Best TWAS P=5.978144e-11 · Best GWAS P=9.691578e-09 conditioned to 1
# | Tissue | Gene | Modality | RNA phenotype | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | Adipose | Prr13 | alternative polyA | ENSRNOT00000090695 | 0.02 | 0.01 | top1 | 1 | 0.01 | 1.9e-02 | -5.1 | -5.1 | 3.1e-07 | 0.54 | 0.02 | 0.03 | FALSE |
2 | Adipose | Scn8a | gene expression | ENSRNOG00000005309 | 0.66 | 0.63 | top1 | 1 | 0.63 | 1.7e-89 | -5.6 | 5.6 | 1.9e-08 | -0.98 | 0.27 | 0.73 | TRUE |
3 | Adipose | Atg101 | gene expression | ENSRNOG00000007756 | 0.08 | 0.04 | blup | 1112 | 0.04 | 2.4e-05 | -5.5 | 5.7 | 1.1e-08 | -0.94 | 0.49 | 0.51 | FALSE |
4 | Adipose | Krt86 | gene expression | ENSRNOG00000008367 | 0.03 | 0.01 | blup | 1318 | 0.01 | 5.1e-02 | -5.5 | 5.6 | 2.5e-08 | -0.96 | 0.44 | 0.50 | FALSE |
5 | Adipose | Csad | gene expression | ENSRNOG00000011573 | 0.08 | 0.05 | top1 | 1 | 0.05 | 5.1e-06 | -5.2 | -5.2 | 1.8e-07 | 0.74 | 0.63 | 0.31 | FALSE |
6 | Adipose | Znf740 | gene expression | ENSRNOG00000012192 | 0.35 | 0.32 | top1 | 1 | 0.32 | 3.4e-36 | -5.3 | -5.3 | 1.0e-07 | 0.71 | 0.55 | 0.45 | FALSE |
7 | Adipose | Map3k12 | gene expression | ENSRNOG00000015134 | 0.14 | 0.11 | top1 | 1 | 0.11 | 8.2e-12 | -5.4 | -5.4 | 8.6e-08 | 0.38 | 0.28 | 0.72 | FALSE |
8 | Adipose | Atp5mc2 | gene expression | ENSRNOG00000015320 | 0.17 | 0.19 | enet | 46 | 0.20 | 8.7e-22 | -5.5 | 5.8 | 8.1e-09 | -0.44 | 0.11 | 0.89 | FALSE |
9 | Adipose | Slc11a2 | gene expression | ENSRNOG00000019550 | 0.41 | 0.16 | lasso | 56 | 0.22 | 4.7e-24 | -4.7 | -5.7 | 1.5e-08 | 0.78 | 0.48 | 0.51 | FALSE |
10 | Adipose | Krt80 | gene expression | ENSRNOG00000025994 | 0.11 | 0.02 | blup | 1100 | 0.03 | 1.2e-04 | -5.5 | 5.4 | 6.9e-08 | -0.89 | 0.49 | 0.50 | FALSE |
11 | Adipose | Slc4a8 | gene expression | ENSRNOG00000028879 | 0.09 | 0.10 | blup | 1377 | 0.10 | 1.1e-11 | -4.6 | 5.6 | 2.6e-08 | -0.96 | 0.82 | 0.18 | FALSE |
12 | Adipose | Prr13 | gene expression | ENSRNOG00000042094 | 0.10 | 0.11 | top1 | 1 | 0.11 | 1.4e-12 | -5.3 | -5.3 | 1.5e-07 | 0.51 | 0.40 | 0.60 | FALSE |
13 | Adipose | NA | gene expression | ENSRNOG00000065340 | 0.05 | 0.04 | top1 | 1 | 0.04 | 1.4e-05 | -5.5 | -5.5 | 3.8e-08 | 0.98 | 0.21 | 0.16 | FALSE |
14 | Adipose | Mettl7a | isoform ratio | ENSRNOT00000052075 | 0.04 | 0.01 | blup | 1594 | 0.03 | 3.1e-04 | -4.0 | 5.5 | 3.6e-08 | -0.77 | 0.53 | 0.41 | FALSE |
15 | Adipose | Scn8a | isoform ratio | ENSRNOT00000008160 | 0.06 | 0.02 | blup | 1327 | 0.04 | 2.3e-05 | -4.0 | 5.3 | 1.2e-07 | -0.97 | 0.33 | 0.66 | FALSE |
16 | Adipose | Csad | isoform ratio | ENSRNOT00000016205 | 0.09 | 0.03 | lasso | 5 | 0.04 | 1.9e-05 | -4.9 | 6.4 | 1.4e-10 | -0.90 | 0.49 | 0.50 | FALSE |
17 | Adipose | Atp5mc2 | isoform ratio | ENSRNOT00000020676 | 0.34 | 0.30 | top1 | 1 | 0.30 | 5.1e-34 | -5.4 | 5.4 | 6.4e-08 | -0.38 | 0.22 | 0.78 | FALSE |
18 | Adipose | Atp5mc2 | isoform ratio | ENSRNOT00000090051 | 0.35 | 0.30 | top1 | 1 | 0.30 | 4.7e-34 | -5.4 | -5.4 | 6.4e-08 | 0.38 | 0.22 | 0.78 | FALSE |
19 | Adipose | Slc11a2 | intron excision ratio | chr7:131527869:131538902 | 0.02 | 0.02 | blup | 1546 | 0.02 | 2.1e-03 | 4.9 | -5.2 | 1.6e-07 | 0.60 | 0.52 | 0.30 | FALSE |
20 | Adipose | Atp5mc2 | mRNA stability | ENSRNOG00000015320 | 0.35 | 0.35 | top1 | 1 | 0.35 | 9.6e-40 | -5.5 | 5.5 | 3.6e-08 | -0.38 | 0.14 | 0.86 | FALSE |
21 | BLA | Csad | alternative polyA | ENSRNOT00000016205 | 0.25 | 0.22 | lasso | 6 | 0.22 | 7.7e-12 | -5.0 | 5.3 | 1.2e-07 | -0.36 | 0.80 | 0.20 | FALSE |
