Best TWAS P = 6.32e-09 · Best GWAS P= 4.44e-08 conditioned to 1.38e-02
| Tissue | Gene | RNA modality | RNA phenotype | h2 | # weights | Model R2 | Model R2 P | TWAS Z | TWAS P | Coloc P | Joint |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Adipose | Agr2 | gene expression | Agr2 | 0.08 | 2900 | 0.06 | 3.4e-07 | -5.33 | 9.83e-08 | 0.21 | FALSE |
| BLA | Ankmy2 | gene expression | Ankmy2 | 0.1 | 65 | 0.05 | 9.2e-04 | 5.37 | 7.70e-08 | 0.45 | FALSE |
| Brain | Hdac9 | alternative polyA | XM_063262503.1 | 0.1 | 34 | 0.07 | 2.8e-07 | -5.27 | 1.34e-07 | 0.73 | TRUE |
| Brain | Ankmy2 | mRNA stability | Ankmy2 | 0.51 | 79 | 0.32 | 5.4e-31 | -5.36 | 8.37e-08 | 0.35 | FALSE |
| IC | Hdac9 | alternative polyA | XM_063262499.1 | 0.17 | 2 | 0.1 | 4.3e-05 | 5.25 | 1.49e-07 | 0.65 | FALSE |
| IC | Hdac9 | alternative polyA | XM_063262503.1 | 0.2 | 1 | 0.13 | 5.5e-06 | -5.25 | 1.56e-07 | 0.26 | FALSE |
| IC | Ahr | gene expression | Ahr | 0.08 | 1 | 0.03 | 1.5e-02 | -5.39 | 6.93e-08 | 0.05 | TRUE |
| IC | Ankmy2 | gene expression | Ankmy2 | 0.16 | 3131 | 0.08 | 2.1e-04 | 5.28 | 1.28e-07 | 0.38 | FALSE |
| IC | Tspan13 | gene expression | Tspan13 | 0.3 | 2922 | 0.23 | 7.4e-10 | -5.43 | 5.50e-08 | 0.07 | FALSE |
| IL | Hdac9 | alternative TSS | NM_001200045.1 | 0.12 | 2250 | 0.1 | 2.2e-03 | -5.81 | 6.32e-09 | 0.36 | TRUE |
| IL | Ankmy2 | mRNA stability | Ankmy2 | 0.18 | 1 | 0.07 | 7.8e-03 | -5.31 | 1.11e-07 | 0.05 | FALSE |
| Liver | Ahr | mRNA stability | Ahr | 0.02 | 2918 | 0.01 | 1.4e-02 | 5.31 | 1.07e-07 | 0.32 | FALSE |
| OFC | Hdac9 | alternative polyA | XM_063262499.1 | 0.37 | 3 | 0.12 | 1.0e-03 | 5.63 | 1.76e-08 | 0.38 | FALSE |
| OFC | Hdac9 | alternative polyA | XM_063262503.1 | 0.32 | 4 | 0.1 | 1.9e-03 | -5.56 | 2.68e-08 | 0.36 | FALSE |
| PL | Hdac9 | alternative polyA | XM_063262499.1 | 0.03 | 1 | 0.02 | 1.3e-03 | 5.26 | 1.44e-07 | 0.07 | FALSE |
| pVTA | Hdac9 | alternative polyA | XM_063262499.1 | 0.05 | 1 | 0.04 | 2.7e-04 | 5.25 | 1.56e-07 | 0.3 | FALSE |
| pVTA | Tspan13 | gene expression | Tspan13 | 0.05 | 2922 | 0.04 | 1.7e-04 | 5.44 | 5.39e-08 | 0.27 | FALSE |