Best TWAS P=5.351703e-09 · Best GWAS P=2.673805e-10 conditioned to 1
# | Tissue | Gene | Modality | RNA phenotype | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | Adipose | Aptx | alternative TSS | ENSRNOT00000090891 | 0.03 | 0.00 | blup | 2064 | 0.01 | 2.7e-02 | 5.1 | -5.2 | 2.1e-07 | -0.96 | 0.35 | 0.52 | FALSE |
2 | Adipose | Dnaja1 | gene expression | ENSRNOG00000007029 | 0.13 | 0.09 | top1 | 1 | 0.09 | 6.3e-10 | 5.1 | 5.1 | 2.6e-07 | 0.96 | 0.49 | 0.51 | FALSE |
3 | Adipose | Stoml2 | gene expression | ENSRNOG00000009535 | 0.03 | 0.01 | lasso | 13 | 0.01 | 9.5e-03 | 5.5 | 5.5 | 3.1e-08 | 0.98 | 0.32 | 0.56 | FALSE |
4 | Adipose | Nol6 | gene expression | ENSRNOG00000010409 | 0.05 | 0.03 | top1 | 1 | 0.03 | 1.7e-04 | 5.6 | 5.6 | 2.4e-08 | 0.99 | 0.08 | 0.10 | FALSE |
5 | Adipose | Galt | gene expression | ENSRNOG00000014766 | 0.23 | 0.23 | lasso | 4 | 0.24 | 1.4e-26 | 5.3 | -5.2 | 1.6e-07 | -0.97 | 0.34 | 0.66 | FALSE |
6 | Adipose | Npr2 | gene expression | ENSRNOG00000015991 | 0.04 | 0.01 | blup | 1828 | 0.01 | 2.3e-02 | 5.5 | -5.3 | 1.5e-07 | -0.93 | 0.33 | 0.48 | FALSE |
7 | Adipose | Rgp1 | gene expression | ENSRNOG00000016309 | 0.02 | 0.01 | top1 | 1 | 0.01 | 2.1e-02 | 5.3 | 5.3 | 1.1e-07 | 0.88 | 0.06 | 0.03 | FALSE |
8 | Adipose | NA | gene expression | ENSRNOG00000022601 | 0.28 | 0.21 | lasso | 18 | 0.22 | 1.5e-23 | 5.5 | -5.3 | 1.1e-07 | -0.89 | 0.32 | 0.68 | FALSE |
9 | Adipose | B4galt1 | gene expression | ENSRNOG00000059461 | 0.06 | 0.03 | top1 | 1 | 0.03 | 1.7e-04 | 5.1 | 5.1 | 2.8e-07 | 0.95 | 0.08 | 0.06 | FALSE |
10 | Adipose | NA | gene expression | ENSRNOG00000062709 | 0.33 | 0.34 | blup | 2116 | 0.35 | 1.2e-39 | 5.1 | -5.1 | 3.2e-07 | -0.95 | 0.32 | 0.68 | FALSE |
11 | Adipose | Aptx | isoform ratio | ENSRNOT00000046463 | 0.42 | 0.36 | enet | 191 | 0.37 | 4.6e-43 | 5.1 | -5.3 | 1.1e-07 | -0.97 | 0.25 | 0.75 | FALSE |
12 | Adipose | Aptx | isoform ratio | ENSRNOT00000094147 | 0.50 | 0.41 | enet | 178 | 0.41 | 1.7e-49 | 5.6 | 5.4 | 5.8e-08 | 0.97 | 0.25 | 0.75 | FALSE |
13 | Adipose | Unc13b | isoform ratio | ENSRNOT00000078274 | 0.08 | 0.05 | blup | 1658 | 0.07 | 1.6e-08 | 5.3 | -5.3 | 9.7e-08 | -0.94 | 0.43 | 0.57 | FALSE |
14 | Adipose | Aptx | intron excision ratio | chr5:55811580:55813276 | 0.22 | 0.17 | enet | 473 | 0.17 | 3.4e-18 | 5.1 | -5.2 | 2.3e-07 | -0.95 | 0.27 | 0.73 | FALSE |