22 | BLA | Csad | alternative TSS | ENSRNOT00000102299 | 0.15 | 0.10 | blup | 1122 | 0.12 | 4.4e-07 | -5.1 | -5.3 | 1.3e-07 | 0.52 | 0.63 | 0.37 | FALSE |
23 | BLA | Csad | gene expression | ENSRNOG00000011573 | 0.44 | 0.29 | top1 | 1 | 0.29 | 7.4e-16 | -5.5 | 5.5 | 4.5e-08 | -0.76 | 0.35 | 0.65 | FALSE |
24 | BLA | Map3k12 | gene expression | ENSRNOG00000015134 | 0.12 | 0.14 | blup | 452 | 0.17 | 1.8e-09 | -3.7 | -5.1 | 3.1e-07 | 0.38 | 0.28 | 0.72 | FALSE |
25 | BLA | Atp5mc2 | gene expression | ENSRNOG00000015320 | 0.70 | 0.61 | enet | 38 | 0.64 | 8.4e-44 | -5.6 | 5.1 | 2.7e-07 | -0.43 | 0.11 | 0.89 | FALSE |
26 | BLA | Krt1 | gene expression | ENSRNOG00000028996 | 0.23 | 0.27 | lasso | 15 | 0.28 | 4.3e-15 | -5.4 | 5.3 | 1.0e-07 | -0.93 | 0.55 | 0.45 | FALSE |
27 | BLA | Galnt6 | gene expression | ENSRNOG00000033059 | 0.42 | 0.37 | blup | 1453 | 0.46 | 8.1e-27 | -5.5 | 5.9 | 3.8e-09 | -0.91 | 0.27 | 0.73 | FALSE |
28 | BLA | Prr13 | gene expression | ENSRNOG00000042094 | 0.06 | 0.03 | blup | 516 | 0.05 | 8.6e-04 | -4.4 | -5.6 | 1.7e-08 | 0.59 | 0.40 | 0.47 | FALSE |
29 | BLA | NA | gene expression | ENSRNOG00000070769 | 0.28 | 0.15 | enet | 55 | 0.27 | 6.9e-15 | -5.0 | 5.5 | 3.1e-08 | -0.80 | 0.41 | 0.59 | FALSE |
30 | BLA | Csad | isoform ratio | ENSRNOT00000016205 | 0.05 | 0.03 | top1 | 1 | 0.03 | 1.0e-02 | -5.5 | 5.5 | 4.5e-08 | -0.76 | 0.06 | 0.06 | FALSE |
31 | BLA | Atp5mc2 | isoform ratio | ENSRNOT00000020676 | 0.38 | 0.44 | top1 | 1 | 0.44 | 4.9e-26 | -5.3 | 5.3 | 1.3e-07 | -0.37 | 0.35 | 0.65 | FALSE |
32 | BLA | Atp5mc2 | isoform ratio | ENSRNOT00000090051 | 0.37 | 0.44 | top1 | 1 | 0.44 | 9.0e-26 | -5.3 | -5.3 | 1.3e-07 | 0.37 | 0.35 | 0.65 | FALSE |
33 | BLA | Atg101 | intron excision ratio | chr7:132398752:132401420 | 0.06 | 0.04 | blup | 1112 | 0.04 | 4.0e-03 | -5.5 | -5.6 | 2.7e-08 | 0.98 | 0.50 | 0.42 | FALSE |
34 | BLA | Atg101 | intron excision ratio | chr7:132398752:132401715 | 0.08 | 0.07 | top1 | 1 | 0.07 | 1.5e-04 | -5.6 | 5.6 | 1.9e-08 | -0.98 | 0.11 | 0.12 | FALSE |
35 | BLA | Atg101 | intron excision ratio | chr7:132401594:132401715 | 0.07 | 0.02 | enet | 50 | 0.03 | 9.4e-03 | -5.6 | -5.1 | 2.8e-07 | -0.28 | 0.42 | 0.38 | FALSE |
36 | BLA | Map3k12 | intron excision ratio | chr7:133636613:133640099 | 0.04 | 0.05 | top1 | 1 | 0.05 | 8.9e-04 | -5.5 | -5.5 | 4.5e-08 | 0.38 | 0.03 | 0.07 | FALSE |
37 | BLA | Map3k12 | intron excision ratio | chr7:133640787:133647513 | 0.06 | 0.09 | top1 | 1 | 0.09 | 2.3e-05 | -5.5 | 5.5 | 4.5e-08 | -0.38 | 0.06 | 0.24 | FALSE |
38 | BLA | Scn8a | mRNA stability | ENSRNOG00000005309 | 0.05 | 0.02 | blup | 1331 | 0.05 | 8.9e-04 | 4.4 | 6.0 | 1.8e-09 | -0.85 | 0.44 | 0.37 | FALSE |
39 | BLA | Atp5mc2 | mRNA stability | ENSRNOG00000015320 | 0.69 | 0.59 | enet | 70 | 0.62 | 2.7e-41 | -5.6 | 5.3 | 1.2e-07 | -0.41 | 0.11 | 0.89 | FALSE |
40 | BLA | Dip2b | mRNA stability | ENSRNOG00000056106 | 0.15 | 0.10 | enet | 16 | 0.12 | 4.9e-07 | 4.4 | 5.3 | 1.2e-07 | -0.59 | 0.56 | 0.43 | FALSE |
41 | Brain | Prr13 | alternative polyA | ENSRNOT00000090695 | 0.03 | 0.02 | blup | 516 | 0.02 | 2.3e-03 | -5.3 | 5.4 | 5.6e-08 | -0.36 | 0.23 | 0.65 | FALSE |
42 | Brain | Prr13 | alternative polyA | ENSRNOT00000113574 | 0.03 | 0.03 | blup | 516 | 0.03 | 7.8e-04 | -5.3 | -5.4 | 6.5e-08 | 0.36 | 0.27 | 0.67 | FALSE |
43 | Brain | Csad | alternative TSS | ENSRNOT00000079678 | 0.18 | 0.12 | lasso | 14 | 0.13 | 1.1e-11 | -5.0 | 5.2 | 2.5e-07 | -0.24 | 0.81 | 0.19 | FALSE |
44 | Brain | Csad | alternative TSS | ENSRNOT00000102299 | 0.54 | 0.42 | enet | 126 | 0.42 | 7.3e-42 | -5.1 | -5.1 | 2.7e-07 | 0.33 | 0.82 | 0.18 | FALSE |
