Best TWAS P = 4.55e-09 · Best GWAS P= 3.04e-07 conditioned to 0.00e+00
| Tissue | Gene | RNA modality | RNA phenotype | h2 | # weights | Model R2 | Model R2 P | TWAS Z | TWAS P | Coloc P | Joint |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Adipose | Ap4s1 | alternative polyA | XM_063262180.1 | 0.03 | 1871 | 0.03 | 6.7e-04 | 5.26 | 1.45e-07 | 0.32 | FALSE |
| Adipose | Ap4s1 | alternative polyA | XM_063262181.1 | 0.03 | 1871 | 0.03 | 6.8e-04 | -5.25 | 1.56e-07 | 0.3 | FALSE |
| Adipose | LOC134479180 | gene expression | LOC134479180 | 0.04 | 1756 | 0.02 | 1.2e-03 | -5.38 | 7.35e-08 | 0.43 | FALSE |
| BLA | Ap4s1 | alternative polyA | XM_063262180.1 | 0.08 | 1871 | 0.05 | 1.5e-03 | -5.44 | 5.43e-08 | 0.4 | FALSE |
| BLA | Ap4s1 | alternative polyA | XM_063262181.1 | 0.09 | 1871 | 0.05 | 1.7e-03 | 5.43 | 5.48e-08 | 0.39 | FALSE |
| BLA | G2e3 | gene expression | G2e3 | 0.13 | 38 | 0.07 | 9.8e-05 | -5.77 | 7.74e-09 | 0.63 | FALSE |
| Brain | G2e3 | gene expression | G2e3 | 0.27 | 14 | 0.16 | 7.0e-15 | -5.54 | 2.96e-08 | 0.61 | TRUE |
| Brain | Coch | isoform ratio | XM_063262102.1 | 0.06 | 1886 | 0.04 | 6.9e-05 | 5.21 | 1.86e-07 | 0.42 | FALSE |
| Liver | Akap6 | alternative TSS | NM_022618.2 | 0.04 | 2231 | 0.02 | 3.7e-03 | -5.28 | 1.29e-07 | 0.58 | FALSE |
| Liver | Akap6 | alternative TSS | NM_022618.2 | 0.04 | 2231 | 0.02 | 4.0e-03 | -5.37 | 7.92e-08 | 0.5 | FALSE |
| NAcc | G2e3 | gene expression | G2e3 | 0.11 | 6 | 0.11 | 4.5e-16 | -5.31 | 1.09e-07 | 0.65 | FALSE |
| NAcc | Coch | mRNA stability | Coch | 0.08 | 6 | 0.04 | 3.2e-06 | 5.86 | 4.55e-09 | 0.57 | TRUE |
| OFC | Nubpl | alternative TSS | XM_008764655.4 | 0.16 | 1731 | 0.07 | 9.4e-03 | 5.22 | 1.76e-07 | 0.23 | FALSE |
| PL | G2e3 | gene expression | G2e3 | 0.17 | 12 | 0.14 | 8.6e-15 | -5.31 | 1.08e-07 | 0.66 | TRUE |
| pVTA | LOC134479180 | mRNA stability | LOC134479180 | 0.05 | 1756 | 0.02 | 5.4e-03 | -5.38 | 7.61e-08 | 0.38 | FALSE |