15 | Adipose | Aptx | intron excision ratio | chr5:55811580:55813754 | 0.59 | 0.41 | enet | 251 | 0.41 | 1.8e-48 | 5.1 | 5.2 | 2.5e-07 | 0.93 | 0.27 | 0.73 | FALSE |
16 | Adipose | Aptx | intron excision ratio | chr5:55813800:55815552 | 0.04 | 0.03 | top1 | 1 | 0.03 | 1.3e-04 | 5.1 | 5.1 | 3.2e-07 | 0.95 | 0.10 | 0.07 | FALSE |
17 | Adipose | Ddx58 | mRNA stability | ENSRNOG00000006384 | 0.06 | 0.03 | top1 | 1 | 0.03 | 2.6e-04 | 5.1 | -5.1 | 2.6e-07 | -0.93 | 0.28 | 0.14 | FALSE |
18 | Adipose | Ubap1 | mRNA stability | ENSRNOG00000012004 | 0.06 | 0.02 | lasso | 10 | 0.03 | 3.9e-04 | 5.3 | 5.4 | 8.7e-08 | 0.97 | 0.35 | 0.62 | FALSE |
19 | Adipose | Il11ra1 | mRNA stability | ENSRNOG00000015068 | 0.03 | 0.01 | top1 | 1 | 0.01 | 4.0e-02 | 5.3 | -5.3 | 1.1e-07 | -0.99 | 0.04 | 0.03 | FALSE |
20 | Adipose | Atp8b5p | mRNA stability | ENSRNOG00000021704 | 0.07 | 0.06 | top1 | 1 | 0.06 | 2.6e-07 | 5.7 | 5.7 | 1.2e-08 | 0.94 | 0.20 | 0.79 | FALSE |
21 | BLA | Aptx | gene expression | ENSRNOG00000006582 | 0.38 | 0.19 | enet | 109 | 0.21 | 2.4e-11 | 5.4 | 5.4 | 8.2e-08 | 0.98 | 0.24 | 0.76 | FALSE |
22 | BLA | Fam219a | gene expression | ENSRNOG00000039559 | 0.09 | 0.05 | blup | 1288 | 0.06 | 2.9e-04 | 5.5 | 5.5 | 3.2e-08 | 0.99 | 0.33 | 0.62 | FALSE |
23 | BLA | Tmem215 | gene expression | ENSRNOG00000042246 | 0.19 | 0.15 | top1 | 1 | 0.15 | 1.3e-08 | 5.4 | 5.4 | 7.4e-08 | 0.94 | 0.25 | 0.75 | FALSE |
24 | BLA | NA | gene expression | ENSRNOG00000068351 | 0.06 | 0.03 | top1 | 1 | 0.03 | 1.3e-02 | 5.5 | -5.5 | 4.7e-08 | -0.99 | 0.06 | 0.04 | FALSE |
25 | BLA | Smim27 | gene expression | ENSRNOG00000069822 | 0.06 | 0.02 | blup | 2227 | 0.04 | 3.9e-03 | 4.7 | -5.7 | 1.4e-08 | -0.92 | 0.53 | 0.36 | FALSE |
26 | BLA | Aptx | isoform ratio | ENSRNOT00000094147 | 0.76 | 0.49 | enet | 90 | 0.55 | 6.3e-35 | 5.4 | 5.2 | 2.0e-07 | 0.96 | 0.25 | 0.75 | FALSE |
27 | BLA | Unc13b | isoform ratio | ENSRNOT00000078274 | 0.07 | 0.05 | top1 | 1 | 0.05 | 1.3e-03 | 5.7 | -5.7 | 1.4e-08 | -0.98 | 0.07 | 0.05 | FALSE |
28 | BLA | Tpm2 | isoform ratio | ENSRNOT00000022801 | 0.12 | 0.05 | blup | 1658 | 0.09 | 1.9e-05 | 5.5 | 5.4 | 7.9e-08 | 0.96 | 0.31 | 0.69 | FALSE |
29 | BLA | Aptx | intron excision ratio | chr5:55811580:55813276 | 0.16 | 0.09 | blup | 2064 | 0.11 | 2.1e-06 | 5.4 | -5.1 | 2.7e-07 | -0.94 | 0.46 | 0.54 | FALSE |
30 | BLA | Vcp | mRNA stability | ENSRNOG00000034242 | 0.06 | 0.03 | blup | 1579 | 0.03 | 1.2e-02 | 5.5 | 5.5 | 4.2e-08 | 0.98 | 0.34 | 0.42 | FALSE |
