Best TWAS P=2.068052e-20 · Best GWAS P=2.307522e-20 conditioned to NaN
# | Tissue | Gene | Modality | RNA phenotype | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | Adipose | Kif16b | alternative polyA | ENSRNOT00000118037 | 0.08 | 0.05 | top1 | 1 | 0.05 | 5.3e-06 | 6.85 | 6.9 | 7.3e-12 | -0.67 | 0.45 | 0.02 | FALSE |
2 | Adipose | Dstn | gene expression | ENSRNOG00000005924 | 0.59 | 0.44 | blup | 1575 | 0.48 | 3.4e-60 | -7.67 | 7.7 | 1.3e-14 | -0.92 | 0.97 | 0.03 | FALSE |
3 | Adipose | Dzank1 | gene expression | ENSRNOG00000007440 | 0.07 | 0.03 | top1 | 1 | 0.03 | 1.2e-04 | -6.84 | -6.8 | 7.8e-12 | 0.89 | 0.54 | 0.03 | FALSE |
4 | Adipose | Rbbp9 | gene expression | ENSRNOG00000007972 | 0.22 | 0.07 | top1 | 1 | 0.07 | 2.9e-08 | 6.68 | 6.7 | 2.4e-11 | -0.75 | 0.96 | 0.01 | FALSE |
5 | Adipose | Dtd1 | gene expression | ENSRNOG00000008746 | 0.28 | 0.14 | lasso | 19 | 0.15 | 5.0e-16 | -6.92 | 7.1 | 1.1e-12 | -0.89 | 0.53 | 0.47 | FALSE |
6 | Adipose | Snrpb2 | mRNA stability | ENSRNOG00000004967 | 0.04 | 0.01 | enet | 20 | 0.01 | 1.5e-02 | 8.52 | -8.6 | 1.0e-17 | 0.73 | 0.59 | 0.33 | FALSE |
7 | Adipose | Dstn | mRNA stability | ENSRNOG00000005924 | 0.83 | 0.57 | enet | 184 | 0.60 | 1.1e-83 | -7.67 | 7.0 | 3.2e-12 | -0.87 | 1.00 | 0.00 | FALSE |
8 | Adipose | Dzank1 | mRNA stability | ENSRNOG00000007440 | 0.04 | 0.00 | blup | 1806 | 0.01 | 6.3e-02 | -4.84 | 5.1 | 2.8e-07 | -0.63 | 0.81 | 0.06 | FALSE |
9 | Adipose | Sec23b | mRNA stability | ENSRNOG00000008411 | 0.08 | 0.06 | top1 | 1 | 0.06 | 5.6e-07 | 7.00 | 7.0 | 2.6e-12 | -0.79 | 0.84 | 0.09 | FALSE |
10 | BLA | Kif16b | gene expression | ENSRNOG00000004951 | 0.04 | 0.04 | top1 | 1 | 0.04 | 4.1e-03 | 8.79 | 8.8 | 1.5e-18 | -0.91 | 0.09 | 0.04 | FALSE |
11 | BLA | Snrpb2 | gene expression | ENSRNOG00000004967 | 0.05 | 0.02 | top1 | 1 | 0.02 | 4.4e-02 | 8.91 | 8.9 | 5.2e-19 | -0.94 | 0.08 | 0.04 | FALSE |
12 | BLA | Pcsk2 | gene expression | ENSRNOG00000005438 | 0.11 | 0.07 | top1 | 1 | 0.07 | 1.9e-04 | 8.57 | 8.6 | 1.0e-17 | -0.97 | 0.12 | 0.04 | FALSE |
13 | BLA | Dstn | gene expression | ENSRNOG00000005924 | 0.84 | 0.63 | enet | 268 | 0.64 | 9.8e-44 | -7.98 | 8.0 | 1.3e-15 | -0.95 | 0.76 | 0.24 | FALSE |
14 | BLA | Sec23b | gene expression | ENSRNOG00000008411 | 0.87 | 0.64 | lasso | 39 | 0.67 | 5.9e-48 | 6.60 | 6.6 | 3.7e-11 | -0.82 | 0.98 | 0.01 | FALSE |
15 | BLA | Dtd1 | gene expression | ENSRNOG00000008746 | 0.25 | 0.14 | lasso | 2 | 0.16 | 4.4e-09 | -5.44 | 6.3 | 3.4e-10 | -0.79 | 0.76 | 0.24 | FALSE |
16 | BLA | Scp2d1 | gene expression | ENSRNOG00000009461 | 0.32 | 0.23 | lasso | 11 | 0.23 | 2.1e-12 | -5.26 | -5.4 | 6.5e-08 | -0.14 | 1.00 | 0.00 | TRUE |
17 | BLA | Zfp133 | gene expression | ENSRNOG00000027955 | 0.06 | 0.04 | lasso | 6 | 0.07 | 1.9e-04 | 6.33 | -6.3 | 3.8e-10 | 0.76 | 0.63 | 0.14 | FALSE |
18 | BLA | Otor | gene expression | ENSRNOG00000028721 | 0.07 | 0.04 | blup | 1960 | 0.04 | 2.7e-03 | 6.50 | -8.6 | 5.9e-18 | 0.80 | 0.52 | 0.23 | FALSE |
