Best TWAS P = 4.10e-10 · Best GWAS P= 1.32e-08 conditioned to 1.00e+00
| Tissue | Gene | RNA modality | RNA phenotype | h2 | # weights | Model R2 | Model R2 P | TWAS Z | TWAS P | Coloc P | Joint |
|---|---|---|---|---|---|---|---|---|---|---|---|
| BLA | Pmfbp1 | intron excision ratio | chr19_54412111_54412440 | 0.07 | 18 | 0.04 | 3.9e-03 | 5.8 | 6.77e-09 | 0.66 | FALSE |
| Brain | Atxn1l | gene expression | Atxn1l | 0.07 | 43 | 0.03 | 4.6e-04 | 6.17 | 6.98e-10 | 0.51 | FALSE |
| Brain | Pmfbp1 | gene expression | Pmfbp1 | 0.2 | 45 | 0.17 | 2.6e-15 | -6.09 | 1.13e-09 | 0.7 | FALSE |
| Brain | Zfp821 | isoform ratio | XM_056985050.2 | 0.04 | 1 | 0.05 | 3.2e-05 | 5.3 | 1.19e-07 | 0.25 | FALSE |
| Brain | Ist1 | intron excision ratio | chr19_54561833_54564319 | 0.1 | 17 | 0.05 | 1.0e-05 | 5.52 | 3.48e-08 | 0.6 | TRUE |
| Brain | Zfp821 | intron excision ratio | chr19_54590998_54592473 | 0.06 | 1 | 0.07 | 7.0e-07 | 5.26 | 1.42e-07 | 0.47 | FALSE |
| NAcc | LOC134483641 | gene expression | LOC134483641 | 0.16 | 2495 | 0.22 | 2.8e-32 | 5.77 | 7.90e-09 | 0.8 | TRUE |
| NAcc | Ist1 | isoform ratio | NM_001017454.2 | 0.02 | 1 | 0.01 | 4.3e-03 | 5.26 | 1.45e-07 | 0.04 | FALSE |
| NAcc | Ist1 | isoform ratio | XM_063278049.1 | 0.02 | 1 | 0.02 | 1.0e-03 | -5.26 | 1.45e-07 | 0.07 | FALSE |
| NAcc | Ist1 | intron excision ratio | chr19_54561833_54564319 | 0.08 | 1 | 0.09 | 3.7e-13 | -5.41 | 6.36e-08 | 0.67 | TRUE |
| pVTA | Pmfbp1 | gene expression | Pmfbp1 | 0.11 | 19 | 0.08 | 5.8e-07 | 6.25 | 4.10e-10 | 0.68 | TRUE |