31 | Brain | Ddx58 | alternative TSS | ENSRNOT00000060765 | 0.07 | 0.06 | enet | 11 | 0.09 | 8.1e-09 | -4.3 | -5.4 | 8.7e-08 | -0.88 | 0.80 | 0.20 | FALSE |
32 | Brain | Ddx58 | alternative TSS | ENSRNOT00000107881 | 0.07 | 0.06 | enet | 11 | 0.09 | 9.8e-09 | -4.3 | 5.4 | 7.4e-08 | 0.88 | 0.78 | 0.22 | FALSE |
33 | Brain | Unc13b | gene expression | ENSRNOG00000008237 | 0.04 | 0.03 | lasso | 2 | 0.03 | 8.9e-04 | 5.7 | 5.7 | 1.2e-08 | 0.99 | 0.32 | 0.60 | FALSE |
34 | Brain | Nudt2 | gene expression | ENSRNOG00000013110 | 0.08 | 0.05 | lasso | 7 | 0.05 | 2.1e-05 | 5.7 | -5.6 | 1.7e-08 | -0.99 | 0.27 | 0.73 | FALSE |
35 | Brain | Npr2 | gene expression | ENSRNOG00000015991 | 0.08 | 0.06 | top1 | 1 | 0.06 | 6.1e-06 | 5.7 | 5.7 | 1.2e-08 | 0.95 | 0.09 | 0.69 | FALSE |
36 | Brain | Ccdc107 | gene expression | ENSRNOG00000017253 | 0.09 | 0.09 | top1 | 1 | 0.09 | 1.7e-08 | 5.3 | -5.3 | 1.1e-07 | -0.94 | 0.49 | 0.49 | FALSE |
37 | Brain | Atp8b5p | gene expression | ENSRNOG00000021704 | 0.14 | 0.14 | lasso | 44 | 0.14 | 9.4e-13 | 5.6 | 5.6 | 1.8e-08 | 0.98 | 0.28 | 0.72 | FALSE |
38 | Brain | Ccl21 | gene expression | ENSRNOG00000034290 | 0.05 | 0.02 | enet | 6 | 0.03 | 1.1e-03 | 4.6 | -5.3 | 1.1e-07 | -0.93 | 0.51 | 0.47 | FALSE |
39 | Brain | Fam219a | gene expression | ENSRNOG00000039559 | 0.04 | 0.02 | top1 | 1 | 0.02 | 3.7e-03 | 5.6 | 5.6 | 2.0e-08 | 0.98 | 0.05 | 0.05 | FALSE |
40 | Brain | Tmem215 | gene expression | ENSRNOG00000042246 | 0.27 | 0.22 | top1 | 1 | 0.22 | 3.8e-20 | 5.2 | 5.2 | 2.0e-07 | 0.96 | 0.46 | 0.54 | FALSE |
41 | Brain | Dcaf12 | gene expression | ENSRNOG00000050790 | 0.28 | 0.15 | top1 | 1 | 0.15 | 3.6e-14 | 5.3 | 5.3 | 1.2e-07 | 0.99 | 0.75 | 0.25 | FALSE |
42 | Brain | Aptx | isoform ratio | ENSRNOT00000046463 | 0.48 | 0.44 | top1 | 1 | 0.44 | 5.9e-44 | 5.7 | -5.7 | 1.3e-08 | -0.96 | 0.05 | 0.95 | FALSE |
43 | Brain | Aptx | isoform ratio | ENSRNOT00000094147 | 0.54 | 0.47 | top1 | 1 | 0.47 | 4.0e-49 | 5.3 | 5.3 | 1.0e-07 | 0.96 | 0.28 | 0.72 | FALSE |
44 | Brain | Unc13b | isoform ratio | ENSRNOT00000078274 | 0.10 | 0.08 | top1 | 1 | 0.08 | 4.8e-08 | 5.7 | -5.7 | 1.2e-08 | -0.98 | 0.22 | 0.78 | FALSE |
45 | Brain | Aptx | intron excision ratio | chr5:55811580:55813276 | 0.10 | 0.07 | top1 | 1 | 0.07 | 7.8e-07 | 5.3 | -5.3 | 1.3e-07 | -0.96 | 0.34 | 0.66 | FALSE |
46 | Brain | Fam214b | intron excision ratio | chr5:57265299:57268368 | 0.05 | 0.04 | top1 | 1 | 0.04 | 8.0e-05 | 5.6 | -5.6 | 2.1e-08 | -0.97 | 0.14 | 0.24 | FALSE |