19 | BLA | Smim26 | gene expression | ENSRNOG00000036971 | 0.11 | 0.05 | enet | 41 | 0.06 | 5.0e-04 | 6.63 | 7.1 | 1.3e-12 | -0.83 | 0.56 | 0.37 | FALSE |
20 | BLA | NA | gene expression | ENSRNOG00000067833 | 0.09 | 0.02 | top1 | 1 | 0.02 | 3.9e-02 | -6.56 | 6.6 | 5.2e-11 | -0.79 | 0.08 | 0.04 | FALSE |
21 | BLA | Rbbp9 | intron excision ratio | chr3:131927367:131929585 | 0.14 | 0.07 | top1 | 1 | 0.07 | 8.2e-05 | -7.65 | 7.7 | 2.0e-14 | -0.87 | 0.07 | 0.62 | FALSE |
22 | BLA | Rbbp9 | intron excision ratio | chr3:131929308:131929585 | 0.13 | 0.08 | top1 | 1 | 0.07 | 7.7e-05 | -7.65 | -7.7 | 2.0e-14 | 0.87 | 0.07 | 0.52 | FALSE |
23 | BLA | Rbbp9 | intron excision ratio | chr3:131929690:131930645 | 0.08 | 0.04 | blup | 1819 | 0.04 | 2.9e-03 | 7.16 | 6.3 | 2.4e-10 | -0.78 | 0.45 | 0.44 | FALSE |
24 | BLA | Rbbp9 | intron excision ratio | chr3:131929690:131931999 | 0.17 | 0.14 | top1 | 1 | 0.14 | 6.7e-08 | 7.16 | -7.2 | 8.2e-13 | 0.77 | 0.73 | 0.22 | FALSE |
25 | BLA | Sec23b | intron excision ratio | chr3:131955920:131958981 | 0.09 | 0.04 | lasso | 17 | 0.05 | 1.7e-03 | 6.63 | 6.7 | 2.8e-11 | -0.82 | 0.76 | 0.18 | FALSE |
26 | BLA | Pcsk2 | mRNA stability | ENSRNOG00000005438 | 0.23 | 0.15 | top1 | 1 | 0.15 | 3.1e-08 | -8.90 | -8.9 | 5.3e-19 | 0.99 | 0.61 | 0.31 | FALSE |
27 | BLA | Dstn | mRNA stability | ENSRNOG00000005924 | 0.45 | 0.38 | enet | 182 | 0.39 | 2.2e-22 | -8.92 | 8.9 | 5.3e-19 | -0.98 | 0.38 | 0.62 | FALSE |
28 | BLA | Kat14 | mRNA stability | ENSRNOG00000007160 | 0.05 | 0.03 | enet | 4 | 0.03 | 9.8e-03 | 8.31 | -7.4 | 1.0e-13 | 0.87 | 0.43 | 0.14 | FALSE |
29 | BLA | Sec23b | mRNA stability | ENSRNOG00000008411 | 0.42 | 0.32 | lasso | 9 | 0.33 | 2.8e-18 | 6.58 | 6.6 | 4.6e-11 | 0.81 | 0.98 | 0.02 | TRUE |
30 | Brain | Scp2d1 | alternative polyA | ENSRNOT00000012524 | 0.03 | 0.04 | top1 | 1 | 0.04 | 2.7e-04 | -5.13 | -5.1 | 2.9e-07 | 0.75 | 0.15 | 0.03 | FALSE |
31 | Brain | Rrbp1 | alternative TSS | ENSRNOT00000055602 | 0.03 | 0.02 | blup | 1597 | 0.03 | 2.1e-03 | -6.99 | -7.4 | 1.5e-13 | 0.92 | 0.49 | 0.39 | FALSE |
32 | Brain | Rrbp1 | alternative TSS | ENSRNOT00000101060 | 0.03 | 0.02 | blup | 1597 | 0.02 | 2.7e-03 | -6.99 | 7.5 | 6.5e-14 | -0.93 | 0.48 | 0.38 | FALSE |
33 | Brain | Kif16b | gene expression | ENSRNOG00000004951 | 0.19 | 0.03 | enet | 74 | 0.09 | 1.0e-08 | 7.04 | 5.7 | 9.2e-09 | -0.37 | 0.93 | 0.07 | FALSE |
34 | Brain | Snrpb2 | gene expression | ENSRNOG00000004967 | 0.06 | 0.03 | blup | 1963 | 0.05 | 1.0e-05 | 8.64 | 7.3 | 2.8e-13 | -0.83 | 0.61 | 0.38 | TRUE |
35 | Brain | Pcsk2 | gene expression | ENSRNOG00000005438 | 0.38 | 0.44 | top1 | 1 | 0.44 | 3.9e-44 | 8.95 | 8.9 | 3.7e-19 | -0.96 | 0.58 | 0.42 | FALSE |
36 | Brain | Dstn | gene expression | ENSRNOG00000005924 | 0.72 | 0.80 | enet | 189 | 0.80 | 3.2e-120 | -7.57 | 7.8 | 8.2e-15 | -0.93 | 1.00 | 0.00 | FALSE |
