Best TWAS P=9.36e-10 · Best GWAS P=1.18e-09 conditioned to 1.00e+00
| Tissue | Gene | RNA modality | RNA phenotype | h2 | # weights | Model R2 | Model R2 P | TWAS Z | TWAS P | Coloc P | Joint |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Adipose | Atg7 | alternative polyA | NM_001012097.1 | 0.03 | 1 | 0.04 | 2.7e-05 | 5.62 | 1.86e-08 | 0.33 | FALSE |
| Adipose | Atg7 | alternative polyA | XM_008763239.3 | 0.03 | 1 | 0.04 | 5.6e-05 | -5.62 | 1.86e-08 | 0.24 | FALSE |
| Adipose | Tamm41 | gene expression | Tamm41 | 0.36 | 1464 | 0.34 | 1.9e-39 | 5.38 | 7.39e-08 | 0.01 | FALSE |
| Adipose | Timp4 | gene expression | Timp4 | 0.05 | 1 | 0.04 | 8.9e-06 | -5.74 | 9.69e-09 | 0.72 | FALSE |
| Adipose | Atg7 | isoform ratio | NM_001012097.1 | 0.16 | 1 | 0.12 | 1.0e-13 | 5.62 | 1.86e-08 | 0.64 | FALSE |
| Adipose | Atg7 | isoform ratio | XM_008763239.3 | 0.03 | 1 | 0.04 | 2.5e-05 | -5.62 | 1.86e-08 | 0.26 | FALSE |
| Adipose | Atg7 | isoform ratio | XR_005503229.1 | 0.14 | 1 | 0.1 | 1.9e-11 | -5.84 | 5.24e-09 | 0.86 | FALSE |
| Adipose | Tamm41 | mRNA stability | Tamm41 | 0.17 | 1464 | 0.15 | 8.3e-17 | 5.83 | 5.49e-09 | 0.68 | FALSE |
| BLA | Vgll4 | gene expression | Vgll4 | 0.3 | 1 | 0.24 | 2.5e-13 | -5.74 | 9.35e-09 | 0.74 | FALSE |
| Brain | LOC108350745 | gene expression | LOC108350745 | 0.06 | 1934 | 0.05 | 9.5e-06 | -5.26 | 1.44e-07 | 0.67 | FALSE |
| Brain | Tamm41 | gene expression | Tamm41 | 0.13 | 1468 | 0.09 | 7.8e-09 | 5.92 | 3.26e-09 | 0.71 | FALSE |
| Brain | Vgll4 | gene expression | Vgll4 | 0.18 | 1526 | 0.16 | 4.3e-15 | 5.28 | 1.29e-07 | 0.01 | FALSE |
| Brain | Atg7 | isoform ratio | NM_001012097.1 | 0.18 | 53 | 0.19 | 9.7e-18 | 5.79 | 7.14e-09 | 0.79 | FALSE |
| Brain | Atg7 | isoform ratio | XR_005503229.1 | 0.2 | 51 | 0.2 | 3.4e-18 | -5.84 | 5.30e-09 | 0.78 | FALSE |
| Brain | Mkrn2 | isoform ratio | NM_001008314.1 | 0.15 | 30 | 0.07 | 9.5e-07 | 5.37 | 7.79e-08 | 0.82 | FALSE |
| Brain | Hrh1 | mRNA stability | Hrh1 | 0.08 | 1 | 0.09 | 6.4e-09 | -5.74 | 9.28e-09 | 0.8 | FALSE |
| IL | Tamm41 | gene expression | Tamm41 | 0.24 | 1 | 0.1 | 2.7e-03 | -5.82 | 5.76e-09 | 0.09 | FALSE |
| IL | Vgll4 | gene expression | Vgll4 | 0.24 | 1526 | 0.13 | 4.8e-04 | 5.93 | 3.02e-09 | 0.61 | FALSE |
| IL | Atg7 | isoform ratio | NM_001012097.1 | 0.24 | 1958 | 0.09 | 3.0e-03 | -5.52 | 3.47e-08 | 0.52 | FALSE |
| IL | Atg7 | isoform ratio | XR_005503229.1 | 0.25 | 1958 | 0.1 | 1.8e-03 | 5.55 | 2.93e-08 | 0.55 | FALSE |
| LHb | Tamm41 | gene expression | Tamm41 | 0.37 | 16 | 0.09 | 4.1e-03 | 6.12 | 9.36e-10 | 0.7 | TRUE |
| LHb | Vgll4 | gene expression | Vgll4 | 0.21 | 16 | 0.1 | 2.3e-03 | 5.69 | 1.29e-08 | 0.44 | FALSE |
| Liver | Vgll4 | alternative TSS | XM_039107420.1 | 0.03 | 1 | 0.03 | 5.3e-04 | 5.62 | 1.90e-08 | 0.05 | FALSE |
