Best TWAS P=6.19e-09 · Best GWAS P=2.56e-09 conditioned to 1.00e+00
Tissue | Gene | RNA modality | RNA phenotype | h2 | # weights | Model R2 | Model R2 P | TWAS Z | TWAS P | Coloc P | Joint |
---|---|---|---|---|---|---|---|---|---|---|---|
Adipose | Slc35a1 | alternative TSS | ENSRNOT00000011969 | 0.02 | 1 | 0.02 | 3.7e-03 | 5.44 | 5.32e-08 | 0.04 | FALSE |
Adipose | Slc35a1 | alternative TSS | ENSRNOT00000081150 | 0.02 | 1 | 0.02 | 4.4e-03 | -5.44 | 5.32e-08 | 0.04 | FALSE |
Adipose | Cnr1 | gene expression | ENSRNOG00000008223 | 0.06 | 1345 | 0.03 | 3.1e-04 | 5.16 | 2.52e-07 | 0.42 | FALSE |
Adipose | Orc3 | gene expression | ENSRNOG00000008314 | 0.03 | 1 | 0.02 | 5.9e-03 | -5.28 | 1.31e-07 | 0.03 | FALSE |
Adipose | RGD1359108 | gene expression | ENSRNOG00000009478 | 0.13 | 1 | 0.06 | 1.9e-07 | -5.8 | 6.72e-09 | 0.78 | FALSE |
Adipose | Slc35a1 | isoform ratio | ENSRNOT00000011969 | 0.02 | 1 | 0.01 | 8.6e-03 | 5.28 | 1.31e-07 | 0.03 | FALSE |
Adipose | Rars2 | intron excision ratio | chr5:49210334:49211494 | 0.03 | 1 | 0.02 | 1.2e-03 | 5.36 | 8.34e-08 | 0.04 | FALSE |
Adipose | Slc35a1 | mRNA stability | ENSRNOG00000008908 | 0.06 | 1 | 0.03 | 3.0e-04 | 5.21 | 1.90e-07 | 0.11 | FALSE |
BLA | Rars2 | gene expression | ENSRNOG00000008643 | 0.08 | 1563 | 0.08 | 7.2e-05 | 5.2 | 2.03e-07 | 0.51 | FALSE |
BLA | Cfap206 | gene expression | ENSRNOG00000009061 | 0.85 | 53 | 0.65 | 2.7e-45 | -5.25 | 1.54e-07 | 0.44 | FALSE |
BLA | Rars2 | mRNA stability | ENSRNOG00000008643 | 0.15 | 12 | 0.12 | 5.2e-07 | 5.39 | 6.97e-08 | 0.53 | FALSE |
BLA | Slc35a1 | mRNA stability | ENSRNOG00000008908 | 0.07 | 1 | 0.04 | 2.9e-03 | 5.34 | 9.33e-08 | 0.05 | FALSE |
BLA | RGD1359108 | mRNA stability | ENSRNOG00000009478 | 0.11 | 22 | 0.07 | 1.8e-04 | 5.7 | 1.22e-08 | 0.73 | TRUE |
Brain | Rars2 | alternative polyA | ENSRNOT00000011688 | 0.26 | 1 | 0.18 | 4.4e-16 | -5.31 | 1.09e-07 | 0.58 | FALSE |
Brain | Rars2 | alternative polyA | ENSRNOT00000115962 | 0.26 | 1 | 0.18 | 3.9e-16 | 5.31 | 1.09e-07 | 0.58 | FALSE |
Brain | Orc3 | gene expression | ENSRNOG00000008314 | 0.03 | 1563 | 0.02 | 2.7e-03 | -5.29 | 1.22e-07 | 0.49 | FALSE |
Brain | Cfap206 | gene expression | ENSRNOG00000009061 | 0.51 | 26 | 0.63 | 9.3e-76 | -5.38 | 7.45e-08 | 0.44 | TRUE |
Brain | Rars2 | isoform ratio | ENSRNOT00000011688 | 0.05 | 1 | 0.07 | 9.5e-07 | -5.34 | 9.33e-08 | 0.53 | FALSE |
Brain | Rars2 | isoform ratio | ENSRNOT00000115962 | 0.05 | 1 | 0.07 | 5.9e-07 | 5.34 | 9.33e-08 | 0.52 | FALSE |
Brain | Slc35a1 | intron excision ratio | chr5:49226632:49230692 | 0.05 | 1548 | 0.03 | 8.2e-04 | -5.3 | 1.16e-07 | 0.49 | FALSE |
Brain | Slc35a1 | mRNA stability | ENSRNOG00000008908 | 0.08 | 1548 | 0.06 | 2.5e-06 | 5.26 | 1.45e-07 | 0.53 | FALSE |
Brain | RGD1359108 | mRNA stability | ENSRNOG00000009478 | 0.16 | 1015 | 0.12 | 3.0e-11 | 5.74 | 9.44e-09 | 0.76 | FALSE |
IL | Rars2 | alternative polyA | ENSRNOT00000011688 | 0.22 | 1 | 0.12 | 8.3e-04 | -5.25 | 1.52e-07 | 0.06 | FALSE |
IL | Rars2 | alternative polyA | ENSRNOT00000115962 | 0.22 | 1 | 0.12 | 9.2e-04 | 5.25 | 1.52e-07 | 0.06 | FALSE |
IL | Cfap206 | gene expression | ENSRNOG00000009061 | 0.42 | 1500 | 0.23 | 3.9e-06 | -5.16 | 2.46e-07 | 0.44 | FALSE |
IL | Rars2 | isoform ratio | ENSRNOT00000011688 | 0.16 | 3 | 0.15 | 1.7e-04 | -5.26 | 1.44e-07 | 0.38 | FALSE |