47 | Brain | Phf24 | mRNA stability | ENSRNOG00000000129 | 0.38 | 0.27 | top1 | 1 | 0.27 | 3.2e-25 | 5.6 | -5.6 | 1.7e-08 | -0.99 | 0.39 | 0.61 | FALSE |
48 | Brain | Unc13b | mRNA stability | ENSRNOG00000008237 | 0.20 | 0.15 | lasso | 9 | 0.18 | 3.8e-16 | 5.4 | -5.3 | 1.1e-07 | -0.96 | 0.39 | 0.61 | FALSE |
49 | Brain | Fam214b | mRNA stability | ENSRNOG00000009323 | 0.03 | 0.03 | top1 | 1 | 0.03 | 1.5e-03 | 5.7 | 5.7 | 1.3e-08 | 0.98 | 0.06 | 0.04 | FALSE |
50 | Brain | Ccdc107 | mRNA stability | ENSRNOG00000017253 | 0.10 | 0.11 | blup | 1617 | 0.13 | 5.4e-12 | 5.6 | 5.2 | 1.7e-07 | 0.95 | 0.29 | 0.71 | FALSE |
51 | Brain | Tesk1 | mRNA stability | ENSRNOG00000053729 | 0.08 | 0.09 | enet | 18 | 0.09 | 1.3e-08 | 4.6 | 5.3 | 1.3e-07 | 0.96 | 0.54 | 0.47 | FALSE |
52 | Eye | Ccl19 | alternative polyA | ENSRNOT00000020982 | 0.29 | 0.11 | top1 | 1 | 0.11 | 1.1e-02 | 5.6 | -5.6 | 2.2e-08 | -0.98 | 0.08 | 0.06 | FALSE |
53 | Eye | Ccl19 | alternative polyA | ENSRNOT00000101776 | 0.33 | 0.12 | top1 | 1 | 0.12 | 7.1e-03 | 5.6 | 5.6 | 2.2e-08 | 0.98 | 0.08 | 0.06 | FALSE |
54 | Eye | Ddx58 | gene expression | ENSRNOG00000006384 | 0.37 | 0.23 | top1 | 1 | 0.23 | 2.3e-04 | 5.2 | -5.2 | 2.0e-07 | -0.89 | 0.13 | 0.06 | FALSE |
55 | Eye | Nudt2 | gene expression | ENSRNOG00000013110 | 0.37 | 0.19 | top1 | 1 | 0.19 | 6.8e-04 | 5.8 | -5.8 | 5.4e-09 | -0.99 | 0.08 | 0.07 | TRUE |
56 | Eye | Tmem215 | gene expression | ENSRNOG00000042246 | 0.27 | 0.21 | top1 | 1 | 0.21 | 3.2e-04 | 5.2 | 5.2 | 2.2e-07 | 0.91 | 0.12 | 0.06 | FALSE |
57 | Eye | Gne | isoform ratio | ENSRNOT00000115719 | 0.62 | 0.26 | enet | 24 | 0.27 | 4.4e-05 | 4.4 | 5.2 | 2.3e-07 | 0.90 | 0.52 | 0.42 | FALSE |
58 | Eye | Aptx | intron excision ratio | chr5:55811580:55813754 | 0.86 | 0.22 | enet | 158 | 0.24 | 1.5e-04 | 4.5 | 5.2 | 2.4e-07 | 0.94 | 0.46 | 0.42 | FALSE |
59 | Eye | Fam214b | mRNA stability | ENSRNOG00000009323 | 0.33 | 0.11 | top1 | 1 | 0.11 | 1.0e-02 | 5.6 | 5.6 | 2.0e-08 | 0.98 | 0.10 | 0.06 | FALSE |
60 | Eye | Ccdc107 | mRNA stability | ENSRNOG00000017253 | 0.35 | 0.13 | enet | 65 | 0.16 | 2.0e-03 | 5.6 | 5.6 | 2.8e-08 | 0.97 | 0.32 | 0.39 | FALSE |
61 | IL | Phf24 | gene expression | ENSRNOG00000000129 | 0.17 | 0.12 | enet | 6 | 0.14 | 2.6e-04 | 6.0 | 5.8 | 6.7e-09 | 0.98 | 0.38 | 0.50 | FALSE |