37 | Brain | Rrbp1 | gene expression | ENSRNOG00000005958 | 0.14 | 0.15 | blup | 1597 | 0.16 | 4.1e-15 | -7.74 | -8.2 | 1.6e-16 | 0.96 | 0.72 | 0.28 | FALSE |
38 | Brain | Dzank1 | gene expression | ENSRNOG00000007440 | 0.08 | 0.04 | blup | 1807 | 0.07 | 2.7e-07 | -6.46 | -5.3 | 1.2e-07 | 0.72 | 0.51 | 0.49 | FALSE |
39 | Brain | Sec23b | gene expression | ENSRNOG00000008411 | 0.78 | 0.78 | enet | 128 | 0.80 | 7.8e-119 | 6.61 | 6.9 | 3.8e-12 | -0.87 | 0.99 | 0.01 | FALSE |
40 | Brain | Dtd1 | gene expression | ENSRNOG00000008746 | 0.16 | 0.17 | top1 | 1 | 0.17 | 3.5e-15 | -6.81 | 6.8 | 9.4e-12 | -0.86 | 0.92 | 0.08 | FALSE |
41 | Brain | Scp2d1 | gene expression | ENSRNOG00000009461 | 0.20 | 0.23 | lasso | 26 | 0.25 | 7.6e-23 | -5.33 | -5.2 | 2.6e-07 | 0.38 | 1.00 | 0.00 | FALSE |
42 | Brain | Zfp133 | gene expression | ENSRNOG00000027955 | 0.17 | 0.16 | top1 | 1 | 0.16 | 2.7e-14 | -7.03 | -7.0 | 2.1e-12 | 0.88 | 0.96 | 0.04 | FALSE |
43 | Brain | Otor | gene expression | ENSRNOG00000028721 | 0.10 | 0.09 | enet | 25 | 0.11 | 5.1e-10 | -8.91 | -8.3 | 1.1e-16 | 0.57 | 0.66 | 0.34 | FALSE |
44 | Brain | Smim26 | gene expression | ENSRNOG00000036971 | 0.11 | 0.08 | top1 | 1 | 0.07 | 1.6e-07 | 6.40 | 6.4 | 1.6e-10 | -0.72 | 0.98 | 0.01 | FALSE |
45 | Brain | NA | gene expression | ENSRNOG00000067833 | 0.35 | 0.03 | enet | 345 | 0.09 | 6.8e-09 | 0.77 | 6.4 | 1.8e-10 | -0.81 | 0.63 | 0.37 | FALSE |
46 | Brain | Snrpb2 | intron excision ratio | chr3:130399307:130400989 | 0.03 | 0.03 | top1 | 1 | 0.03 | 5.7e-04 | 8.99 | 9.0 | 2.4e-19 | -0.93 | 0.07 | 0.04 | FALSE |
47 | Brain | Sec23b | intron excision ratio | chr3:131955920:131958981 | 0.30 | 0.22 | enet | 118 | 0.22 | 3.0e-20 | 6.72 | 7.0 | 3.4e-12 | -0.86 | 0.94 | 0.06 | FALSE |
48 | Brain | Kif16b | mRNA stability | ENSRNOG00000004951 | 0.07 | 0.01 | top1 | 1 | 0.01 | 1.5e-02 | 6.74 | -6.7 | 1.5e-11 | 0.31 | 0.12 | 0.03 | FALSE |
49 | Brain | Snrpb2 | mRNA stability | ENSRNOG00000004967 | 0.03 | 0.01 | blup | 1963 | 0.01 | 1.3e-02 | 8.90 | 7.1 | 1.0e-12 | -0.81 | 0.54 | 0.30 | FALSE |
50 | Brain | Dstn | mRNA stability | ENSRNOG00000005924 | 0.71 | 0.52 | enet | 239 | 0.52 | 1.2e-56 | -7.74 | 8.0 | 9.3e-16 | -0.92 | 1.00 | 0.00 | FALSE |
51 | Brain | Sec23b | mRNA stability | ENSRNOG00000008411 | 0.55 | 0.64 | enet | 164 | 0.65 | 6.8e-80 | 6.61 | 6.9 | 5.8e-12 | -0.86 | 0.98 | 0.02 | FALSE |
52 | Brain | Dtd1 | mRNA stability | ENSRNOG00000008746 | 0.08 | 0.04 | lasso | 3 | 0.07 | 1.7e-07 | -5.43 | 6.0 | 2.0e-09 | -0.73 | 0.81 | 0.18 | FALSE |
53 | Brain | Smim26 | mRNA stability | ENSRNOG00000036971 | 0.03 | 0.02 | top1 | 1 | 0.02 | 2.7e-03 | 7.01 | 7.0 | 2.4e-12 | -0.75 | 0.08 | 0.04 | FALSE |
54 | Eye | Dstn | gene expression | ENSRNOG00000005924 | 0.77 | 0.20 | blup | 1048 | 0.25 | 1.1e-04 | -8.64 | 8.0 | 1.4e-15 | -0.96 | 0.48 | 0.36 | FALSE |
55 | Eye | Sec23b | gene expression | ENSRNOG00000008411 | 0.81 | 0.22 | lasso | 19 | 0.29 | 2.1e-05 | -7.65 | 7.5 | 8.1e-14 | -0.91 | 0.29 | 0.61 | FALSE |
