | 0.20 | 5.7e-18 | -7.6 | 7.7 | 1.9e-14 | -0.96 | 0.22 | 0.78 | FALSE |
48 | Brain | Rufy3 | intron excision ratio | chr14:19465502:19489662 | 0.10 | 0.09 | lasso | 8 | 0.10 | 6.2e-10 | -6.9 | 7.7 | 1.4e-14 | -0.54 | 0.50 | 0.50 | TRUE |
49 | Brain | Rufy3 | intron excision ratio | chr14:19476176:19489662 | 0.05 | 0.00 | enet | 151 | 0.01 | 3.9e-02 | -2.5 | -5.7 | 1.1e-08 | 0.48 | 0.59 | 0.09 | FALSE |
50 | Brain | Sult1d1 | mRNA stability | ENSRNOG00000001960 | 0.09 | 0.08 | enet | 39 | 0.08 | 7.8e-08 | -7.4 | -7.5 | 9.3e-14 | 0.68 | 0.19 | 0.81 | FALSE |
51 | Brain | Slc4a4 | mRNA stability | ENSRNOG00000003134 | 0.11 | 0.10 | top1 | 1 | 0.10 | 1.2e-09 | -6.9 | -6.9 | 7.1e-12 | 0.79 | 0.99 | 0.01 | FALSE |
52 | Brain | Dck | mRNA stability | ENSRNOG00000003296 | 0.02 | 0.05 | top1 | 1 | 0.05 | 2.6e-05 | -7.2 | 7.2 | 4.7e-13 | -0.75 | 0.17 | 0.05 | FALSE |
53 | Brain | Mob1b | mRNA stability | ENSRNOG00000010996 | 0.03 | 0.04 | top1 | 1 | 0.04 | 1.2e-04 | -6.1 | -6.1 | 1.0e-09 | 0.71 | 0.09 | 0.03 | FALSE |
54 | Brain | Adamts3 | mRNA stability | ENSRNOG00000027463 | 0.10 | 0.07 | blup | 2924 | 0.09 | 3.0e-08 | -7.8 | -7.7 | 1.4e-14 | 0.94 | 0.35 | 0.65 | FALSE |
55 | Eye | Tmprss11b | mRNA stability | ENSRNOG00000002002 | 0.58 | 0.12 | lasso | 27 | 0.18 | 1.0e-03 | -6.1 | -6.5 | 9.2e-11 | 0.62 | 0.58 | 0.32 | FALSE |
56 | IL | Dck | gene expression | ENSRNOG00000003296 | 0.70 | 0.28 | top1 | 1 | 0.28 | 1.5e-07 | -7.4 | 7.4 | 1.3e-13 | -0.75 | 0.31 | 0.17 | FALSE |
57 | IL | Rufy3 | gene expression | ENSRNOG00000003428 | 0.38 | 0.16 | lasso | 3 | 0.17 | 6.4e-05 | -6.5 | -6.9 | 5.1e-12 | -0.01 | 0.79 | 0.17 | FALSE |
58 | LHb | Sult1d1 | gene expression | ENSRNOG00000001960 | 0.43 | 0.18 | top1 | 1 | 0.18 | 5.1e-05 | -6.6 | -6.6 | 3.0e-11 | 0.74 | 0.08 | 0.05 | FALSE |
59 | LHb | Alb | gene expression | ENSRNOG00000002911 | 0.52 | 0.12 | blup | 3881 | 0.24 | 1.8e-06 | -5.8 | -6.2 | 5.9e-10 | 0.55 | 0.52 | 0.48 | FALSE |
60 | LHb | Dck | gene expression | ENSRNOG00000003296 | 0.20 | 0.16 | top1 | 1 | 0.16 | 1.4e-04 | -7.4 | 7.4 | 1.3e-13 | -0.74 | 0.10 | 0.06 | FALSE |
61 | LHb | Slc4a4 | isoform ratio | ENSRNOT00000004391 | 0.25 | 0.13 | top1 | 1 | 0.13 | 6.9e-04 | -7.2 | -7.2 | 4.3e-13 | 0.79 | 0.09 | 0.05 | FALSE |
62 | LHb | Slc4a4 | intron excision ratio | chr14:18846136:18852915 | 0.50 | 0.19 | blup | 1691 | 0.22 | 7.3e-06 | -7.8 | -7.5 | 4.7e-14 | 0.87 | 0.42 | 0.55 | FALSE |
