Best TWAS P = 1.41e-09 · Best GWAS P= 7.77e-09 conditioned to NaN
| Tissue | Gene | RNA modality | RNA phenotype | h2 | # weights | Model R2 | Model R2 P | TWAS Z | TWAS P | Coloc P | Joint |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Adipose | Ccpg1 | alternative polyA | NM_001401186.1 | 0.04 | 1390 | 0.03 | 2.0e-04 | -5.94 | 2.89e-09 | 0.64 | FALSE |
| Adipose | Ccpg1 | alternative polyA | NM_001401186.1 | 0.02 | 1390 | 0.01 | 1.4e-02 | -6 | 1.96e-09 | 0.52 | FALSE |
| Adipose | Ccpg1 | alternative polyA | XM_006243332.5 | 0.02 | 1390 | 0.01 | 1.7e-02 | 5.98 | 2.30e-09 | 0.51 | FALSE |
| Adipose | Prtg | alternative TSS | XM_039081519.2 | 0.05 | 1399 | 0.02 | 1.4e-03 | 5.91 | 3.46e-09 | 0.44 | FALSE |
| Adipose | Prtg | alternative TSS | XM_039081517.2 | 0.03 | 1399 | 0.02 | 3.4e-03 | -5.73 | 9.96e-09 | 0.35 | FALSE |
| Adipose | Prtg | alternative TSS | XM_039081519.2 | 0.04 | 1399 | 0.02 | 5.7e-03 | 5.93 | 2.97e-09 | 0.47 | FALSE |
| Adipose | Pygo1 | gene expression | Pygo1 | 0.02 | 1336 | 0.02 | 2.5e-03 | -6.05 | 1.41e-09 | 0.52 | TRUE |
| Adipose | Pigb | isoform ratio | NM_001108166.3 | 0.04 | 1541 | 0.03 | 1.6e-04 | -6.02 | 1.72e-09 | 0.61 | FALSE |
| Adipose | Pigb | isoform ratio | XM_063265549.1 | 0.04 | 1541 | 0.03 | 2.1e-04 | 6.01 | 1.83e-09 | 0.62 | FALSE |
| Adipose | Prtg | isoform ratio | XM_039081519.2 | 0.02 | 1399 | 0.02 | 6.0e-03 | 5.93 | 3.04e-09 | 0.41 | FALSE |
| BLA | Khdc3 | gene expression | Khdc3 | 0.12 | 1815 | 0.09 | 2.4e-05 | 5.6 | 2.09e-08 | 0.68 | FALSE |
| BLA | Rab27a | gene expression | Rab27a | 0.4 | 27 | 0.42 | 5.7e-24 | 5.49 | 3.96e-08 | 0.85 | FALSE |
| BLA | Dnaaf4 | isoform ratio | NM_001007010.1 | 0.1 | 27 | 0.06 | 4.6e-04 | -5.48 | 4.30e-08 | 0.7 | FALSE |
| Brain | Nedd4 | gene expression | Nedd4 | 0.1 | 1313 | 0.09 | 1.0e-08 | 5.3 | 1.13e-07 | 0.06 | FALSE |
| Brain | Rab27a | gene expression | Rab27a | 0.15 | 1 | 0.17 | 2.1e-15 | 5.63 | 1.80e-08 | 0.88 | FALSE |
| Brain | Dnaaf4 | intron excision ratio | chr8_82581359_82583858 | 0.03 | 1383 | 0.01 | 3.4e-02 | -5.62 | 1.90e-08 | 0.34 | FALSE |
| Brain | Pygo1 | intron excision ratio | chr8_82581359_82583858 | 0.03 | 1377 | 0.01 | 3.5e-02 | -5.63 | 1.85e-08 | 0.34 | FALSE |
| Eye | Pigb | isoform ratio | NM_001108166.3 | 0.52 | 1 | 0.06 | 4.3e-02 | -5.52 | 3.35e-08 | 0.06 | FALSE |
| IC | Khdc3 | gene expression | Khdc3 | 0.07 | 1815 | 0.07 | 5.3e-04 | 5.71 | 1.12e-08 | 0.47 | FALSE |
| IC | Pigb | gene expression | Pigb | 0.21 | 43 | 0.22 | 1.9e-09 | 5.77 | 7.89e-09 | 0.74 | FALSE |
| IC | Rab27a | gene expression | Rab27a | 0.2 | 1 | 0.22 | 8.7e-10 | 5.56 | 2.74e-08 | 0.82 | FALSE |
| IC | Wdr72 | gene expression | Wdr72 | 0.07 | 2522 | 0.01 | 9.4e-02 | 5.34 | 9.20e-08 | 0.3 | TRUE |
| IC | Ccpg1 | isoform ratio | NM_001401188.1 | 0.14 | 6 | 0.08 | 2.4e-04 | -5.6 | 2.12e-08 | 0.69 | TRUE |
| IL | Rab27a | gene expression | Rab27a | 0.32 | 1 | 0.2 | 1.8e-05 | 5.64 | 1.71e-08 | 0.23 | FALSE |