45 | Brain | Csad | alternative TSS | ENSRNOT00000079678 | 0.17 | 0.12 | lasso | 11 | 0.12 | 2.1e-11 | -5.0 | 5.3 | 1.2e-07 | -0.29 | 0.81 | 0.19 | FALSE |
46 | Brain | Dazap2 | gene expression | ENSRNOG00000004628 | 0.05 | 0.02 | lasso | 2 | 0.03 | 1.8e-03 | -4.4 | 5.3 | 9.5e-08 | 0.86 | 0.39 | 0.44 | TRUE |
47 | Brain | Atg101 | gene expression | ENSRNOG00000007756 | 0.06 | 0.05 | top1 | 1 | 0.05 | 1.0e-05 | -5.6 | 5.6 | 1.8e-08 | -0.98 | 0.25 | 0.32 | FALSE |
48 | Brain | Igfbp6 | gene expression | ENSRNOG00000010977 | 0.60 | 0.45 | lasso | 40 | 0.48 | 2.3e-49 | -5.1 | 5.1 | 3.2e-07 | -0.43 | 0.75 | 0.25 | FALSE |
49 | Brain | Csad | gene expression | ENSRNOG00000011573 | 0.70 | 0.68 | lasso | 58 | 0.69 | 1.7e-87 | -5.1 | 5.2 | 2.0e-07 | -0.33 | 0.81 | 0.19 | FALSE |
50 | Brain | Itgb7 | gene expression | ENSRNOG00000012208 | 0.16 | 0.15 | lasso | 17 | 0.17 | 3.0e-15 | -5.1 | -5.4 | 5.8e-08 | 0.35 | 0.76 | 0.24 | FALSE |
51 | Brain | Map3k12 | gene expression | ENSRNOG00000015134 | 0.25 | 0.23 | top1 | 1 | 0.23 | 1.9e-21 | -5.1 | -5.1 | 3.1e-07 | 0.39 | 0.57 | 0.43 | FALSE |
52 | Brain | Atp5mc2 | gene expression | ENSRNOG00000015320 | 0.67 | 0.71 | enet | 70 | 0.71 | 4.9e-93 | -5.5 | 5.6 | 2.2e-08 | -0.46 | 0.11 | 0.89 | FALSE |
53 | Brain | Slc11a2 | gene expression | ENSRNOG00000019550 | 0.07 | 0.04 | blup | 1550 | 0.06 | 2.4e-06 | 4.6 | -5.5 | 3.4e-08 | 0.69 | 0.50 | 0.50 | FALSE |
54 | Brain | Krt1 | gene expression | ENSRNOG00000028996 | 0.12 | 0.13 | top1 | 1 | 0.13 | 5.1e-12 | -5.4 | 5.4 | 7.3e-08 | -0.91 | 0.62 | 0.38 | FALSE |
55 | Brain | Galnt6 | gene expression | ENSRNOG00000033059 | 0.47 | 0.44 | enet | 73 | 0.62 | 3.8e-73 | -5.3 | 6.1 | 1.4e-09 | -0.85 | 0.30 | 0.70 | FALSE |
56 | Brain | Prr13 | gene expression | ENSRNOG00000042094 | 0.03 | 0.02 | blup | 516 | 0.02 | 2.5e-03 | -5.5 | -5.5 | 3.4e-08 | 0.44 | 0.17 | 0.75 | FALSE |
57 | Brain | NA | gene expression | ENSRNOG00000065340 | 0.07 | 0.06 | blup | 987 | 0.08 | 6.2e-08 | -4.6 | -5.5 | 4.6e-08 | 0.99 | 0.51 | 0.49 | FALSE |
58 | Brain | Csad | isoform ratio | ENSRNOT00000079678 | 0.30 | 0.20 | lasso | 5 | 0.21 | 8.5e-19 | -4.9 | -5.3 | 1.0e-07 | 0.37 | 0.82 | 0.18 | FALSE |
59 | Brain | Csad | isoform ratio | ENSRNOT00000110884 | 0.12 | 0.05 | enet | 7 | 0.09 | 1.4e-08 | -5.1 | 5.5 | 4.2e-08 | -0.45 | 0.32 | 0.68 | FALSE |
60 | Brain | Prr13 | isoform ratio | ENSRNOT00000090695 | 0.03 | 0.02 | blup | 516 | 0.03 | 4.5e-04 | -5.3 | 5.5 | 4.1e-08 | -0.42 | 0.28 | 0.70 | FALSE |
61 | Brain | Dazap2 | intron excision ratio | chr7:131716432:131717118 | 0.05 | 0.02 | blup | 1583 | 0.04 | 6.2e-05 | -5.6 | 5.7 | 9.4e-09 | -0.87 | 0.37 | 0.62 | FALSE |
62 | Brain | Dazap2 | intron excision ratio | chr7:131717363:131718880 | 0.04 | 0.01 | blup | 1583 | 0.03 | 1.2e-03 | -5.6 | -5.8 | 8.3e-09 | 0.85 | 0.40 | 0.55 | FALSE |
63 | Brain | Atg101 | intron excision ratio | chr7:132398752:132401420 | 0.04 | 0.03 | blup | 1112 | 0.05 | 2.8e-05 | -5.7 | -5.6 | 2.8e-08 | 0.98 | 0.51 | 0.49 | FALSE |
64 | Brain | Csad | intron excision ratio | chr7:133311292:133311516 | 0.08 | 0.03 | lasso | 3 | 0.03 | 6.0e-04 | -5.1 | -5.5 | 4.3e-08 | 0.42 | 0.37 | 0.62 | FALSE |
65 | Brain | Map3k12 | intron excision ratio | chr7:133636613:133640099 | 0.04 | 0.03 | top1 | 1 | 0.03 | 1.2e-03 | -5.4 | -5.4 | 6.4e-08 | 0.39 | 0.02 | 0.06 | FALSE |
66 | Brain | Igfbp6 | mRNA stability | ENSRNOG00000010977 | 0.03 | 0.02 | blup | 1027 | 0.02 | 3.6e-03 | -5.2 | 5.9 | 4.8e-09 | -0.80 | 0.44 | 0.41 | FALSE |