63 | LHb | Rufy3 | intron excision ratio | chr14:19465502:19506028 | 0.18 | 0.07 | top1 | 1 | 0.07 | 1.1e-02 | -6.6 | -6.6 | 5.2e-11 | 0.71 | 0.09 | 0.05 | FALSE |
64 | LHb | Sult1d1 | mRNA stability | ENSRNOG00000001960 | 0.24 | 0.07 | blup | 1342 | 0.09 | 4.7e-03 | -6.6 | -6.9 | 6.7e-12 | 0.67 | 0.41 | 0.29 | FALSE |
65 | Liver | Ugt2b10 | alternative TSS | ENSRNOT00000002724 | 0.05 | 0.03 | top1 | 1 | 0.03 | 5.6e-04 | -6.6 | 6.6 | 5.3e-11 | -0.64 | 0.15 | 0.09 | FALSE |
66 | Liver | Ugt2b10 | alternative TSS | ENSRNOT00000089471 | 0.04 | 0.02 | top1 | 1 | 0.02 | 1.7e-03 | -6.9 | -6.9 | 6.7e-12 | 0.65 | 0.10 | 0.22 | FALSE |
67 | Liver | Sult1e1 | gene expression | ENSRNOG00000001957 | 0.61 | 0.42 | enet | 203 | 0.44 | 6.3e-53 | -6.6 | -7.0 | 2.9e-12 | 0.68 | 0.40 | 0.60 | FALSE |
68 | Liver | Sult1d1 | gene expression | ENSRNOG00000001960 | 0.23 | 0.10 | top1 | 1 | 0.10 | 8.6e-11 | -6.8 | 6.8 | 1.0e-11 | -0.74 | 0.80 | 0.20 | FALSE |
69 | Liver | Sult1b1 | gene expression | ENSRNOG00000001967 | 0.26 | 0.11 | lasso | 6 | 0.14 | 5.0e-15 | -6.8 | 6.6 | 4.0e-11 | -0.65 | 0.36 | 0.64 | FALSE |
70 | Liver | Ugt2a3 | gene expression | ENSRNOG00000001973 | 0.57 | 0.30 | enet | 370 | 0.31 | 2.6e-35 | -6.7 | 6.5 | 1.0e-10 | -0.66 | 0.76 | 0.24 | FALSE |
71 | Liver | Ugt2b35 | gene expression | ENSRNOG00000001980 | 0.68 | 0.27 | enet | 19 | 0.30 | 1.0e-33 | -6.9 | -7.3 | 3.0e-13 | 0.62 | 0.43 | 0.57 | FALSE |
72 | Liver | Ugt2b10 | gene expression | ENSRNOG00000001990 | 0.07 | 0.03 | top1 | 1 | 0.03 | 3.6e-04 | -6.3 | 6.3 | 4.0e-10 | -0.64 | 0.19 | 0.04 | FALSE |
73 | Liver | Rassf6 | gene expression | ENSRNOG00000002866 | 0.42 | 0.16 | blup | 4020 | 0.16 | 2.2e-17 | 4.3 | 5.9 | 3.4e-09 | -0.64 | 1.00 | 0.00 | FALSE |
74 | Liver | Afm | gene expression | ENSRNOG00000002878 | 0.22 | 0.11 | lasso | 36 | 0.19 | 4.5e-21 | -6.1 | -6.1 | 1.1e-09 | 0.52 | 0.49 | 0.51 | FALSE |
75 | Liver | Gc | gene expression | ENSRNOG00000003119 | 0.05 | 0.02 | lasso | 3 | 0.03 | 1.7e-04 | -7.8 | 8.2 | 1.6e-16 | -0.91 | 0.43 | 0.56 | TRUE |
76 | Liver | Dck | gene expression | ENSRNOG00000003296 | 0.12 | 0.07 | top1 | 1 | 0.07 | 1.9e-08 | -7.5 | 7.5 | 4.8e-14 | -0.77 | 0.40 | 0.59 | FALSE |
77 | Liver | Grsf1 | gene expression | ENSRNOG00000003392 | 0.13 | 0.02 | enet | 245 | 0.06 | 9.7e-07 | -7.5 | -6.0 | 1.8e-09 | 0.67 | 0.44 | 0.56 | FALSE |