56 | Eye | Zfp133 | intron excision ratio | chr3:131829590:131840865 | 0.30 | 0.03 | top1 | 1 | 0.04 | 9.9e-02 | -7.83 | -7.8 | 4.8e-15 | 0.87 | 0.06 | 0.06 | FALSE |
57 | IL | Pcsk2 | gene expression | ENSRNOG00000005438 | 0.49 | 0.21 | top1 | 1 | 0.21 | 7.5e-06 | 9.02 | 9.0 | 1.9e-19 | -0.96 | 0.11 | 0.11 | FALSE |
58 | IL | Dstn | gene expression | ENSRNOG00000005924 | 0.79 | 0.38 | blup | 1574 | 0.39 | 2.0e-10 | -8.67 | 8.5 | 1.8e-17 | -0.98 | 0.46 | 0.54 | FALSE |
59 | IL | Sec23b | gene expression | ENSRNOG00000008411 | 0.90 | 0.47 | blup | 1823 | 0.50 | 7.8e-14 | 6.57 | 5.2 | 2.2e-07 | -0.59 | 0.95 | 0.05 | TRUE |
60 | IL | NA | gene expression | ENSRNOG00000067833 | 0.33 | 0.10 | enet | 9 | 0.13 | 5.9e-04 | 1.05 | 6.8 | 8.0e-12 | -0.65 | 0.65 | 0.08 | TRUE |
61 | IL | Dzank1 | intron excision ratio | chr3:131906549:131908083 | 0.18 | 0.10 | top1 | 1 | 0.10 | 2.0e-03 | -6.46 | 6.5 | 1.0e-10 | -0.86 | 0.09 | 0.05 | FALSE |
62 | IL | Sec23b | intron excision ratio | chr3:131955920:131958981 | 0.39 | 0.27 | top1 | 1 | 0.27 | 4.2e-07 | 6.69 | 6.7 | 2.2e-11 | -0.74 | 0.30 | 0.04 | FALSE |
63 | IL | Dstn | mRNA stability | ENSRNOG00000005924 | 0.54 | 0.27 | blup | 1574 | 0.34 | 4.2e-09 | -8.80 | 7.7 | 1.2e-14 | -0.93 | 0.48 | 0.52 | FALSE |
64 | LHb | Snrpb2 | gene expression | ENSRNOG00000004967 | 0.24 | 0.15 | top1 | 1 | 0.15 | 2.3e-04 | 9.09 | 9.1 | 9.9e-20 | -0.93 | 0.10 | 0.07 | FALSE |
65 | LHb | Dstn | gene expression | ENSRNOG00000005924 | 0.80 | 0.49 | enet | 8 | 0.50 | 1.3e-13 | -7.84 | 8.3 | 9.4e-17 | -0.99 | 0.57 | 0.43 | FALSE |
66 | LHb | Rrbp1 | gene expression | ENSRNOG00000005958 | 0.22 | 0.21 | top1 | 1 | 0.21 | 1.0e-05 | -8.89 | -8.9 | 6.2e-19 | 0.95 | 0.09 | 0.06 | FALSE |
67 | LHb | Dzank1 | gene expression | ENSRNOG00000007440 | 0.14 | 0.02 | blup | 1804 | 0.04 | 4.6e-02 | -5.21 | -6.8 | 1.4e-11 | 0.86 | 0.27 | 0.40 | FALSE |
68 | LHb | Sec23b | gene expression | ENSRNOG00000008411 | 0.79 | 0.45 | enet | 17 | 0.53 | 6.5e-15 | -4.91 | 6.3 | 2.6e-10 | -0.72 | 0.94 | 0.06 | FALSE |
69 | LHb | Zfp133 | gene expression | ENSRNOG00000027955 | 0.19 | 0.03 | top1 | 1 | 0.03 | 6.1e-02 | 6.67 | -6.7 | 2.5e-11 | 0.82 | 0.09 | 0.05 | FALSE |
70 | LHb | Otor | gene expression | ENSRNOG00000028721 | 0.26 | -0.01 | lasso | 5 | 0.01 | 1.7e-01 | 8.61 | -8.9 | 3.7e-19 | 0.80 | 0.43 | 0.21 | FALSE |
71 | LHb | Sec23b | intron excision ratio | chr3:131955920:131958981 | 0.33 | 0.16 | blup | 1822 | 0.17 | 6.8e-05 | 6.70 | 6.3 | 2.5e-10 | -0.77 | 0.60 | 0.38 | FALSE |
72 | LHb | Kif16b | mRNA stability | ENSRNOG00000004951 | 0.11 | 0.01 | enet | 6 | 0.03 | 7.3e-02 | 8.60 | -8.6 | 5.4e-18 | 0.71 | 0.43 | 0.33 | FALSE |
73 | LHb | Dstn | mRNA stability | ENSRNOG00000005924 | 0.39 | 0.37 | top1 | 1 | 0.37 | 8.7e-10 | -7.57 | 7.6 | 3.7e-14 | -0.98 | 0.50 | 0.03 | FALSE |
74 | LHb | Sec23b | mRNA stability | ENSRNOG00000008411 | 0.57 | 0.37 | blup | 1822 | 0.40 | 1.6e-10 | 6.69 | 6.4 | 1.2e-10 | -0.77 | 0.71 | 0.29 | FALSE |