62 | IL | Ccl21 | gene expression | ENSRNOG00000034290 | 0.31 | 0.26 | top1 | 1 | 0.26 | 5.3e-07 | 5.6 | -5.6 | 1.9e-08 | -0.98 | 0.16 | 0.18 | FALSE |
63 | IL | NA | gene expression | ENSRNOG00000068351 | 0.15 | 0.10 | blup | 1344 | 0.10 | 2.0e-03 | 5.6 | -5.5 | 3.3e-08 | -0.98 | 0.33 | 0.50 | FALSE |
64 | IL | Unc13b | isoform ratio | ENSRNOT00000078274 | 0.29 | 0.23 | lasso | 4 | 0.27 | 4.0e-07 | 4.3 | -5.1 | 2.7e-07 | -0.93 | 0.48 | 0.51 | FALSE |
65 | IL | Phf24 | mRNA stability | ENSRNOG00000000129 | 0.19 | 0.07 | enet | 9 | 0.12 | 1.1e-03 | 5.6 | -5.6 | 2.4e-08 | -0.98 | 0.31 | 0.48 | FALSE |
66 | IL | Gne | mRNA stability | ENSRNOG00000014365 | 0.41 | 0.34 | lasso | 6 | 0.35 | 3.3e-09 | 5.5 | -5.2 | 2.0e-07 | -0.94 | 0.33 | 0.67 | FALSE |
67 | LHb | Aco1 | gene expression | ENSRNOG00000005849 | 0.21 | 0.05 | blup | 2235 | 0.08 | 6.5e-03 | -4.3 | 5.3 | 1.3e-07 | 0.83 | 0.60 | 0.23 | FALSE |
68 | LHb | Ddx58 | gene expression | ENSRNOG00000006384 | 0.34 | 0.19 | top1 | 1 | 0.19 | 2.5e-05 | 5.4 | -5.4 | 7.2e-08 | -0.91 | 0.13 | 0.09 | FALSE |
69 | Liver | Aptx | alternative TSS | ENSRNOT00000046463 | 0.05 | 0.02 | top1 | 1 | 0.02 | 4.0e-03 | 5.1 | 5.1 | 3.1e-07 | 0.96 | 0.13 | 0.10 | FALSE |
70 | Liver | Pigo | gene expression | ENSRNOG00000009930 | 0.10 | 0.09 | enet | 43 | 0.11 | 1.1e-11 | 4.7 | 5.2 | 1.8e-07 | 0.92 | 0.95 | 0.05 | FALSE |
71 | Liver | Ccdc107 | gene expression | ENSRNOG00000017253 | 0.26 | 0.15 | enet | 67 | 0.18 | 1.1e-19 | 5.3 | -5.3 | 9.5e-08 | -0.87 | 0.25 | 0.75 | FALSE |
72 | Liver | Atp8b5p | gene expression | ENSRNOG00000021704 | 0.42 | 0.34 | enet | 516 | 0.38 | 7.5e-45 | 5.7 | 5.1 | 2.7e-07 | 0.93 | 0.29 | 0.71 | FALSE |
73 | Liver | Ccl21 | gene expression | ENSRNOG00000034290 | 0.09 | 0.08 | top1 | 1 | 0.08 | 4.7e-09 | 5.5 | 5.5 | 3.9e-08 | 0.98 | 0.61 | 0.39 | FALSE |
74 | Liver | Dcaf12 | gene expression | ENSRNOG00000050790 | 0.04 | 0.02 | enet | 46 | 0.02 | 2.0e-03 | 5.3 | 5.4 | 5.8e-08 | 0.98 | 0.20 | 0.68 | FALSE |
75 | Liver | NA | gene expression | ENSRNOG00000063741 | 0.13 | 0.09 | enet | 375 | 0.09 | 3.5e-10 | 5.5 | -5.5 | 2.9e-08 | -0.95 | 0.22 | 0.78 | FALSE |
76 | Liver | Ccl27 | isoform ratio | ENSRNOT00000060594 | 0.13 | 0.10 | enet | 54 | 0.13 | 8.2e-14 | 4.7 | -5.4 | 7.8e-08 | -0.93 | 0.60 | 0.40 | FALSE |
77 | Liver | Ddx58 | intron excision ratio | chr5:55347696:55349132 | 0.04 | 0.02 | blup | 2296 | 0.03 | 7.9e-04 | 5.1 | 5.7 | 1.4e-08 | 0.90 | 0.51 | 0.48 | FALSE |