78 | Liver | Adamts3 | gene expression | ENSRNOG00000027463 | 0.04 | 0.00 | blup | 2923 | 0.02 | 1.3e-03 | 2.8 | 7.0 | 2.8e-12 | -0.77 | 0.44 | 0.29 | FALSE |
79 | Liver | NA | gene expression | ENSRNOG00000039504 | 0.15 | 0.07 | top1 | 1 | 0.07 | 2.0e-08 | -5.8 | 5.8 | 7.0e-09 | -0.45 | 0.77 | 0.22 | FALSE |
80 | Liver | AC114845.1 | gene expression | ENSRNOG00000042588 | 0.43 | 0.31 | enet | 19 | 0.33 | 7.9e-38 | -6.6 | -6.7 | 2.3e-11 | 0.51 | 0.70 | 0.30 | FALSE |
81 | Liver | RGD1559459 | gene expression | ENSRNOG00000042714 | 0.94 | 0.45 | enet | 418 | 0.52 | 3.0e-67 | -6.4 | 6.1 | 7.9e-10 | -0.64 | 0.70 | 0.30 | FALSE |
82 | Liver | Ugt2b | gene expression | ENSRNOG00000046540 | 0.83 | 0.53 | enet | 143 | 0.55 | 5.4e-72 | -6.6 | -6.8 | 7.5e-12 | 0.64 | 0.49 | 0.51 | FALSE |
83 | Liver | Ugt2b10 | gene expression | ENSRNOG00000062781 | 0.05 | 0.03 | enet | 19 | 0.03 | 3.1e-04 | -6.3 | -6.7 | 1.6e-11 | 0.55 | 0.59 | 0.39 | FALSE |
84 | Liver | Ugt2b15 | gene expression | ENSRNOG00000064466 | 0.36 | 0.16 | top1 | 1 | 0.16 | 9.0e-18 | -6.6 | -6.6 | 4.2e-11 | 0.59 | 0.56 | 0.44 | FALSE |
85 | Liver | Ugt2b | gene expression | ENSRNOG00000069670 | 0.83 | 0.58 | lasso | 47 | 0.64 | 9.4e-93 | -6.6 | 6.6 | 4.3e-11 | -0.63 | 0.78 | 0.22 | FALSE |
86 | Liver | AC114845.1 | intron excision ratio | chr14:20718303:20719756 | 0.57 | 0.51 | lasso | 41 | 0.53 | 9.0e-70 | -6.8 | 6.8 | 9.0e-12 | -0.66 | 0.61 | 0.39 | FALSE |
87 | Liver | AC114845.1 | intron excision ratio | chr14:20718303:20770242 | 0.82 | 0.57 | lasso | 69 | 0.62 | 1.3e-88 | -6.7 | 6.6 | 3.0e-11 | -0.66 | 0.62 | 0.38 | FALSE |
88 | Liver | AC114845.1 | intron excision ratio | chr14:20721564:20733031 | 0.85 | 0.50 | enet | 50 | 0.51 | 4.2e-65 | -6.9 | 6.4 | 1.7e-10 | -0.67 | 0.56 | 0.44 | FALSE |
89 | Liver | AC114845.1 | intron excision ratio | chr14:20721564:20757388 | 0.76 | 0.55 | enet | 75 | 0.56 | 6.0e-75 | -6.9 | 6.7 | 1.8e-11 | -0.67 | 0.63 | 0.37 | FALSE |
90 | Liver | AC114845.1 | intron excision ratio | chr14:20721564:20779363 | 0.16 | 0.12 | lasso | 15 | 0.13 | 6.8e-14 | -6.9 | 6.6 | 4.9e-11 | -0.61 | 0.65 | 0.35 | FALSE |
91 | Liver | AC114845.1 | intron excision ratio | chr14:20768768:20770242 | 0.16 | 0.14 | lasso | 27 | 0.14 | 9.2e-16 | -6.9 | -6.9 | 5.8e-12 | 0.69 | 0.61 | 0.39 | FALSE |