IL | Rars2 | isoform ratio | ENSRNOT00000115962 | 0.15 | 4 | 0.13 | 4.5e-04 | 5.26 | 1.46e-07 | 0.36 | FALSE |
IL | Slc35a1 | intron excision ratio | chr5:49230826:49231247 | 0.14 | 1 | 0.04 | 4.6e-02 | 5.2 | 2.02e-07 | 0.05 | FALSE |
IL | Cnr1 | mRNA stability | ENSRNOG00000008223 | 0.23 | 2 | 0.08 | 5.6e-03 | -5.12 | 3.04e-07 | 0.35 | FALSE |
LHb | Cfap206 | gene expression | ENSRNOG00000009061 | 0.7 | 5 | 0.41 | 7.2e-11 | -5.29 | 1.19e-07 | 0.46 | FALSE |
LHb | Rars2 | mRNA stability | ENSRNOG00000008643 | 0.17 | 3 | 0.1 | 2.8e-03 | 5.16 | 2.48e-07 | 0.38 | FALSE |
Liver | Rars2 | alternative TSS | ENSRNOT00000011688 | 0.12 | 1562 | 0.1 | 4.8e-11 | -5.14 | 2.70e-07 | 0.48 | FALSE |
Liver | Orc3 | gene expression | ENSRNOG00000008314 | 0.02 | 1 | 0.01 | 2.1e-02 | -5.19 | 2.06e-07 | 0.03 | FALSE |
Liver | Slc35a1 | gene expression | ENSRNOG00000008908 | 0.14 | 1 | 0.09 | 1.9e-10 | 5.12 | 3.12e-07 | 0.35 | TRUE |
Liver | Slc35a1 | isoform ratio | ENSRNOT00000011969 | 0.03 | 1 | 0.02 | 2.6e-03 | 5.44 | 5.32e-08 | 0.04 | FALSE |
Liver | Slc35a1 | isoform ratio | ENSRNOT00000081150 | 0.04 | 1548 | 0.01 | 1.8e-02 | -5.22 | 1.82e-07 | 0.39 | TRUE |
Liver | Rars2 | intron excision ratio | chr5:49184400:49186141 | 0.21 | 6 | 0.12 | 1.8e-13 | -5.15 | 2.54e-07 | 0.43 | FALSE |
Liver | Rars2 | intron excision ratio | chr5:49184400:49187818 | 0.15 | 1 | 0.11 | 3.0e-12 | 5.15 | 2.54e-07 | 0.38 | FALSE |
Liver | Rars2 | intron excision ratio | chr5:49222641:49232932 | 0.03 | 18 | 0.01 | 4.3e-02 | 5.32 | 1.02e-07 | 0.39 | FALSE |
NAcc | Rars2 | alternative polyA | ENSRNOT00000011688 | 0.11 | 1 | 0.06 | 1.3e-05 | -5.29 | 1.25e-07 | 0.3 | FALSE |
NAcc | Rars2 | alternative polyA | ENSRNOT00000115962 | 0.1 | 1 | 0.06 | 1.4e-05 | 5.29 | 1.25e-07 | 0.3 | FALSE |
NAcc | Cfap206 | gene expression | ENSRNOG00000009061 | 0.59 | 17 | 0.51 | 1.3e-43 | -5.31 | 1.10e-07 | 0.47 | FALSE |
NAcc | RGD1359108 | gene expression | ENSRNOG00000009478 | 0.08 | 1 | 0.05 | 1.5e-04 | 5.81 | 6.19e-09 | 0.17 | TRUE |
NAcc | Rars2 | isoform ratio | ENSRNOT00000011688 | 0.05 | 1 | 0.04 | 8.2e-04 | -5.37 | 7.99e-08 | 0.06 | FALSE |
NAcc | Rars2 | isoform ratio | ENSRNOT00000115962 | 0.05 | 1 | 0.04 | 7.9e-04 | 5.37 | 7.99e-08 | 0.07 | FALSE |
NAcc | Slc35a1 | intron excision ratio | chr5:49226632:49230692 | 0.04 | 2 | 0.03 | 2.3e-03 | -5.2 | 1.98e-07 | 0.48 | FALSE |
NAcc | Slc35a1 | mRNA stability | ENSRNOG00000008908 | 0.04 | 1 | 0.02 | 6.4e-03 | 5.16 | 2.48e-07 | 0.04 | FALSE |
NAcc | Cfap206 | mRNA stability | ENSRNOG00000009061 | 0.04 | 1 | 0.04 | 1.0e-03 | -5.16 | 2.48e-07 | 0.04 | FALSE |
NAcc | RGD1359108 | mRNA stability | ENSRNOG00000009478 | 0.17 | 20 | 0.08 | 1.0e-06 | 5.8 | 6.83e-09 | 0.76 | FALSE |
OFC | RGD1359108 | gene expression | ENSRNOG00000009478 | 0.29 | 1 | 0.08 | 5.7e-03 | 5.3 | 1.19e-07 | 0.05 | TRUE |
PL | Rars2 | alternative polyA | ENSRNOT00000011688 | 0.05 | 1 | 0.04 | 7.8e-04 | -5.15 | 2.61e-07 | 0.06 | FALSE |
PL | Rars2 | alternative polyA | ENSRNOT00000115962 | 0.05 | 1 | 0.03 | 1.4e-03 | 5.15 | 2.61e-07 | 0.05 | FALSE |
PL | RGD1359108 | gene expression | ENSRNOG00000009478 | 0.2 | 1 | 0.07 | 1.0e-05 | 5.8 | 6.72e-09 | 0.59 | FALSE |
PL | RGD1359108 | mRNA stability | ENSRNOG00000009478 | 0.08 | 1 | 0.05 | 2.0e-04 | 5.22 | 1.78e-07 | 0.05 | FALSE |