67 | Brain | Rarg | mRNA stability | ENSRNOG00000012499 | 0.05 | 0.03 | blup | 930 | 0.03 | 1.1e-03 | -5.1 | 5.6 | 2.5e-08 | -0.61 | 0.61 | 0.29 | FALSE |
68 | Brain | Atp5mc2 | mRNA stability | ENSRNOG00000015320 | 0.45 | 0.55 | lasso | 7 | 0.55 | 1.1e-60 | -5.5 | 5.5 | 3.3e-08 | -0.46 | 0.11 | 0.89 | FALSE |
69 | Brain | Tfcp2 | mRNA stability | ENSRNOG00000032395 | 0.11 | 0.11 | top1 | 1 | 0.11 | 4.6e-10 | -5.3 | -5.3 | 1.2e-07 | 0.87 | 0.46 | 0.54 | FALSE |
70 | Brain | NA | mRNA stability | ENSRNOG00000070769 | 0.13 | 0.04 | top1 | 1 | 0.04 | 6.4e-05 | -5.6 | -5.6 | 1.9e-08 | 0.93 | 0.10 | 0.53 | FALSE |
71 | Eye | Slc11a2 | alternative TSS | ENSRNOT00000093762 | 0.39 | 0.15 | blup | 1550 | 0.17 | 1.2e-03 | 4.5 | -5.2 | 2.3e-07 | 0.62 | 0.60 | 0.20 | FALSE |
72 | Eye | NA | gene expression | ENSRNOG00000008057 | 0.84 | 0.05 | blup | 1127 | 0.06 | 4.5e-02 | -5.7 | 5.2 | 2.0e-07 | -0.83 | 0.21 | 0.24 | FALSE |
73 | Eye | Spryd3 | gene expression | ENSRNOG00000010793 | 0.42 | 0.26 | lasso | 15 | 0.31 | 1.0e-05 | -5.2 | -5.5 | 4.3e-08 | 0.44 | 0.36 | 0.19 | FALSE |
74 | Eye | Atp5mc2 | gene expression | ENSRNOG00000015320 | 0.90 | 0.46 | top1 | 1 | 0.46 | 1.6e-08 | -5.2 | 5.2 | 1.8e-07 | -0.35 | 0.09 | 0.14 | FALSE |
75 | Eye | Krt4 | gene expression | ENSRNOG00000032332 | 0.32 | 0.05 | blup | 1107 | 0.12 | 6.6e-03 | -4.8 | -5.6 | 2.4e-08 | 0.77 | 0.24 | 0.18 | FALSE |
76 | Eye | Pcbp2 | gene expression | ENSRNOG00000036852 | 0.78 | 0.28 | top1 | 1 | 0.28 | 3.0e-05 | -5.2 | -5.2 | 1.8e-07 | 0.40 | 0.03 | 0.07 | FALSE |
77 | Eye | Krt6a | gene expression | ENSRNOG00000068586 | 0.66 | 0.20 | lasso | 24 | 0.22 | 2.8e-04 | -5.5 | 5.8 | 5.1e-09 | -0.91 | 0.45 | 0.39 | FALSE |
78 | Eye | NA | gene expression | ENSRNOG00000068784 | 0.45 | 0.04 | blup | 1332 | 0.11 | 8.5e-03 | -5.5 | 5.9 | 2.8e-09 | -0.83 | 0.39 | 0.28 | FALSE |
79 | Eye | Krt6a | gene expression | ENSRNOG00000070470 | 0.81 | 0.28 | enet | 92 | 0.28 | 3.0e-05 | -5.5 | -5.5 | 3.7e-08 | 0.94 | 0.47 | 0.45 | FALSE |
80 | IL | Prr13 | alternative polyA | ENSRNOT00000090695 | 0.13 | 0.04 | blup | 515 | 0.05 | 3.0e-02 | -4.4 | 5.2 | 1.6e-07 | -0.32 | 0.21 | 0.28 | FALSE |
81 | IL | Prr13 | alternative polyA | ENSRNOT00000113574 | 0.16 | 0.04 | blup | 515 | 0.07 | 9.5e-03 | -4.9 | -5.3 | 1.3e-07 | 0.33 | 0.26 | 0.33 | FALSE |
82 | IL | Prr13 | alternative polyA | ENSRNOT00000090695 | 0.13 | 0.04 | blup | 515 | 0.05 | 2.7e-02 | -5.1 | 5.5 | 4.0e-08 | -0.41 | 0.18 | 0.36 | FALSE |
83 | IL | Prr13 | alternative polyA | ENSRNOT00000113574 | 0.16 | 0.07 | lasso | 8 | 0.08 | 5.4e-03 | -4.9 | -5.6 | 2.5e-08 | 0.37 | 0.23 | 0.41 | FALSE |
84 | IL | Tns2 | gene expression | ENSRNOG00000010588 | 0.31 | 0.11 | blup | 1040 | 0.12 | 6.7e-04 | -4.4 | -5.2 | 1.8e-07 | 0.27 | 0.52 | 0.12 | TRUE |
85 | IL | Krt1 | gene expression | ENSRNOG00000028996 | 0.13 | 0.10 | top1 | 1 | 0.10 | 2.4e-03 | -5.5 | 5.5 | 4.7e-08 | -0.91 | 0.07 | 0.06 | FALSE |
86 | IL | Krt77 | gene expression | ENSRNOG00000036865 | 0.19 | 0.04 | blup | 1261 | 0.06 | 1.7e-02 | -4.5 | -5.5 | 4.4e-08 | 0.78 | 0.33 | 0.17 | FALSE |
87 | IL | NA | gene expression | ENSRNOG00000070769 | 0.47 | 0.21 | blup | 1606 | 0.28 | 2.2e-07 | 5.0 | 6.0 | 1.6e-09 | -0.85 | 0.61 | 0.35 | FALSE |
88 | IL | Atp5mc2 | isoform ratio | ENSRNOT00000020676 | 0.34 | 0.21 | top1 | 1 | 0.21 | 1.1e-05 | -5.6 | 5.6 | 2.2e-08 | -0.43 | 0.04 | 0.26 | FALSE |
89 | IL | Atp5mc2 | isoform ratio | ENSRNOT00000090051 | 0.35 | 0.21 | top1 | 1 | 0.21 | 7.5e-06 | -5.6 | -5.6 | 2.2e-08 | 0.43 | 0.04 | 0.27 | FALSE |