92 | Liver | AC114845.1 | intron excision ratio | chr14:20768768:20819532 | 0.04 | 0.01 | top1 | 1 | 0.01 | 3.6e-02 | -6.6 | -6.6 | 5.6e-11 | 0.68 | 0.07 | 0.03 | FALSE |
93 | Liver | AC114845.1 | intron excision ratio | chr14:20771925:20779363 | 0.89 | 0.57 | lasso | 49 | 0.64 | 3.1e-92 | -6.9 | -6.5 | 8.4e-11 | 0.62 | 0.60 | 0.40 | FALSE |
94 | Liver | AC114845.1 | intron excision ratio | chr14:20818050:20819532 | 0.51 | 0.44 | lasso | 25 | 0.51 | 4.5e-65 | -6.6 | -6.4 | 1.6e-10 | 0.59 | 0.67 | 0.33 | FALSE |
95 | Liver | AC114845.1 | intron excision ratio | chr14:20820793:20828959 | 0.89 | 0.62 | lasso | 70 | 0.70 | 1.1e-107 | -6.9 | -6.3 | 3.8e-10 | 0.62 | 0.64 | 0.36 | FALSE |
96 | Liver | Ugt2b | intron excision ratio | chr14:20718303:20719756 | 0.60 | 0.51 | lasso | 35 | 0.53 | 6.6e-70 | -6.8 | 6.8 | 9.2e-12 | -0.65 | 0.41 | 0.59 | FALSE |
97 | Liver | Ugt2b | intron excision ratio | chr14:20718303:20770242 | 0.83 | 0.57 | lasso | 61 | 0.62 | 1.3e-88 | -6.7 | 6.6 | 4.6e-11 | -0.64 | 0.42 | 0.58 | FALSE |
98 | Liver | Ugt2b | intron excision ratio | chr14:20721564:20733031 | 0.89 | 0.50 | enet | 49 | 0.51 | 6.0e-65 | -6.9 | 6.3 | 3.0e-10 | -0.66 | 0.37 | 0.63 | FALSE |
99 | Liver | Ugt2b | intron excision ratio | chr14:20721564:20757388 | 0.79 | 0.55 | enet | 178 | 0.56 | 5.2e-75 | -6.9 | 6.7 | 2.0e-11 | -0.66 | 0.45 | 0.55 | FALSE |
100 | Liver | Ugt2b | intron excision ratio | chr14:20721564:20779363 | 0.15 | 0.12 | lasso | 14 | 0.13 | 5.9e-14 | -6.9 | 6.6 | 5.0e-11 | -0.61 | 0.48 | 0.52 | FALSE |
101 | Liver | Ugt2b | intron excision ratio | chr14:20768768:20770242 | 0.20 | 0.14 | lasso | 32 | 0.14 | 9.0e-16 | -6.9 | -6.9 | 6.2e-12 | 0.67 | 0.42 | 0.58 | FALSE |
102 | Liver | Ugt2b | intron excision ratio | chr14:20768768:20819532 | 0.03 | 0.01 | top1 | 1 | 0.01 | 3.6e-02 | -6.6 | -6.6 | 5.6e-11 | 0.65 | 0.07 | 0.03 | FALSE |
103 | Liver | Ugt2b | intron excision ratio | chr14:20771925:20779363 | 0.89 | 0.57 | lasso | 48 | 0.64 | 2.1e-92 | -6.9 | -6.5 | 8.4e-11 | 0.62 | 0.40 | 0.60 | FALSE |
104 | Liver | Ugt2b | intron excision ratio | chr14:20818050:20819532 | 0.58 | 0.44 | lasso | 34 | 0.50 | 1.1e-63 | -6.6 | -6.4 | 1.3e-10 | 0.64 | 0.48 | 0.52 | FALSE |
105 | Liver | Ugt2b | intron excision ratio | chr14:20820793:20828959 | 0.89 | 0.62 | lasso | 69 | 0.70 | 3.2e-108 | -6.9 | -6.2 | 4.5e-10 | 0.61 | 0.44 | 0.56 | FALSE |