78 | Liver | Aptx | intron excision ratio | chr5:55811580:55813276 | 0.07 | 0.06 | top1 | 1 | 0.06 | 8.7e-07 | 5.6 | -5.6 | 2.4e-08 | -0.96 | 0.09 | 0.90 | FALSE |
79 | Liver | Aptx | intron excision ratio | chr5:55811580:55813754 | 0.54 | 0.45 | enet | 222 | 0.45 | 9.1e-56 | 5.1 | 5.3 | 1.1e-07 | 0.97 | 0.25 | 0.75 | FALSE |
80 | Liver | Aptx | intron excision ratio | chr5:55813542:55813754 | 0.08 | 0.06 | top1 | 1 | 0.06 | 3.4e-07 | 5.1 | -5.1 | 3.2e-07 | -0.96 | 0.47 | 0.40 | FALSE |
81 | Liver | Atp8b5p | intron excision ratio | chr5:57583252:57586245 | 0.03 | 0.02 | blup | 1578 | 0.02 | 2.3e-03 | 5.5 | -5.1 | 2.7e-07 | -0.93 | 0.27 | 0.55 | FALSE |
82 | Liver | Ddx58 | mRNA stability | ENSRNOG00000006384 | 0.04 | 0.01 | blup | 2296 | 0.01 | 1.2e-02 | 5.0 | 5.7 | 1.6e-08 | 0.92 | 0.55 | 0.41 | FALSE |
83 | Liver | Atp8b5p | mRNA stability | ENSRNOG00000021704 | 0.16 | 0.14 | lasso | 11 | 0.15 | 1.5e-16 | 5.3 | 5.3 | 1.5e-07 | 0.96 | 0.33 | 0.67 | FALSE |
84 | Liver | Vcp | mRNA stability | ENSRNOG00000034242 | 0.03 | 0.01 | enet | 3 | 0.02 | 1.1e-03 | 6.0 | -5.5 | 4.9e-08 | -0.91 | 0.27 | 0.45 | FALSE |
85 | NAcc | Aptx | isoform ratio | ENSRNOT00000094147 | 0.25 | 0.17 | top1 | 1 | 0.17 | 1.2e-04 | 5.1 | 5.1 | 2.9e-07 | 0.96 | 0.12 | 0.06 | FALSE |
86 | NAcc2 | Aptx | gene expression | ENSRNOG00000006582 | 0.35 | 0.25 | top1 | 1 | 0.25 | 5.1e-14 | 5.4 | 5.4 | 7.9e-08 | 0.96 | 0.23 | 0.76 | FALSE |
87 | NAcc2 | Gba2 | gene expression | ENSRNOG00000016364 | 0.12 | 0.09 | blup | 1803 | 0.09 | 1.3e-05 | 5.5 | -5.4 | 8.2e-08 | -0.96 | 0.30 | 0.70 | FALSE |
88 | NAcc2 | Ca9 | gene expression | ENSRNOG00000017073 | 0.09 | 0.06 | blup | 1641 | 0.06 | 2.8e-04 | 5.5 | -5.4 | 7.9e-08 | -0.96 | 0.31 | 0.67 | FALSE |
89 | NAcc2 | Atp8b5p | gene expression | ENSRNOG00000021704 | 0.15 | 0.10 | blup | 1579 | 0.11 | 1.7e-06 | 5.5 | 5.4 | 7.4e-08 | 0.96 | 0.44 | 0.56 | FALSE |
90 | NAcc2 | Vcp | gene expression | ENSRNOG00000034242 | 0.07 | 0.03 | top1 | 1 | 0.03 | 7.9e-03 | 5.7 | -5.7 | 1.4e-08 | -0.97 | 0.07 | 0.06 | FALSE |
91 | NAcc2 | Tmem215 | gene expression | ENSRNOG00000042246 | 0.06 | 0.03 | top1 | 1 | 0.03 | 1.0e-02 | 5.3 | 5.3 | 1.3e-07 | 0.93 | 0.09 | 0.05 | FALSE |
92 | NAcc2 | Aptx | isoform ratio | ENSRNOT00000046463 | 0.61 | 0.33 | top1 | 1 | 0.33 | 1.8e-18 | 5.4 | -5.4 | 7.6e-08 | -0.95 | 0.23 | 0.77 | FALSE |