90 | IL | Map3k12 | intron excision ratio | chr7:133640787:133647513 | 0.41 | 0.12 | top1 | 1 | 0.12 | 9.1e-04 | -5.6 | 5.6 | 2.2e-08 | -0.43 | 0.03 | 0.07 | FALSE |
91 | LHb | Galnt6 | gene expression | ENSRNOG00000033059 | 0.68 | 0.14 | enet | 9 | 0.31 | 4.3e-08 | -4.9 | 5.9 | 3.0e-09 | -0.82 | 0.44 | 0.55 | FALSE |
92 | LHb | Krt77 | gene expression | ENSRNOG00000036865 | 0.16 | 0.06 | enet | 5 | 0.09 | 3.4e-03 | -4.5 | -5.2 | 1.7e-07 | 0.83 | 0.48 | 0.32 | FALSE |
93 | LHb | NA | gene expression | ENSRNOG00000065340 | 0.22 | 0.22 | top1 | 1 | 0.22 | 7.4e-06 | -5.5 | -5.5 | 2.9e-08 | 0.98 | 0.07 | 0.07 | FALSE |
94 | LHb | Atp5mc2 | isoform ratio | ENSRNOT00000020676 | 0.55 | 0.29 | lasso | 30 | 0.29 | 1.2e-07 | -5.2 | 5.2 | 1.5e-07 | -0.46 | 0.12 | 0.88 | FALSE |
95 | LHb | Atp5mc2 | isoform ratio | ENSRNOT00000090051 | 0.51 | 0.27 | lasso | 20 | 0.29 | 1.7e-07 | -5.2 | -5.2 | 1.6e-07 | 0.46 | 0.12 | 0.88 | FALSE |
96 | LHb | Slc11a2 | isoform ratio | ENSRNOT00000026531 | 0.17 | 0.08 | enet | 7 | 0.09 | 4.8e-03 | 4.1 | 5.1 | 3.0e-07 | -0.52 | 0.50 | 0.29 | FALSE |
97 | LHb | Atp5mc2 | mRNA stability | ENSRNOG00000015320 | 0.40 | 0.26 | top1 | 1 | 0.26 | 5.4e-07 | -5.6 | 5.6 | 2.1e-08 | -0.39 | 0.06 | 0.49 | FALSE |
98 | Liver | Atg101 | gene expression | ENSRNOG00000007756 | 0.02 | 0.01 | blup | 1112 | 0.01 | 2.2e-02 | -5.5 | 5.6 | 2.8e-08 | -0.98 | 0.36 | 0.34 | FALSE |
99 | Liver | Csad | gene expression | ENSRNOG00000011573 | 0.04 | 0.03 | top1 | 1 | 0.03 | 4.0e-04 | -5.4 | -5.4 | 5.5e-08 | 0.78 | 0.12 | 0.16 | FALSE |
100 | Liver | Znf740 | gene expression | ENSRNOG00000012192 | 0.04 | 0.01 | top1 | 1 | 0.01 | 1.3e-02 | -5.2 | -5.2 | 1.8e-07 | 0.68 | 0.04 | 0.04 | FALSE |
101 | Liver | Atp5mc2 | gene expression | ENSRNOG00000015320 | 0.38 | 0.29 | lasso | 30 | 0.30 | 4.3e-33 | -5.5 | 5.4 | 5.4e-08 | -0.46 | 0.11 | 0.89 | FALSE |
102 | Liver | Prr13 | gene expression | ENSRNOG00000042094 | 0.06 | 0.07 | top1 | 1 | 0.07 | 5.1e-08 | -5.2 | -5.2 | 1.8e-07 | 0.51 | 0.44 | 0.56 | FALSE |
103 | Liver | Krt71 | gene expression | ENSRNOG00000049495 | 0.23 | 0.10 | enet | 26 | 0.11 | 6.6e-12 | -5.5 | -6.5 | 6.0e-11 | 0.82 | 0.41 | 0.59 | TRUE |
104 | Liver | Soat2 | gene expression | ENSRNOG00000053769 | 0.39 | 0.33 | lasso | 24 | 0.35 | 6.9e-41 | -5.0 | -5.6 | 1.8e-08 | 0.51 | 0.77 | 0.23 | FALSE |
105 | Liver | NA | gene expression | ENSRNOG00000070294 | 0.06 | 0.06 | top1 | 1 | 0.06 | 5.9e-07 | -5.3 | -5.3 | 1.4e-07 | 0.99 | 0.71 | 0.17 | FALSE |
106 | Liver | Atp5mc2 | isoform ratio | ENSRNOT00000020676 | 0.71 | 0.73 | enet | 93 | 0.73 | 1.4e-117 | -5.6 | 5.6 | 1.8e-08 | -0.46 | 0.11 | 0.89 | FALSE |
107 | Liver | Atp5mc2 | isoform ratio | ENSRNOT00000090051 | 0.71 | 0.73 | enet | 89 | 0.73 | 3.3e-119 | -5.6 | -5.6 | 1.8e-08 | 0.46 | 0.11 | 0.89 | FALSE |
108 | Liver | Pcbp2 | isoform ratio | ENSRNOT00000105769 | 0.14 | 0.12 | top1 | 1 | 0.12 | 7.1e-13 | -5.3 | 5.3 | 1.1e-07 | -0.40 | 0.33 | 0.67 | FALSE |
109 | Liver | Prr13 | isoform ratio | ENSRNOT00000090695 | 0.06 | 0.07 | blup | 516 | 0.08 | 3.4e-09 | -5.0 | 5.8 | 8.2e-09 | -0.57 | 0.12 | 0.88 | FALSE |
110 | Liver | Prr13 | isoform ratio | ENSRNOT00000113574 | 0.05 | 0.03 | enet | 5 | 0.04 | 2.9e-05 | -5.4 | -5.4 | 7.5e-08 | 0.79 | 0.16 | 0.83 | FALSE |
111 | Liver | Atg101 | intron excision ratio | chr7:132398752:132401420 | 0.02 | 0.01 | blup | 1112 | 0.02 | 4.9e-03 | -5.3 | -5.4 | 5.6e-08 | 0.99 | 0.41 | 0.28 | FALSE |
112 | Liver | Atg101 | intron excision ratio | chr7:132398752:132401715 | 0.03 | 0.02 | enet | 17 | 0.03 | 6.5e-04 | -5.6 | 5.6 | 2.3e-08 | -0.94 | 0.51 | 0.45 | FALSE |