106 | Liver | Ugt2b15 | intron excision ratio | chr14:20718303:20719756 | 0.56 | 0.51 | lasso | 38 | 0.53 | 9.0e-70 | -6.8 | 6.8 | 9.0e-12 | -0.66 | 0.45 | 0.55 | FALSE |
107 | Liver | Ugt2b15 | intron excision ratio | chr14:20718303:20770242 | 0.82 | 0.57 | lasso | 76 | 0.62 | 1.3e-88 | -6.7 | 6.6 | 3.3e-11 | -0.66 | 0.46 | 0.54 | FALSE |
108 | Liver | Ugt2b15 | intron excision ratio | chr14:20721564:20733031 | 0.85 | 0.50 | enet | 50 | 0.51 | 4.3e-65 | -6.9 | 6.4 | 1.6e-10 | -0.67 | 0.40 | 0.60 | FALSE |
109 | Liver | Ugt2b15 | intron excision ratio | chr14:20721564:20757388 | 0.75 | 0.55 | enet | 125 | 0.56 | 6.3e-75 | -6.9 | 6.7 | 2.0e-11 | -0.67 | 0.48 | 0.52 | FALSE |
110 | Liver | Ugt2b15 | intron excision ratio | chr14:20721564:20779363 | 0.16 | 0.12 | lasso | 14 | 0.13 | 7.1e-14 | -6.9 | 6.6 | 5.0e-11 | -0.61 | 0.50 | 0.50 | FALSE |
111 | Liver | Ugt2b15 | intron excision ratio | chr14:20768768:20770242 | 0.18 | 0.14 | lasso | 27 | 0.14 | 9.0e-16 | -6.9 | -6.9 | 5.8e-12 | 0.69 | 0.45 | 0.55 | FALSE |
112 | Liver | Ugt2b15 | intron excision ratio | chr14:20768768:20819532 | 0.03 | 0.01 | top1 | 1 | 0.01 | 3.6e-02 | -6.6 | -6.6 | 5.6e-11 | 0.66 | 0.07 | 0.03 | FALSE |
113 | Liver | Ugt2b15 | intron excision ratio | chr14:20771925:20779363 | 0.89 | 0.57 | lasso | 49 | 0.64 | 3.1e-92 | -6.9 | -6.5 | 8.3e-11 | 0.62 | 0.44 | 0.56 | FALSE |
114 | Liver | Ugt2b15 | intron excision ratio | chr14:20818050:20819532 | 0.57 | 0.44 | lasso | 31 | 0.51 | 4.8e-65 | -6.6 | -6.4 | 1.6e-10 | 0.59 | 0.52 | 0.48 | FALSE |
115 | Liver | Ugt2b15 | intron excision ratio | chr14:20820793:20828959 | 0.88 | 0.62 | lasso | 64 | 0.70 | 1.4e-107 | -6.9 | -6.3 | 3.7e-10 | 0.62 | 0.48 | 0.52 | FALSE |
116 | Liver | Sult1e1 | mRNA stability | ENSRNOG00000001957 | 0.18 | 0.12 | top1 | 1 | 0.12 | 1.8e-13 | -6.6 | 6.6 | 3.0e-11 | -0.75 | 0.95 | 0.05 | FALSE |
117 | Liver | Sult1d1 | mRNA stability | ENSRNOG00000001960 | 0.08 | 0.07 | lasso | 7 | 0.07 | 1.2e-08 | -6.5 | 6.8 | 8.7e-12 | -0.55 | 0.44 | 0.56 | FALSE |
118 | Liver | Ugt2b35 | mRNA stability | ENSRNOG00000001980 | 0.68 | 0.49 | enet | 161 | 0.50 | 7.1e-64 | -6.6 | -6.9 | 3.8e-12 | 0.65 | 0.46 | 0.54 | FALSE |
119 | Liver | Rassf6 | mRNA stability | ENSRNOG00000002866 | 0.04 | 0.01 | enet | 17 | 0.01 | 1.1e-02 | 3.8 | 5.4 | 5.1e-08 | 0.00 | 0.86 | 0.02 | FALSE |