93 | NAcc2 | Aptx | isoform ratio | ENSRNOT00000094147 | 0.73 | 0.55 | lasso | 11 | 0.56 | 9.1e-36 | 5.4 | 5.4 | 7.3e-08 | -0.97 | 0.20 | 0.80 | FALSE |
94 | NAcc2 | Unc13b | isoform ratio | ENSRNOT00000078274 | 0.08 | 0.07 | enet | 15 | 0.07 | 9.7e-05 | 5.6 | -5.5 | 2.9e-08 | -0.94 | 0.44 | 0.53 | FALSE |
95 | NAcc2 | Aptx | intron excision ratio | chr5:55811580:55813276 | 0.09 | 0.06 | top1 | 1 | 0.06 | 2.4e-04 | 5.6 | -5.6 | 2.2e-08 | -0.96 | 0.08 | 0.27 | FALSE |
96 | NAcc2 | Rusc2 | mRNA stability | ENSRNOG00000045843 | 0.05 | 0.01 | top1 | 1 | 0.01 | 6.7e-02 | 5.6 | -5.6 | 2.5e-08 | -0.95 | 0.06 | 0.04 | FALSE |
97 | OFC | Ddx58 | gene expression | ENSRNOG00000006384 | 0.44 | 0.34 | top1 | 1 | 0.34 | 6.6e-09 | 5.1 | -5.1 | 2.9e-07 | -0.91 | 0.40 | 0.18 | FALSE |
98 | OFC | Unc13b | isoform ratio | ENSRNOT00000078274 | 0.20 | 0.09 | top1 | 1 | 0.09 | 4.2e-03 | 5.6 | -5.6 | 2.0e-08 | -0.97 | 0.09 | 0.06 | FALSE |
99 | PL | Aptx | intron excision ratio | chr5:55811580:55813276 | 0.19 | 0.09 | blup | 2062 | 0.09 | 4.0e-03 | 5.1 | -5.1 | 2.8e-07 | -0.94 | 0.41 | 0.40 | FALSE |
100 | PL | Unc13b | mRNA stability | ENSRNOG00000008237 | 0.14 | 0.04 | lasso | 1 | 0.05 | 2.1e-02 | 5.5 | -5.5 | 3.0e-08 | -0.98 | 0.26 | 0.34 | FALSE |
101 | PL2 | Ddx58 | alternative TSS | ENSRNOT00000060765 | 0.10 | 0.07 | blup | 2296 | 0.08 | 3.9e-05 | -4.3 | -5.2 | 1.6e-07 | -0.85 | 0.86 | 0.14 | FALSE |
102 | PL2 | Ddx58 | alternative TSS | ENSRNOT00000107881 | 0.10 | 0.07 | blup | 2296 | 0.08 | 3.9e-05 | -4.3 | 5.3 | 1.5e-07 | 0.85 | 0.86 | 0.14 | FALSE |
103 | PL2 | Ccl27 | alternative TSS | ENSRNOT00000060594 | 0.16 | 0.08 | blup | 1359 | 0.09 | 1.6e-05 | 4.6 | -5.2 | 2.4e-07 | -0.92 | 0.62 | 0.38 | FALSE |
104 | PL2 | Ccl27 | alternative TSS | ENSRNOT00000098813 | 0.16 | 0.08 | blup | 1359 | 0.09 | 1.0e-05 | 4.6 | 5.2 | 2.3e-07 | 0.93 | 0.62 | 0.38 | FALSE |
105 | PL2 | Phf24 | gene expression | ENSRNOG00000000129 | 0.06 | 0.03 | lasso | 1 | 0.04 | 2.2e-03 | 5.6 | 5.6 | 2.0e-08 | 0.91 | 0.37 | 0.42 | FALSE |
106 | PL2 | Ubap1 | gene expression | ENSRNOG00000012004 | 0.07 | 0.03 | top1 | 1 | 0.03 | 1.1e-02 | 5.5 | 5.5 | 3.1e-08 | 0.99 | 0.05 | 0.04 | FALSE |
107 | PL2 | Tpm2 | gene expression | ENSRNOG00000016731 | 0.12 | 0.02 | blup | 1658 | 0.03 | 1.7e-02 | 4.6 | 5.1 | 3.2e-07 | 0.92 | 0.41 | 0.46 | FALSE |
108 | PL2 | Cd72 | gene expression | ENSRNOG00000017485 | 0.06 | 0.04 | top1 | 1 | 0.04 | 1.9e-03 | 5.7 | 5.7 | 1.4e-08 | 0.92 | 0.07 | 0.14 | FALSE |