113 | Liver | Atf1 | intron excision ratio | chr7:131392102:131396775 | 0.07 | 0.08 | enet | 4 | 0.09 | 4.4e-10 | 5.0 | -5.3 | 1.3e-07 | 0.66 | 0.62 | 0.38 | FALSE |
114 | Liver | Atg101 | mRNA stability | ENSRNOG00000007756 | 0.04 | 0.05 | top1 | 1 | 0.05 | 3.2e-06 | -5.4 | -5.4 | 6.1e-08 | 0.98 | 0.38 | 0.16 | FALSE |
115 | Liver | Znf740 | mRNA stability | ENSRNOG00000012192 | 0.04 | 0.03 | top1 | 1 | 0.03 | 4.0e-04 | -5.2 | -5.2 | 1.8e-07 | 0.61 | 0.06 | 0.04 | FALSE |
116 | Liver | Atp5mc2 | mRNA stability | ENSRNOG00000015320 | 0.26 | 0.28 | enet | 27 | 0.28 | 1.2e-31 | -5.4 | 5.5 | 4.1e-08 | -0.47 | 0.12 | 0.88 | FALSE |
117 | Liver | Soat2 | mRNA stability | ENSRNOG00000053769 | 0.08 | 0.03 | enet | 19 | 0.04 | 1.7e-05 | -5.1 | -5.4 | 5.3e-08 | 0.39 | 0.75 | 0.24 | FALSE |
118 | NAcc | Krt1 | gene expression | ENSRNOG00000028996 | 0.42 | 0.20 | lasso | 3 | 0.20 | 3.0e-05 | -5.2 | 5.2 | 1.6e-07 | -0.91 | 0.38 | 0.52 | TRUE |
119 | NAcc | Galnt6 | gene expression | ENSRNOG00000033059 | 0.30 | 0.02 | blup | 1448 | 0.03 | 6.1e-02 | 4.9 | 5.7 | 1.4e-08 | -0.69 | 0.36 | 0.11 | FALSE |
120 | NAcc | Krt71 | gene expression | ENSRNOG00000049495 | 0.23 | 0.07 | blup | 1432 | 0.07 | 1.0e-02 | -5.4 | 5.3 | 1.4e-07 | -0.92 | 0.34 | 0.34 | FALSE |
121 | NAcc | NA | gene expression | ENSRNOG00000070769 | 0.79 | 0.19 | enet | 11 | 0.25 | 2.3e-06 | -4.9 | 5.6 | 2.3e-08 | -0.76 | 0.73 | 0.18 | TRUE |
122 | NAcc | Atp5mc2 | isoform ratio | ENSRNOT00000020676 | 0.34 | 0.02 | blup | 489 | 0.05 | 3.5e-02 | -5.4 | 5.5 | 2.9e-08 | -0.45 | 0.10 | 0.41 | FALSE |
123 | NAcc | Atp5mc2 | isoform ratio | ENSRNOT00000090051 | 0.32 | 0.03 | blup | 489 | 0.04 | 5.3e-02 | -5.4 | -5.5 | 2.9e-08 | 0.45 | 0.10 | 0.39 | FALSE |
124 | NAcc | Slc11a2 | intron excision ratio | chr7:131513908:131515584 | 0.22 | 0.00 | blup | 1544 | 0.01 | 1.7e-01 | 4.5 | -5.5 | 3.3e-08 | 0.75 | 0.26 | 0.17 | FALSE |
125 | NAcc | Scn8a | mRNA stability | ENSRNOG00000005309 | 0.43 | 0.03 | enet | 6 | 0.07 | 1.1e-02 | -5.6 | 6.1 | 7.8e-10 | -0.85 | 0.23 | 0.50 | FALSE |
126 | NAcc | Atp5mc2 | mRNA stability | ENSRNOG00000015320 | 0.59 | 0.23 | top1 | 1 | 0.23 | 6.8e-06 | -5.4 | 5.4 | 6.4e-08 | -0.39 | 0.04 | 0.12 | FALSE |
127 | NAcc2 | Csad | alternative TSS | ENSRNOT00000102299 | 0.16 | 0.09 | lasso | 14 | 0.10 | 3.6e-06 | -4.9 | -5.6 | 1.7e-08 | 0.47 | 0.80 | 0.20 | FALSE |
128 | NAcc2 | Csad | alternative TSS | ENSRNOT00000102299 | 0.19 | 0.15 | lasso | 18 | 0.16 | 6.0e-09 | -5.1 | -5.3 | 1.1e-07 | 0.38 | 0.81 | 0.18 | TRUE |
129 | NAcc2 | Csad | gene expression | ENSRNOG00000011573 | 0.26 | 0.35 | top1 | 1 | 0.35 | 1.0e-19 | -5.3 | 5.3 | 1.0e-07 | -0.76 | 0.55 | 0.45 | FALSE |
130 | NAcc2 | Map3k12 | gene expression | ENSRNOG00000015134 | 0.16 | 0.10 | top1 | 1 | 0.10 | 4.4e-06 | -5.4 | -5.4 | 8.6e-08 | 0.39 | 0.18 | 0.45 | FALSE |
131 | NAcc2 | Atp5mc2 | gene expression | ENSRNOG00000015320 | 0.29 | 0.21 | top1 | 1 | 0.21 | 1.5e-11 | -5.7 | 5.7 | 1.5e-08 | -0.38 | 0.06 | 0.94 | FALSE |
132 | NAcc2 | Galnt6 | gene expression | ENSRNOG00000033059 | 0.43 | 0.32 | enet | 65 | 0.49 | 9.7e-30 | -5.5 | 5.9 | 4.5e-09 | -0.69 | 0.35 | 0.65 | FALSE |
133 | NAcc2 | Krt71 | gene expression | ENSRNOG00000049495 | 0.14 | 0.14 | blup | 1440 | 0.18 | 4.7e-10 | -5.4 | 5.7 | 1.0e-08 | -0.92 | 0.40 | 0.60 | FALSE |
134 | NAcc2 | NA | gene expression | ENSRNOG00000065340 | 0.11 | 0.07 | top1 | 1 | 0.07 | 1.1e-04 | -5.7 | -5.7 | 1.2e-08 | 0.98 | 0.07 | 0.12 | FALSE |
135 | NAcc2 | NA | gene expression | ENSRNOG00000068784 | 0.04 | 0.02 | blup | 1385 | 0.04 | 4.7e-03 | -5.4 | 5.5 | 3.4e-08 | -0.91 | 0.47 | 0.40 | FALSE |