120 | Liver | Alb | mRNA stability | ENSRNOG00000002911 | 0.33 | 0.37 | blup | 3891 | 0.38 | 1.8e-44 | -6.0 | 5.3 | 1.4e-07 | -0.44 | 0.45 | 0.55 | FALSE |
121 | Liver | Ankrd17 | mRNA stability | ENSRNOG00000002940 | 0.21 | 0.23 | lasso | 10 | 0.23 | 1.8e-25 | -6.1 | 5.6 | 2.5e-08 | -0.48 | 0.48 | 0.52 | TRUE |
122 | Liver | AC114845.1 | mRNA stability | ENSRNOG00000042588 | 0.82 | 0.30 | lasso | 40 | 0.39 | 3.4e-46 | -6.9 | -6.8 | 7.6e-12 | 0.63 | 0.66 | 0.34 | FALSE |
123 | Liver | Ugt2b | mRNA stability | ENSRNOG00000069670 | 0.89 | 0.28 | enet | 56 | 0.45 | 1.4e-55 | -6.5 | 5.9 | 4.7e-09 | -0.71 | 0.81 | 0.19 | FALSE |
124 | NAcc | Alb | alternative polyA | ENSRNOT00000003921 | 0.32 | 0.23 | top1 | 1 | 0.23 | 5.5e-06 | -5.6 | 5.6 | 2.0e-08 | -0.52 | 0.24 | 0.05 | FALSE |
125 | NAcc | Alb | gene expression | ENSRNOG00000002911 | 0.41 | 0.17 | lasso | 9 | 0.20 | 3.6e-05 | -6.1 | -6.1 | 9.6e-10 | 0.54 | 0.52 | 0.47 | FALSE |
126 | NAcc | Dck | gene expression | ENSRNOG00000003296 | 0.51 | 0.10 | blup | 1646 | 0.22 | 1.1e-05 | -7.4 | 7.8 | 8.8e-15 | -0.75 | 0.41 | 0.58 | FALSE |
127 | NAcc | Rufy3 | gene expression | ENSRNOG00000003428 | 0.24 | 0.18 | top1 | 1 | 0.18 | 7.0e-05 | -7.2 | -7.2 | 4.3e-13 | 0.74 | 0.10 | 0.05 | FALSE |
128 | NAcc | RGD1559459 | gene expression | ENSRNOG00000042714 | 0.17 | 0.08 | lasso | 2 | 0.09 | 6.0e-03 | -6.2 | 6.0 | 1.5e-09 | 0.66 | 0.50 | 0.26 | TRUE |
129 | NAcc | Ugt2b10 | gene expression | ENSRNOG00000062781 | 0.17 | 0.07 | top1 | 1 | 0.07 | 1.3e-02 | -6.1 | 6.1 | 1.2e-09 | -0.65 | 0.10 | 0.05 | FALSE |
130 | NAcc2 | Sult1d1 | gene expression | ENSRNOG00000001960 | 0.16 | 0.13 | blup | 1921 | 0.15 | 1.2e-08 | -6.9 | -6.1 | 9.3e-10 | 0.61 | 0.32 | 0.68 | FALSE |
131 | NAcc2 | Alb | gene expression | ENSRNOG00000002911 | 0.37 | 0.28 | blup | 3892 | 0.43 | 6.3e-25 | -6.1 | -5.9 | 4.5e-09 | 0.51 | 0.47 | 0.53 | FALSE |
132 | NAcc2 | Dck | gene expression | ENSRNOG00000003296 | 0.34 | 0.41 | enet | 47 | 0.47 | 1.9e-28 | -7.6 | 7.4 | 1.6e-13 | -0.75 | 0.38 | 0.62 | FALSE |
133 | NAcc2 | Rufy3 | gene expression | ENSRNOG00000003428 | 0.22 | 0.24 | top1 | 1 | 0.24 | 5.7e-13 | -6.5 | -6.5 | 6.7e-11 | 0.70 | 1.00 | 0.00 | FALSE |
134 | NAcc2 | RGD1559459 | gene expression | ENSRNOG00000042714 | 0.13 | 0.08 | enet | 126 | 0.10 | 2.8e-06 | -6.6 | 5.8 | 7.2e-09 | -0.65 | 0.56 | 0.44 | FALSE |