| Liver | Atg7 | gene expression | Atg7 | 0.13 | 1 | 0.18 | 1.8e-19 | 5.74 | 9.28e-09 | 0.78 | FALSE |
| Liver | Tamm41 | gene expression | Tamm41 | 0.22 | 66 | 0.2 | 1.6e-21 | -5.46 | 4.79e-08 | 0.46 | FALSE |
| Liver | Vgll4 | gene expression | Vgll4 | 0.06 | 1522 | 0.05 | 2.5e-06 | 5.84 | 5.22e-09 | 0.7 | FALSE |
| Liver | Atg7 | mRNA stability | Atg7 | 0.03 | 1955 | 0.03 | 1.1e-04 | -5.28 | 1.31e-07 | 0.64 | FALSE |
| Liver | Tamm41 | mRNA stability | Tamm41 | 0.05 | 1 | 0.05 | 3.5e-06 | -5.73 | 9.89e-09 | 0.65 | FALSE |
| NAcc | Vgll4 | alternative TSS | NM_001394032.1 | 0.07 | 1 | 0.07 | 3.2e-08 | -5.73 | 1.03e-08 | 0.72 | FALSE |
| NAcc | Vgll4 | alternative TSS | NM_001394032.1 | 0.08 | 1 | 0.07 | 2.8e-08 | -5.73 | 1.03e-08 | 0.72 | FALSE |
| NAcc | Vgll4 | gene expression | Vgll4 | 0.56 | 54 | 0.47 | 1.2e-60 | -5.63 | 1.81e-08 | 0.6 | FALSE |
| NAcc | Atg7 | isoform ratio | NM_001012097.1 | 0.12 | 1 | 0.1 | 6.1e-12 | 5.64 | 1.73e-08 | 0.66 | FALSE |
| NAcc | Atg7 | isoform ratio | XR_005503229.1 | 0.12 | 1 | 0.1 | 9.0e-12 | -5.64 | 1.73e-08 | 0.66 | FALSE |
| NAcc | Vgll4 | isoform ratio | NM_001394032.1 | 0.04 | 1 | 0.04 | 1.1e-05 | -5.73 | 1.03e-08 | 0.43 | FALSE |
| NAcc | Vgll4 | intron excision ratio | chr4_148027101_148037414 | 0.03 | 1 | 0.03 | 2.1e-04 | 5.66 | 1.52e-08 | 0.06 | FALSE |
| NAcc | Vgll4 | intron excision ratio | chr4_148027101_148038252 | 0.02 | 1 | 0.03 | 3.1e-04 | -5.66 | 1.52e-08 | 0.05 | FALSE |
| OFC | Vgll4 | gene expression | Vgll4 | 0.17 | 92 | 0.08 | 6.1e-03 | -5.92 | 3.19e-09 | 0.41 | FALSE |
| PL | LOC108350745 | gene expression | LOC108350745 | 0.04 | 1934 | 0.03 | 7.3e-04 | -5.17 | 2.30e-07 | 0.46 | FALSE |
| PL | Tamm41 | gene expression | Tamm41 | 0.03 | 9 | 0.02 | 1.3e-03 | -5.34 | 9.07e-08 | 0.44 | FALSE |
| PL | Vgll4 | gene expression | Vgll4 | 0.29 | 56 | 0.25 | 5.0e-27 | -5.48 | 4.26e-08 | 0.45 | FALSE |
| PL | Atg7 | isoform ratio | NM_001012097.1 | 0.24 | 1 | 0.22 | 8.2e-24 | 5.52 | 3.39e-08 | 0.51 | FALSE |
| PL | Atg7 | isoform ratio | XR_005503229.1 | 0.24 | 1 | 0.22 | 2.0e-23 | -5.52 | 3.39e-08 | 0.51 | FALSE |
| pVTA | Tamm41 | gene expression | Tamm41 | 0.1 | 1 | 0.07 | 6.5e-04 | -5.64 | 1.74e-08 | 0.07 | FALSE |
| pVTA | Vgll4 | gene expression | Vgll4 | 0.18 | 3 | 0.15 | 3.7e-07 | 5.37 | 7.68e-08 | 0.41 | FALSE |
| pVTA | Atg7 | isoform ratio | NM_001012097.1 | 0.14 | 1 | 0.16 | 2.4e-07 | 5.52 | 3.44e-08 | 0.39 | FALSE |
| pVTA | Atg7 | isoform ratio | XR_005503229.1 | 0.13 | 1 | 0.15 | 6.7e-07 | -5.53 | 3.14e-08 | 0.33 | FALSE |
| RMTg | Vgll4 | alternative polyA | NM_001394032.1 | 0.19 | 1 | 0.05 | 1.6e-02 | 5.59 | 2.28e-08 | 0.05 | FALSE |
| RMTg | Vgll4 | alternative polyA | XM_008763231.3 | 0.25 | 1 | 0.08 | 2.9e-03 | -5.59 | 2.28e-08 | 0.05 | FALSE |
| RMTg | Atg7 | isoform ratio | NM_001012097.1 | 0.43 | 1 | 0.14 | 1.3e-04 | 5.59 | 2.28e-08 | 0.07 | FALSE |