75 | Liver | Kif16b | alternative polyA | ENSRNOT00000036273 | 0.18 | 0.14 | top1 | 1 | 0.14 | 6.7e-15 | 8.71 | -8.7 | 3.1e-18 | 0.91 | 0.89 | 0.11 | FALSE |
76 | Liver | Kif16b | alternative polyA | ENSRNOT00000118037 | 0.18 | 0.14 | top1 | 1 | 0.14 | 1.3e-15 | 8.68 | 8.7 | 3.9e-18 | -0.91 | 0.91 | 0.09 | FALSE |
77 | Liver | Rrbp1 | alternative polyA | ENSRNOT00000055602 | 0.04 | 0.00 | blup | 1596 | 0.01 | 3.5e-02 | 0.39 | -5.7 | 1.4e-08 | 0.75 | 0.47 | 0.24 | FALSE |
78 | Liver | Rrbp1 | alternative polyA | ENSRNOT00000101060 | 0.05 | 0.00 | blup | 1596 | 0.02 | 5.4e-03 | 0.39 | 5.5 | 4.7e-08 | -0.72 | 0.61 | 0.23 | FALSE |
79 | Liver | Kif16b | gene expression | ENSRNOG00000004951 | 0.21 | 0.17 | lasso | 12 | 0.18 | 3.7e-19 | 9.00 | -8.7 | 3.7e-18 | 0.92 | 0.37 | 0.63 | FALSE |
80 | Liver | Dstn | gene expression | ENSRNOG00000005924 | 0.67 | 0.52 | blup | 1575 | 0.53 | 2.6e-69 | -8.67 | 7.9 | 2.0e-15 | -0.95 | 0.88 | 0.12 | FALSE |
81 | Liver | Kat14 | gene expression | ENSRNOG00000007160 | 0.05 | 0.02 | enet | 37 | 0.04 | 3.9e-05 | 6.11 | -7.8 | 5.5e-15 | 0.70 | 0.91 | 0.03 | FALSE |
82 | Liver | Dzank1 | gene expression | ENSRNOG00000007440 | 0.03 | 0.01 | blup | 1806 | 0.01 | 3.1e-02 | 6.11 | 5.9 | 3.1e-09 | -0.72 | 0.34 | 0.10 | FALSE |
83 | Liver | Rbbp9 | gene expression | ENSRNOG00000007972 | 0.12 | 0.07 | enet | 9 | 0.08 | 2.9e-09 | -6.56 | 6.3 | 3.3e-10 | -0.80 | 0.77 | 0.23 | FALSE |
84 | Liver | Sec23b | gene expression | ENSRNOG00000008411 | 0.09 | 0.04 | blup | 1824 | 0.05 | 5.2e-06 | -6.92 | 6.5 | 5.9e-11 | -0.85 | 0.33 | 0.67 | FALSE |
85 | Liver | Dtd1 | gene expression | ENSRNOG00000008746 | 0.20 | 0.08 | blup | 1829 | 0.09 | 1.2e-10 | 6.68 | 7.0 | 2.3e-12 | -0.86 | 0.49 | 0.51 | FALSE |
86 | Liver | Smim26 | gene expression | ENSRNOG00000036971 | 0.09 | 0.04 | blup | 1823 | 0.04 | 1.5e-05 | -6.56 | 6.1 | 8.3e-10 | -0.81 | 0.33 | 0.66 | FALSE |
87 | Liver | Kif16b | isoform ratio | ENSRNOT00000083061 | 0.06 | 0.04 | top1 | 1 | 0.04 | 4.7e-05 | 8.96 | -9.0 | 3.2e-19 | 0.91 | 0.28 | 0.31 | FALSE |
88 | Liver | Kif16b | isoform ratio | ENSRNOT00000118037 | 0.15 | 0.13 | blup | 2140 | 0.13 | 4.0e-14 | 9.03 | 8.6 | 7.1e-18 | -0.91 | 0.54 | 0.46 | FALSE |
89 | Liver | Rrbp1 | isoform ratio | ENSRNOT00000101060 | 0.04 | 0.00 | blup | 1596 | 0.01 | 3.3e-02 | -8.60 | 5.7 | 1.2e-08 | -0.74 | 0.45 | 0.24 | FALSE |
90 | Liver | Mgme1 | isoform ratio | ENSRNOT00000038865 | 0.03 | 0.02 | top1 | 1 | 0.02 | 4.0e-03 | 8.18 | -8.2 | 2.7e-16 | 0.76 | 0.05 | 0.03 | FALSE |
91 | Liver | Mgme1 | isoform ratio | ENSRNOT00000098696 | 0.03 | 0.02 | top1 | 1 | 0.02 | 3.2e-03 | 8.18 | 8.2 | 2.7e-16 | -0.76 | 0.05 | 0.03 | FALSE |
92 | Liver | Kif16b | intron excision ratio | chr3:129976371:129996958 | 0.03 | 0.01 | blup | 2140 | 0.01 | 2.4e-02 | 6.80 | -8.1 | 5.4e-16 | 0.74 | 0.36 | 0.08 | FALSE |