109 | PL2 | Atp8b5p | gene expression | ENSRNOG00000021704 | 0.09 | 0.07 | blup | 1579 | 0.08 | 6.3e-05 | 4.4 | 5.1 | 2.9e-07 | 0.92 | 0.57 | 0.42 | FALSE |
110 | PL2 | Ccl21 | gene expression | ENSRNOG00000034290 | 0.21 | 0.15 | lasso | 12 | 0.17 | 1.6e-09 | 5.6 | -5.6 | 2.5e-08 | -0.97 | 0.42 | 0.58 | FALSE |
111 | PL2 | Tmem215 | gene expression | ENSRNOG00000042246 | 0.10 | 0.07 | top1 | 1 | 0.07 | 9.8e-05 | 5.6 | 5.6 | 2.4e-08 | 0.96 | 0.09 | 0.47 | FALSE |
112 | PL2 | NA | gene expression | ENSRNOG00000068351 | 0.13 | 0.08 | enet | 153 | 0.11 | 1.8e-06 | 5.5 | -5.1 | 2.7e-07 | -0.93 | 0.34 | 0.64 | FALSE |
113 | PL2 | Ddx58 | isoform ratio | ENSRNOT00000060765 | 0.05 | 0.01 | blup | 2296 | 0.02 | 1.9e-02 | -4.3 | -5.2 | 2.5e-07 | -0.83 | 0.66 | 0.15 | FALSE |
114 | PL2 | Aptx | isoform ratio | ENSRNOT00000046463 | 0.53 | 0.24 | top1 | 1 | 0.24 | 2.8e-13 | 5.4 | -5.4 | 7.9e-08 | -0.95 | 0.23 | 0.76 | FALSE |
115 | PL2 | Aptx | isoform ratio | ENSRNOT00000094147 | 0.69 | 0.48 | enet | 17 | 0.49 | 1.5e-29 | 5.4 | 5.5 | 4.9e-08 | 0.98 | 0.20 | 0.80 | FALSE |
116 | PL2 | Unc13b | isoform ratio | ENSRNOT00000067281 | 0.15 | 0.09 | blup | 1659 | 0.12 | 7.3e-07 | 5.6 | 5.5 | 3.7e-08 | 0.98 | 0.39 | 0.61 | FALSE |
117 | PL2 | Unc13b | isoform ratio | ENSRNOT00000078274 | 0.19 | 0.11 | lasso | 23 | 0.14 | 7.5e-08 | 5.6 | -5.6 | 2.2e-08 | -0.98 | 0.34 | 0.66 | FALSE |
118 | PL2 | Aptx | intron excision ratio | chr5:55811580:55813276 | 0.10 | 0.04 | lasso | 18 | 0.04 | 2.2e-03 | 5.1 | -5.1 | 3.1e-07 | -0.93 | 0.48 | 0.44 | FALSE |
119 | PL2 | Unc13b | intron excision ratio | chr5:57363638:57406741 | 0.09 | 0.06 | top1 | 1 | 0.06 | 4.4e-04 | 5.6 | 5.6 | 2.5e-08 | 0.98 | 0.08 | 0.07 | FALSE |
120 | PL2 | Unc13b | intron excision ratio | chr5:57403588:57406741 | 0.07 | 0.04 | top1 | 1 | 0.04 | 2.8e-03 | 5.6 | -5.6 | 2.5e-08 | -0.98 | 0.07 | 0.04 | FALSE |
121 | PL2 | Smu1 | mRNA stability | ENSRNOG00000007671 | 0.07 | 0.03 | top1 | 1 | 0.03 | 8.6e-03 | 5.6 | -5.6 | 2.2e-08 | -0.96 | 0.08 | 0.12 | FALSE |
122 | PL2 | Unc13b | mRNA stability | ENSRNOG00000008237 | 0.15 | 0.07 | blup | 1659 | 0.09 | 1.8e-05 | 5.8 | -5.5 | 3.7e-08 | -0.98 | 0.35 | 0.65 | FALSE |
h2: Heritability estimate for the given transcriptomic model. PP3: Posterior probability of two distinct causal variants. PP4: Posterior probability of a single shared causal variant. joint: Whether the RNA phenotype is in the joint model.