135 | NAcc2 | Slc4a4 | isoform ratio | ENSRNOT00000004391 | 0.04 | 0.00 | blup | 1870 | 0.01 | 1.1e-01 | -6.6 | -7.2 | 8.6e-13 | 0.70 | 0.50 | 0.28 | FALSE |
136 | NAcc2 | Slc4a4 | intron excision ratio | chr14:18846136:18852915 | 0.08 | 0.03 | blup | 1870 | 0.05 | 7.3e-04 | -7.7 | -7.9 | 1.9e-15 | 0.80 | 0.46 | 0.49 | TRUE |
137 | NAcc2 | Slc4a4 | intron excision ratio | chr14:18848526:18852915 | 0.07 | 0.03 | top1 | 1 | 0.03 | 6.0e-03 | -6.7 | 6.7 | 2.0e-11 | -0.75 | 0.08 | 0.04 | FALSE |
138 | NAcc2 | Rufy3 | intron excision ratio | chr14:19465502:19489662 | 0.11 | 0.09 | blup | 1761 | 0.10 | 6.5e-06 | -6.6 | 6.8 | 8.2e-12 | -0.65 | 0.66 | 0.34 | FALSE |
139 | NAcc2 | Rufy3 | intron excision ratio | chr14:19465502:19506028 | 0.10 | 0.12 | lasso | 16 | 0.13 | 1.9e-07 | -6.1 | -6.5 | 6.2e-11 | 0.60 | 0.64 | 0.36 | FALSE |
140 | NAcc2 | Sult1d1 | mRNA stability | ENSRNOG00000001960 | 0.06 | 0.06 | blup | 1921 | 0.06 | 5.0e-04 | -6.6 | -6.6 | 3.7e-11 | 0.68 | 0.51 | 0.45 | FALSE |
141 | NAcc2 | Grsf1 | mRNA stability | ENSRNOG00000003392 | 0.07 | 0.05 | top1 | 1 | 0.05 | 1.5e-03 | -7.5 | -7.5 | 7.0e-14 | 0.72 | 0.10 | 0.07 | FALSE |
142 | OFC | Alb | gene expression | ENSRNOG00000002911 | 0.59 | 0.21 | lasso | 6 | 0.33 | 1.3e-08 | -6.1 | -5.3 | 1.1e-07 | 0.18 | 0.53 | 0.47 | TRUE |
143 | OFC | Dck | gene expression | ENSRNOG00000003296 | 0.85 | 0.44 | top1 | 1 | 0.44 | 1.2e-11 | -7.5 | 7.5 | 6.6e-14 | -0.74 | 0.46 | 0.49 | FALSE |
144 | OFC | Rufy3 | gene expression | ENSRNOG00000003428 | 0.17 | 0.05 | blup | 1665 | 0.06 | 1.8e-02 | -6.5 | -6.1 | 1.4e-09 | 0.57 | 0.48 | 0.11 | FALSE |
145 | PL | Alb | gene expression | ENSRNOG00000002911 | 0.75 | 0.25 | enet | 100 | 0.47 | 7.7e-13 | -6.1 | -5.4 | 6.2e-08 | 0.50 | 0.52 | 0.48 | FALSE |
146 | PL | Dck | gene expression | ENSRNOG00000003296 | 0.92 | 0.33 | top1 | 1 | 0.33 | 1.7e-08 | -7.5 | 7.5 | 6.8e-14 | -0.75 | 0.35 | 0.35 | FALSE |
147 | PL | Rufy3 | gene expression | ENSRNOG00000003428 | 0.30 | 0.06 | blup | 1665 | 0.12 | 1.1e-03 | -7.5 | -7.2 | 4.2e-13 | 0.69 | 0.52 | 0.34 | FALSE |
148 | PL | Uba6 | isoform ratio | ENSRNOT00000102184 | 0.18 | 0.00 | blup | 2335 | 0.08 | 5.7e-03 | -6.1 | 5.9 | 2.8e-09 | -0.51 | 0.39 | 0.28 | FALSE |
149 | PL | Alb | mRNA stability | ENSRNOG00000002911 | 0.17 | 0.12 | top1 | 1 | 0.12 | 1.1e-03 | -6.0 | -6.0 | 1.5e-09 | 0.32 | 0.18 | 0.05 | FALSE |