136 | NAcc2 | NA | gene expression | ENSRNOG00000070769 | 0.25 | 0.20 | blup | 1611 | 0.26 | 2.9e-14 | -4.1 | 5.6 | 2.6e-08 | -0.90 | 0.66 | 0.34 | FALSE |
137 | NAcc2 | Atp5mc2 | isoform ratio | ENSRNOT00000020676 | 0.52 | 0.46 | top1 | 1 | 0.46 | 2.5e-27 | -5.4 | 5.4 | 8.6e-08 | -0.37 | 0.27 | 0.73 | FALSE |
138 | NAcc2 | Atp5mc2 | isoform ratio | ENSRNOT00000090051 | 0.51 | 0.45 | top1 | 1 | 0.45 | 7.2e-27 | -5.4 | -5.4 | 8.6e-08 | 0.37 | 0.27 | 0.73 | FALSE |
139 | NAcc2 | Map3k12 | intron excision ratio | chr7:133636613:133640099 | 0.07 | 0.06 | top1 | 1 | 0.06 | 3.5e-04 | -5.3 | -5.3 | 1.3e-07 | 0.39 | 0.03 | 0.05 | FALSE |
140 | NAcc2 | Map3k12 | intron excision ratio | chr7:133640787:133647513 | 0.09 | 0.08 | top1 | 1 | 0.08 | 3.5e-05 | -5.2 | 5.2 | 1.8e-07 | -0.39 | 0.06 | 0.09 | FALSE |
141 | NAcc2 | Slc11a2 | intron excision ratio | chr7:131527869:131538125 | 0.09 | 0.06 | lasso | 9 | 0.06 | 2.2e-04 | -4.8 | 5.5 | 5.0e-08 | -0.79 | 0.56 | 0.43 | FALSE |
142 | NAcc2 | Atp5mc2 | mRNA stability | ENSRNOG00000015320 | 0.76 | 0.36 | enet | 50 | 0.36 | 1.7e-20 | -5.5 | 5.2 | 1.7e-07 | -0.47 | 0.12 | 0.88 | FALSE |
143 | NAcc2 | Krt71 | mRNA stability | ENSRNOG00000049495 | 0.04 | 0.00 | blup | 1440 | 0.01 | 5.1e-02 | -5.6 | 5.8 | 5.3e-09 | -0.90 | 0.43 | 0.32 | FALSE |
144 | NAcc2 | Atf1 | mRNA stability | ENSRNOG00000061088 | 0.13 | 0.07 | enet | 75 | 0.10 | 3.9e-06 | -4.1 | 5.2 | 2.0e-07 | -0.71 | 0.50 | 0.50 | FALSE |
145 | OFC | Galnt6 | gene expression | ENSRNOG00000033059 | 0.29 | 0.11 | enet | 13 | 0.16 | 1.2e-04 | 4.8 | 5.6 | 2.4e-08 | -0.67 | 0.62 | 0.15 | FALSE |
146 | OFC | Atp5mc2 | isoform ratio | ENSRNOT00000020676 | 0.38 | 0.01 | blup | 489 | 0.10 | 1.9e-03 | -5.4 | 5.6 | 1.8e-08 | -0.44 | 0.11 | 0.55 | FALSE |
147 | OFC | Atp5mc2 | isoform ratio | ENSRNOT00000090051 | 0.37 | 0.06 | blup | 489 | 0.11 | 1.4e-03 | -5.6 | -5.6 | 2.4e-08 | 0.44 | 0.11 | 0.57 | FALSE |
148 | OFC | Atg101 | intron excision ratio | chr7:132398752:132401420 | 0.12 | 0.08 | top1 | 1 | 0.08 | 6.5e-03 | -5.5 | -5.5 | 4.4e-08 | 0.98 | 0.06 | 0.05 | FALSE |
149 | OFC | Atg101 | intron excision ratio | chr7:132398752:132401715 | 0.26 | 0.18 | top1 | 1 | 0.18 | 5.9e-05 | -5.5 | 5.5 | 4.4e-08 | -0.98 | 0.07 | 0.06 | FALSE |
150 | OFC | Map3k12 | intron excision ratio | chr7:133636613:133640099 | 0.29 | 0.08 | lasso | 17 | 0.12 | 1.0e-03 | -5.2 | -5.2 | 2.4e-07 | 0.45 | 0.10 | 0.60 | FALSE |
151 | PL | Atp5mc2 | gene expression | ENSRNOG00000015320 | 0.29 | 0.12 | lasso | 11 | 0.14 | 3.5e-04 | -5.2 | 5.4 | 6.5e-08 | -0.46 | 0.11 | 0.77 | FALSE |
152 | PL | NA | gene expression | ENSRNOG00000070769 | 0.53 | 0.08 | blup | 1606 | 0.27 | 3.4e-07 | 5.0 | 5.7 | 9.4e-09 | -0.75 | 0.84 | 0.14 | FALSE |
153 | PL | Atp5mc2 | isoform ratio | ENSRNOT00000020676 | 0.34 | 0.16 | enet | 157 | 0.18 | 4.2e-05 | -5.2 | 5.5 | 3.1e-08 | -0.47 | 0.12 | 0.85 | FALSE |
154 | PL | Atp5mc2 | isoform ratio | ENSRNOT00000090051 | 0.34 | 0.21 | top1 | 1 | 0.21 | 1.1e-05 | -5.4 | -5.4 | 6.4e-08 | 0.40 | 0.05 | 0.16 | FALSE |
155 | PL | Atp5mc2 | mRNA stability | ENSRNOG00000015320 | 0.47 | 0.28 | top1 | 1 | 0.28 | 1.7e-07 | -5.4 | 5.4 | 6.4e-08 | -0.40 | 0.09 | 0.32 | FALSE |
156 | PL2 | Csad | alternative polyA | ENSRNOT00000016205 | 0.25 | 0.16 | lasso | 5 | 0.18 | 6.4e-10 | -5.0 | 6.3 | 2.8e-10 | -0.81 | 0.78 | 0.22 | FALSE |
157 | PL2 | Csad | alternative polyA | ENSRNOT00000079678 | 0.27 | 0.18 | lasso | 9 | 0.18 | 6.7e-10 | -5.0 | -6.1 | 1.3e-09 | 0.76 | 0.80 | 0.20 | FALSE |