93 | Liver | Kif16b | intron excision ratio | chr3:130221648:130253917 | 0.05 | 0.02 | blup | 2140 | 0.03 | 4.0e-04 | 3.16 | 6.0 | 2.6e-09 | -0.79 | 0.68 | 0.25 | FALSE |
94 | Liver | Snrpb2 | intron excision ratio | chr3:130399307:130400989 | 0.04 | 0.03 | top1 | 1 | 0.03 | 3.5e-04 | -8.70 | 8.7 | 3.3e-18 | -0.93 | 0.25 | 0.04 | FALSE |
95 | Liver | Snrpb2 | intron excision ratio | chr3:130399832:130400989 | 0.06 | 0.03 | blup | 1963 | 0.03 | 2.4e-04 | -8.70 | -9.0 | 3.4e-19 | 0.95 | 0.46 | 0.54 | FALSE |
96 | Liver | Rbbp9 | intron excision ratio | chr3:131927367:131929585 | 0.29 | 0.20 | enet | 91 | 0.21 | 2.3e-22 | -7.04 | 6.8 | 1.3e-11 | -0.86 | 0.70 | 0.30 | FALSE |
97 | Liver | Rbbp9 | intron excision ratio | chr3:131929308:131929585 | 0.29 | 0.20 | lasso | 25 | 0.20 | 9.7e-22 | -7.04 | -6.7 | 1.5e-11 | 0.85 | 0.68 | 0.32 | FALSE |
98 | Liver | Kif16b | mRNA stability | ENSRNOG00000004951 | 0.13 | 0.06 | enet | 30 | 0.06 | 1.2e-07 | 6.51 | -6.5 | 6.6e-11 | 0.52 | 0.97 | 0.03 | FALSE |
99 | Liver | Dstn | mRNA stability | ENSRNOG00000005924 | 0.67 | 0.50 | blup | 1575 | 0.50 | 1.1e-63 | -7.47 | 7.8 | 7.5e-15 | -0.94 | 0.95 | 0.05 | FALSE |
100 | Liver | Polr3f | mRNA stability | ENSRNOG00000007548 | 0.25 | 0.21 | blup | 1804 | 0.22 | 1.0e-23 | 7.16 | 6.5 | 1.1e-10 | -0.78 | 0.93 | 0.07 | FALSE |
101 | Liver | Rbbp9 | mRNA stability | ENSRNOG00000007972 | 0.04 | 0.01 | blup | 1818 | 0.01 | 8.2e-03 | -5.43 | 7.0 | 2.7e-12 | -0.88 | 0.32 | 0.62 | FALSE |
102 | NAcc | Pcsk2 | gene expression | ENSRNOG00000005438 | 0.73 | 0.27 | lasso | 2 | 0.34 | 2.6e-08 | -8.88 | 8.9 | 6.4e-19 | -0.99 | 0.52 | 0.47 | FALSE |
103 | NAcc | Dstn | gene expression | ENSRNOG00000005924 | 0.74 | 0.38 | lasso | 4 | 0.48 | 2.7e-12 | -8.67 | 8.6 | 5.5e-18 | -0.92 | 0.59 | 0.41 | FALSE |
104 | NAcc | Sec23b | gene expression | ENSRNOG00000008411 | 0.76 | 0.59 | top1 | 1 | 0.59 | 4.7e-16 | 6.70 | 6.7 | 2.1e-11 | -0.75 | 0.98 | 0.01 | FALSE |
105 | NAcc | Scp2d1 | gene expression | ENSRNOG00000009461 | 0.62 | 0.33 | enet | 23 | 0.35 | 9.5e-09 | -5.37 | -5.6 | 1.9e-08 | 0.67 | 0.62 | 0.36 | FALSE |
106 | NAcc | Sec23b | intron excision ratio | chr3:131955920:131958981 | 0.65 | 0.16 | enet | 36 | 0.21 | 1.9e-05 | -5.36 | 5.6 | 2.0e-08 | -0.54 | 0.77 | 0.19 | FALSE |
107 | NAcc | Pcsk2 | mRNA stability | ENSRNOG00000005438 | 0.28 | 0.14 | top1 | 1 | 0.14 | 4.4e-04 | -9.00 | 9.0 | 2.3e-19 | -0.98 | 0.08 | 0.06 | FALSE |
108 | NAcc | Dstn | mRNA stability | ENSRNOG00000005924 | 0.64 | 0.46 | top1 | 1 | 0.46 | 1.3e-11 | -9.00 | 9.0 | 2.3e-19 | -0.98 | 0.31 | 0.63 | FALSE |
109 | NAcc | Sec23b | mRNA stability | ENSRNOG00000008411 | 0.54 | 0.37 | top1 | 1 | 0.37 | 4.0e-09 | 6.64 | 6.6 | 3.2e-11 | -0.69 | 0.57 | 0.03 | FALSE |
110 | NAcc2 | Kif16b | gene expression | ENSRNOG00000004951 | 0.11 | 0.01 | blup | 2128 | 0.04 | 3.1e-03 | -7.40 | 9.0 | 2.3e-19 | -0.81 | 0.46 | 0.35 | FALSE |
