Best TWAS P = 7.57e-08 · Best GWAS P= 6.58e-08 conditioned to 1.00e+00
| Tissue | Gene | RNA modality | RNA phenotype | h2 | # weights | Model R2 | Model R2 P | TWAS Z | TWAS P | Coloc P | Joint |
|---|---|---|---|---|---|---|---|---|---|---|---|
| BLA | Fnip1 | gene expression | Fnip1 | 0.38 | 1 | 0.37 | 2.3e-20 | -5.23 | 1.72e-07 | 0.72 | FALSE |
| BLA | Pdlim4 | gene expression | Pdlim4 | 0.23 | 3 | 0.17 | 3.0e-09 | 5.22 | 1.75e-07 | 0.62 | TRUE |
| BLA | Fnip1 | intron excision ratio | chr10_39124152_39126423 | 0.06 | 1 | 0.03 | 1.2e-02 | -5.23 | 1.71e-07 | 0.05 | FALSE |
| BLA | Fnip1 | intron excision ratio | chr10_39124152_39126591 | 0.06 | 1 | 0.03 | 1.1e-02 | 5.23 | 1.71e-07 | 0.05 | FALSE |
| BLA | Tnip1 | mRNA stability | Tnip1 | 0.21 | 1 | 0.26 | 4.9e-14 | 5.33 | 9.92e-08 | 0.81 | FALSE |
| Brain | LOC120095102 | gene expression | LOC120095102 | 0.11 | 1 | 0.02 | 5.6e-03 | 5.21 | 1.92e-07 | 0.04 | FALSE |
| Brain | Cdc42se2 | mRNA stability | Cdc42se2 | 0.03 | 1 | 0.01 | 1.3e-02 | -5.38 | 7.57e-08 | 0.06 | TRUE |
| IC | Acsl6 | gene expression | Acsl6 | 0.18 | 1 | 0.17 | 8.3e-08 | -5.23 | 1.71e-07 | 0.7 | FALSE |
| IC | P4ha2 | intron excision ratio | chr10_38767889_38770202 | 0.06 | 1 | 0.08 | 2.7e-04 | -5.23 | 1.72e-07 | 0.06 | FALSE |
| IC | P4ha2 | intron excision ratio | chr10_38768003_38770202 | 0.06 | 1 | 0.08 | 2.7e-04 | 5.23 | 1.72e-07 | 0.06 | FALSE |
| IL | Acsl6 | gene expression | Acsl6 | 0.12 | 1 | 0.08 | 6.6e-03 | -5.38 | 7.57e-08 | 0.06 | FALSE |
| IL | Pdlim4 | gene expression | Pdlim4 | 0.16 | 16 | 0.12 | 8.0e-04 | -5.35 | 8.57e-08 | 0.41 | FALSE |
| IL | Slc36a1 | gene expression | Slc36a1 | 0.14 | 1 | 0.1 | 1.8e-03 | -5.21 | 1.92e-07 | 0.06 | FALSE |
| LHb | Gpx3 | gene expression | Gpx3 | 0.16 | 1 | 0.09 | 4.6e-03 | -5.23 | 1.72e-07 | 0.06 | FALSE |
| LHb | LOC100362400 | gene expression | LOC100362400 | 0.29 | 1 | 0.15 | 2.0e-04 | -5.38 | 7.57e-08 | 0.44 | TRUE |
| NAcc | P4ha2 | gene expression | P4ha2 | 0.02 | 1 | 0.02 | 2.1e-04 | 5.38 | 7.57e-08 | 0.41 | FALSE |
| NAcc | Tnip1 | gene expression | Tnip1 | 0.05 | 1 | 0.03 | 6.1e-06 | -5.38 | 7.57e-08 | 0.74 | FALSE |
| PL | Gm2a | gene expression | Gm2a | 0.12 | 8 | 0.1 | 4.7e-11 | -5.31 | 1.07e-07 | 0.54 | FALSE |
| PL | Anxa6 | intron excision ratio | chr10_39610758_39615252 | 0.11 | 1 | 0.15 | 3.3e-16 | 5.33 | 9.92e-08 | 0.81 | FALSE |