158 | PL2 | Csad | alternative polyA | ENSRNOT00000016205 | 0.37 | 0.19 | lasso | 5 | 0.19 | 1.0e-10 | -5.0 | 5.7 | 1.1e-08 | -0.48 | 0.81 | 0.19 | FALSE |
159 | PL2 | Csad | alternative TSS | ENSRNOT00000102299 | 0.22 | 0.12 | enet | 15 | 0.15 | 2.1e-08 | -5.0 | -5.2 | 1.8e-07 | 0.36 | 0.80 | 0.20 | FALSE |
160 | PL2 | Znf740 | gene expression | ENSRNOG00000012192 | 0.07 | 0.01 | blup | 1120 | 0.03 | 1.0e-02 | -5.0 | -6.1 | 1.1e-09 | 0.60 | 0.55 | 0.30 | FALSE |
161 | PL2 | Map3k12 | gene expression | ENSRNOG00000015134 | 0.33 | 0.12 | lasso | 6 | 0.13 | 9.9e-08 | -5.2 | -5.3 | 1.0e-07 | 0.46 | 0.13 | 0.87 | FALSE |
162 | PL2 | Atp5mc2 | gene expression | ENSRNOG00000015320 | 0.69 | 0.59 | enet | 128 | 0.60 | 2.9e-40 | -5.7 | 5.5 | 4.5e-08 | -0.45 | 0.11 | 0.89 | FALSE |
163 | PL2 | Krt1 | gene expression | ENSRNOG00000028996 | 0.08 | 0.09 | top1 | 1 | 0.09 | 8.2e-06 | -5.6 | 5.6 | 1.9e-08 | -0.90 | 0.22 | 0.44 | FALSE |
164 | PL2 | Letmd1 | gene expression | ENSRNOG00000029855 | 0.18 | 0.20 | blup | 1582 | 0.21 | 8.6e-12 | 5.0 | 5.1 | 2.8e-07 | -0.53 | 0.80 | 0.20 | FALSE |
165 | PL2 | Galnt6 | gene expression | ENSRNOG00000033059 | 0.16 | 0.12 | blup | 1453 | 0.16 | 3.8e-09 | -5.5 | 5.6 | 1.7e-08 | -0.95 | 0.37 | 0.63 | FALSE |
166 | PL2 | AABR07058899.1 | gene expression | ENSRNOG00000053802 | 0.09 | 0.05 | blup | 1550 | 0.09 | 2.0e-05 | 4.5 | 5.4 | 7.3e-08 | -0.62 | 0.66 | 0.33 | FALSE |
167 | PL2 | NA | gene expression | ENSRNOG00000065340 | 0.47 | 0.02 | blup | 987 | 0.03 | 7.1e-03 | -5.3 | -5.3 | 1.2e-07 | 0.98 | 0.44 | 0.49 | FALSE |
168 | PL2 | NA | gene expression | ENSRNOG00000070769 | 0.46 | 0.34 | blup | 1611 | 0.41 | 3.3e-24 | 5.0 | 5.9 | 3.0e-09 | -0.82 | 0.72 | 0.28 | FALSE |
169 | PL2 | Atp5mc2 | isoform ratio | ENSRNOT00000020676 | 0.48 | 0.42 | lasso | 22 | 0.43 | 1.7e-25 | -5.6 | 5.6 | 2.3e-08 | -0.46 | 0.11 | 0.89 | FALSE |
170 | PL2 | Atp5mc2 | isoform ratio | ENSRNOT00000090051 | 0.49 | 0.42 | lasso | 18 | 0.43 | 2.4e-25 | -5.6 | -5.6 | 2.2e-08 | 0.46 | 0.11 | 0.89 | FALSE |
171 | PL2 | Slc11a2 | isoform ratio | ENSRNOT00000026531 | 0.29 | 0.30 | enet | 45 | 0.33 | 1.0e-18 | 5.0 | 5.1 | 2.9e-07 | -0.59 | 0.56 | 0.44 | FALSE |
172 | PL2 | Atg101 | intron excision ratio | chr7:132398752:132401715 | 0.06 | 0.06 | top1 | 1 | 0.06 | 2.3e-04 | -5.7 | 5.7 | 1.2e-08 | -0.98 | 0.06 | 0.07 | FALSE |
173 | PL2 | Slc11a2 | intron excision ratio | chr7:131527869:131538125 | 0.11 | 0.09 | blup | 1550 | 0.11 | 2.3e-06 | 5.0 | 5.6 | 1.8e-08 | -0.72 | 0.50 | 0.49 | FALSE |
174 | PL2 | Tfcp2 | intron excision ratio | chr7:131627307:131627862 | 0.05 | 0.03 | blup | 1635 | 0.04 | 3.7e-03 | -4.2 | -5.6 | 2.2e-08 | 0.66 | 0.54 | 0.27 | FALSE |
175 | PL2 | Tfcp2 | intron excision ratio | chr7:131627910:131631939 | 0.06 | 0.02 | blup | 1635 | 0.04 | 4.3e-03 | -4.1 | 5.6 | 2.2e-08 | -0.65 | 0.54 | 0.26 | FALSE |
176 | PL2 | Spryd3 | mRNA stability | ENSRNOG00000010793 | 0.13 | 0.04 | blup | 1025 | 0.05 | 7.0e-04 | -5.3 | -5.1 | 2.6e-07 | 0.35 | 0.65 | 0.22 | FALSE |
177 | PL2 | Atp5mc2 | mRNA stability | ENSRNOG00000015320 | 0.62 | 0.55 | top1 | 1 | 0.55 | 6.5e-35 | -5.6 | 5.6 | 2.3e-08 | -0.36 | 0.10 | 0.90 | FALSE |
178 | PL2 | Atf1 | mRNA stability | ENSRNOG00000061088 | 0.21 | 0.15 | enet | 38 | 0.16 | 3.1e-09 | 5.0 | 5.5 | 3.5e-08 | -0.82 | 0.55 | 0.45 | FALSE |
h2: Heritability estimate for the given transcriptomic model. PP3: Posterior probability of two distinct causal variants. PP4: Posterior probability of a single shared causal variant. joint: Whether the RNA phenotype is in the joint model.