111 | NAcc2 | Pcsk2 | gene expression | ENSRNOG00000005438 | 0.14 | 0.02 | lasso | 2 | 0.04 | 5.2e-03 | 8.89 | 7.8 | 4.9e-15 | -0.86 | 0.70 | 0.25 | FALSE |
112 | NAcc2 | Dstn | gene expression | ENSRNOG00000005924 | 0.88 | 0.63 | enet | 174 | 0.65 | 3.3e-45 | -7.47 | 7.9 | 2.2e-15 | -0.93 | 0.91 | 0.09 | FALSE |
113 | NAcc2 | Rrbp1 | gene expression | ENSRNOG00000005958 | 0.18 | 0.11 | lasso | 31 | 0.12 | 4.9e-07 | 8.63 | -8.5 | 2.2e-17 | 0.94 | 0.56 | 0.44 | FALSE |
114 | NAcc2 | Dzank1 | gene expression | ENSRNOG00000007440 | 0.09 | 0.05 | blup | 1807 | 0.06 | 3.0e-04 | -6.52 | -6.6 | 5.6e-11 | 0.85 | 0.53 | 0.41 | FALSE |
115 | NAcc2 | Sec23b | gene expression | ENSRNOG00000008411 | 0.86 | 0.74 | enet | 154 | 0.74 | 8.5e-58 | 6.60 | 6.7 | 2.5e-11 | -0.82 | 0.99 | 0.01 | FALSE |
116 | NAcc2 | Dtd1 | gene expression | ENSRNOG00000008746 | 0.26 | 0.20 | top1 | 1 | 0.20 | 5.9e-11 | -6.98 | 7.0 | 3.0e-12 | -0.86 | 0.79 | 0.21 | FALSE |
117 | NAcc2 | Scp2d1 | gene expression | ENSRNOG00000009461 | 0.23 | 0.19 | top1 | 1 | 0.19 | 1.9e-10 | -5.43 | -5.4 | 5.6e-08 | 0.79 | 1.00 | 0.00 | FALSE |
118 | NAcc2 | NA | gene expression | ENSRNOG00000067833 | 0.12 | 0.07 | enet | 23 | 0.08 | 3.1e-05 | -5.14 | 5.5 | 4.3e-08 | -0.60 | 0.75 | 0.14 | FALSE |
119 | NAcc2 | Snrpb2 | intron excision ratio | chr3:130399307:130400989 | 0.15 | 0.02 | top1 | 1 | 0.02 | 1.8e-02 | 6.51 | 6.5 | 7.3e-11 | -0.91 | 0.09 | 0.04 | FALSE |
120 | NAcc2 | Rrbp1 | intron excision ratio | chr3:131318178:131319923 | 0.05 | 0.04 | top1 | 1 | 0.04 | 4.6e-03 | 8.39 | -8.4 | 4.9e-17 | 0.91 | 0.06 | 0.04 | FALSE |
121 | NAcc2 | Rbbp9 | intron excision ratio | chr3:131927367:131929585 | 0.15 | 0.03 | top1 | 1 | 0.03 | 5.9e-03 | -6.97 | 7.0 | 3.1e-12 | -0.86 | 0.10 | 0.04 | FALSE |
122 | NAcc2 | Rbbp9 | intron excision ratio | chr3:131929308:131929585 | 0.14 | 0.04 | top1 | 1 | 0.04 | 5.0e-03 | -6.97 | -7.0 | 3.1e-12 | 0.85 | 0.09 | 0.04 | FALSE |
123 | NAcc2 | Sec23b | intron excision ratio | chr3:131955920:131958981 | 0.16 | 0.11 | lasso | 13 | 0.12 | 5.0e-07 | 6.43 | 6.1 | 1.3e-09 | 0.77 | 0.98 | 0.02 | FALSE |
124 | NAcc2 | Dstn | mRNA stability | ENSRNOG00000005924 | 0.58 | 0.41 | top1 | 1 | 0.41 | 1.0e-23 | -7.47 | 7.5 | 8.1e-14 | -0.98 | 1.00 | 0.00 | FALSE |
125 | NAcc2 | Sec23b | mRNA stability | ENSRNOG00000008411 | 0.41 | 0.33 | enet | 23 | 0.36 | 2.0e-20 | 6.68 | 6.8 | 1.2e-11 | -0.84 | 0.95 | 0.05 | FALSE |
126 | OFC | Pcsk2 | gene expression | ENSRNOG00000005438 | 0.62 | 0.36 | lasso | 9 | 0.38 | 5.0e-10 | 7.36 | 7.4 | 1.5e-13 | 0.62 | 0.66 | 0.34 | FALSE |
127 | OFC | Dstn | gene expression | ENSRNOG00000005924 | 0.82 | 0.49 | enet | 41 | 0.52 | 1.4e-14 | -7.84 | 7.7 | 1.8e-14 | -0.96 | 0.57 | 0.43 | FALSE |
128 | OFC | Sec23b | gene expression | ENSRNOG00000008411 | 0.76 | 0.57 | enet | 9 | 0.61 | 4.0e-18 | 6.70 | 6.0 | 1.8e-09 | -0.64 | 0.96 | 0.04 | FALSE |
129 | OFC | Scp2d1 | gene expression | ENSRNOG00000009461 | 0.55 | 0.11 | blup | 1917 | 0.15 | 2.5e-04 | -5.34 | -5.8 | 6.8e-09 | 0.73 | 0.51 | 0.43 | FALSE |