| IL | Ccpg1 | isoform ratio | XM_063265779.1 | 0.15 | 1 | 0.09 | 3.7e-03 | 5.61 | 1.99e-08 | 0.07 | FALSE |
| Liver | Ccpg1 | gene expression | Ccpg1 | 0.12 | 18 | 0.13 | 1.5e-14 | -5.29 | 1.19e-07 | 0.56 | TRUE |
| Liver | Pierce2 | gene expression | Pierce2 | 0.06 | 18 | 0.05 | 7.2e-06 | -5.61 | 1.99e-08 | 0.64 | FALSE |
| Liver | Ccpg1 | mRNA stability | Ccpg1 | 0.07 | 28 | 0.09 | 1.1e-09 | -5.55 | 2.93e-08 | 0.62 | FALSE |
| NAcc | Rab27a | gene expression | Rab27a | 0.09 | 22 | 0.1 | 5.5e-15 | 5.5 | 3.71e-08 | 0.84 | FALSE |
| NAcc | Rsl24d1 | gene expression | Rsl24d1 | 0.02 | 1810 | 0.01 | 1.8e-03 | -5.45 | 4.93e-08 | 0.62 | FALSE |
| NAcc | Ccpg1 | isoform ratio | NM_001401188.1 | 0.13 | 30 | 0.15 | 4.4e-22 | -5.48 | 4.27e-08 | 0.24 | FALSE |
| NAcc | Ccpg1 | intron excision ratio | chr8_82629952_82632051 | 0.02 | 2 | 0.01 | 2.7e-03 | -5.44 | 5.42e-08 | 0.68 | FALSE |
| NAcc | Dnaaf4 | intron excision ratio | chr8_82579838_82580225 | 0.03 | 1 | 0.03 | 1.0e-04 | -5.66 | 1.54e-08 | 0.54 | FALSE |
| NAcc | Dnaaf4 | intron excision ratio | chr8_82579838_82581134 | 0.04 | 14 | 0.04 | 2.6e-07 | 5.5 | 3.87e-08 | 0.75 | FALSE |
| NAcc | Dnaaf4 | intron excision ratio | chr8_82580358_82581134 | 0.02 | 1383 | 0.02 | 1.6e-03 | -5.64 | 1.75e-08 | 0.53 | FALSE |
| OFC | Rab27a | gene expression | Rab27a | 0.37 | 1 | 0.15 | 2.5e-04 | 5.6 | 2.17e-08 | 0.08 | FALSE |
| OFC | Ccpg1 | isoform ratio | NM_001401188.1 | 0.22 | 1 | 0.06 | 1.4e-02 | -5.6 | 2.17e-08 | 0.06 | FALSE |
| PL | Ccpg1 | alternative polyA | NM_001401186.1 | 0.03 | 1431 | 0.02 | 1.9e-03 | -5.43 | 5.49e-08 | 0.45 | FALSE |
| PL | Ccpg1 | alternative polyA | XM_006243332.5 | 0.13 | 1431 | 0.15 | 3.6e-16 | 5.69 | 1.30e-08 | 0.44 | FALSE |
| PL | Dnaaf4 | gene expression | Dnaaf4 | 0.02 | 1 | 0.02 | 6.7e-03 | -5.63 | 1.80e-08 | 0.08 | FALSE |
| PL | Rab27a | gene expression | Rab27a | 0.24 | 23 | 0.32 | 3.4e-35 | 5.59 | 2.22e-08 | 0.85 | FALSE |
| PL | Ccpg1 | isoform ratio | XM_008766317.4 | 0.02 | 1431 | 0.01 | 9.4e-03 | -5.25 | 1.52e-07 | 0.19 | FALSE |
| pVTA | Ccpg1 | alternative polyA | XM_006243332.5 | 0.06 | 1431 | 0.06 | 2.1e-05 | 5.42 | 6.00e-08 | 0.6 | FALSE |
| pVTA | Dnaaf4 | alternative polyA | XM_006243329.5 | 0.03 | 1383 | 0.03 | 1.5e-03 | 5.9 | 3.71e-09 | 0.42 | FALSE |
| pVTA | Rsl24d1 | gene expression | Rsl24d1 | 0.07 | 1 | 0.08 | 8.4e-07 | -5.67 | 1.39e-08 | 0.89 | FALSE |
| pVTA | Dnaaf4 | isoform ratio | NM_001007010.1 | 0.1 | 1383 | 0.09 | 1.6e-07 | -5.97 | 2.41e-09 | 0.51 | FALSE |
| pVTA | Dnaaf4 | isoform ratio | XM_006243329.5 | 0.12 | 1383 | 0.1 | 1.3e-08 | 6.01 | 1.85e-09 | 0.46 | FALSE |
| RMTg | Dnaaf4 | isoform ratio | NM_001007010.1 | 0.13 | 1383 | 0.07 | 6.9e-03 | -5.61 | 1.97e-08 | 0.38 | FALSE |
| RMTg | Dnaaf4 | isoform ratio | XM_006243329.5 | 0.11 | 36 | 0.06 | 1.4e-02 | 5.35 | 8.69e-08 | 0.49 | FALSE |