150 | PL | Cenpc | mRNA stability | ENSRNOG00000021776 | 0.22 | 0.03 | blup | 2193 | 0.08 | 6.8e-03 | -6.1 | -5.6 | 1.6e-08 | 0.66 | 0.37 | 0.44 | FALSE |
151 | PL2 | Ugt2b10 | alternative TSS | ENSRNOT00000002724 | 0.08 | 0.06 | top1 | 1 | 0.06 | 2.4e-04 | -6.5 | 6.5 | 9.4e-11 | -0.62 | 0.12 | 0.04 | FALSE |
152 | PL2 | Rufy3 | alternative TSS | ENSRNOT00000004776 | 0.04 | 0.01 | top1 | 1 | 0.01 | 7.7e-02 | -7.5 | 7.5 | 9.0e-14 | -0.72 | 0.07 | 0.04 | FALSE |
153 | PL2 | Rufy3 | alternative TSS | ENSRNOT00000004776 | 0.04 | 0.01 | blup | 1761 | 0.01 | 1.0e-01 | -7.5 | 7.5 | 7.0e-14 | -0.72 | 0.40 | 0.32 | FALSE |
154 | PL2 | Sult1d1 | gene expression | ENSRNOG00000001960 | 0.10 | 0.05 | top1 | 1 | 0.05 | 1.1e-03 | -6.4 | -6.4 | 1.2e-10 | 0.70 | 0.08 | 0.04 | FALSE |
155 | PL2 | Ugt2b10 | gene expression | ENSRNOG00000001990 | 0.06 | 0.05 | blup | 3017 | 0.05 | 1.2e-03 | -7.0 | 6.4 | 1.6e-10 | -0.64 | 0.59 | 0.36 | FALSE |
156 | PL2 | Dck | gene expression | ENSRNOG00000003296 | 0.55 | 0.49 | lasso | 42 | 0.53 | 6.4e-33 | -7.4 | 7.5 | 7.1e-14 | -0.06 | 0.40 | 0.60 | FALSE |
157 | PL2 | Rufy3 | gene expression | ENSRNOG00000003428 | 0.17 | 0.16 | lasso | 38 | 0.19 | 2.1e-10 | -7.4 | -7.7 | 1.6e-14 | -0.39 | 0.43 | 0.57 | FALSE |
158 | PL2 | RGD1559459 | gene expression | ENSRNOG00000042714 | 0.15 | 0.10 | top1 | 1 | 0.10 | 3.1e-06 | -6.4 | 6.4 | 1.1e-10 | -0.63 | 0.48 | 0.25 | FALSE |
159 | PL2 | NA | gene expression | ENSRNOG00000068298 | 0.12 | 0.13 | top1 | 1 | 0.13 | 2.3e-07 | -6.6 | -6.6 | 4.8e-11 | 0.71 | 0.88 | 0.01 | FALSE |
160 | PL2 | Rufy3 | isoform ratio | ENSRNOT00000004776 | 0.09 | 0.07 | blup | 1761 | 0.09 | 1.7e-05 | -7.5 | 7.3 | 2.3e-13 | -0.70 | 0.56 | 0.43 | FALSE |
161 | PL2 | Rufy3 | isoform ratio | ENSRNOT00000100042 | 0.08 | 0.04 | blup | 1761 | 0.04 | 3.5e-03 | -7.5 | -6.8 | 1.1e-11 | 0.64 | 0.56 | 0.33 | FALSE |
162 | PL2 | Rufy3 | intron excision ratio | chr14:19465502:19489662 | 0.10 | 0.13 | top1 | 1 | 0.13 | 1.9e-07 | -7.5 | 7.5 | 6.9e-14 | -0.72 | 0.42 | 0.40 | FALSE |
163 | PL2 | Rufy3 | intron excision ratio | chr14:19465502:19506028 | 0.15 | 0.15 | blup | 1761 | 0.15 | 1.3e-08 | -6.5 | -6.6 | 5.3e-11 | 0.62 | 0.75 | 0.25 | FALSE |
h2: Heritability estimate for the given transcriptomic model. PP3: Posterior probability of two distinct causal variants. PP4: Posterior probability of a single shared causal variant. joint: Whether the RNA phenotype is in the joint model.