130 | OFC | Sec23b | intron excision ratio | chr3:131955920:131958981 | 0.53 | 0.23 | lasso | 6 | 0.25 | 1.3e-06 | 6.60 | 5.4 | 5.4e-08 | -0.62 | 0.91 | 0.06 | FALSE |
131 | OFC | Dstn | mRNA stability | ENSRNOG00000005924 | 0.29 | 0.16 | blup | 1574 | 0.19 | 3.1e-05 | -7.57 | 8.3 | 1.5e-16 | -0.97 | 0.49 | 0.49 | FALSE |
132 | OFC | Sec23b | mRNA stability | ENSRNOG00000008411 | 0.59 | 0.42 | top1 | 1 | 0.42 | 3.9e-11 | 7.12 | 7.1 | 1.1e-12 | -0.71 | 0.72 | 0.17 | FALSE |
133 | PL | Pcsk2 | gene expression | ENSRNOG00000005438 | 0.32 | 0.13 | blup | 1458 | 0.15 | 2.4e-04 | 9.09 | 8.9 | 4.1e-19 | -0.95 | 0.55 | 0.42 | FALSE |
134 | PL | Dstn | gene expression | ENSRNOG00000005924 | 0.80 | 0.37 | top1 | 1 | 0.37 | 1.0e-09 | -7.54 | 7.5 | 4.5e-14 | -0.98 | 0.78 | 0.01 | FALSE |
135 | PL | Sec23b | gene expression | ENSRNOG00000008411 | 0.76 | 0.43 | blup | 1823 | 0.45 | 5.1e-12 | 6.70 | 5.4 | 7.3e-08 | -0.65 | 0.92 | 0.08 | FALSE |
136 | PL | Dtd1 | gene expression | ENSRNOG00000008746 | 0.26 | 0.04 | lasso | 14 | 0.04 | 3.4e-02 | -7.54 | 6.5 | 8.5e-11 | -0.91 | 0.19 | 0.58 | FALSE |
137 | PL | Sec23b | intron excision ratio | chr3:131955920:131958981 | 0.65 | 0.36 | lasso | 7 | 0.36 | 1.7e-09 | 6.69 | 6.4 | 1.3e-10 | -0.77 | 0.90 | 0.10 | FALSE |
138 | PL | Dstn | mRNA stability | ENSRNOG00000005924 | 0.57 | 0.38 | lasso | 5 | 0.39 | 3.6e-10 | -7.54 | 7.6 | 3.5e-14 | -0.94 | 0.66 | 0.34 | FALSE |
139 | PL | Sec23b | mRNA stability | ENSRNOG00000008411 | 0.57 | 0.53 | enet | 13 | 0.54 | 4.2e-15 | -4.88 | 5.6 | 2.8e-08 | -0.70 | 0.96 | 0.04 | FALSE |
140 | PL | Dtd1 | mRNA stability | ENSRNOG00000008746 | 0.25 | 0.11 | enet | 15 | 0.18 | 6.0e-05 | 6.69 | 6.4 | 2.0e-10 | -0.83 | 0.66 | 0.24 | FALSE |
141 | PL2 | Snrpb2 | gene expression | ENSRNOG00000004967 | 0.12 | 0.06 | blup | 1951 | 0.07 | 1.8e-04 | 8.79 | 8.6 | 7.7e-18 | -0.93 | 0.62 | 0.38 | FALSE |
142 | PL2 | Pcsk2 | gene expression | ENSRNOG00000005438 | 0.24 | 0.17 | enet | 71 | 0.18 | 4.2e-10 | -9.14 | 9.3 | 2.1e-20 | -0.90 | 0.54 | 0.46 | TRUE |
143 | PL2 | Dstn | gene expression | ENSRNOG00000005924 | 0.89 | 0.61 | enet | 276 | 0.63 | 4.2e-43 | -7.98 | 8.3 | 1.2e-16 | -0.96 | 0.80 | 0.20 | FALSE |
144 | PL2 | Sec23b | gene expression | ENSRNOG00000008411 | 0.82 | 0.62 | lasso | 18 | 0.67 | 1.4e-47 | 6.57 | 6.6 | 3.9e-11 | -0.82 | 0.98 | 0.02 | FALSE |
145 | PL2 | Dtd1 | gene expression | ENSRNOG00000008746 | 0.15 | 0.11 | top1 | 1 | 0.11 | 1.1e-06 | 6.63 | 6.6 | 3.3e-11 | -0.84 | 0.73 | 0.03 | FALSE |
146 | PL2 | Zfp133 | gene expression | ENSRNOG00000027955 | 0.15 | 0.10 | top1 | 1 | 0.10 | 3.8e-06 | -6.97 | -7.0 | 3.1e-12 | 0.90 | 0.40 | 0.04 | FALSE |
147 | PL2 | Otor | gene expression | ENSRNOG00000028721 | 0.09 | 0.06 | blup | 1960 | 0.07 | 9.4e-05 | 8.79 | -8.9 | 4.7e-19 | 0.94 | 0.57 | 0.42 | FALSE |
148 | PL2 | Smim26 | gene expression | ENSRNOG00000036971 | 0.16 | 0.02 | enet | 18 | 0.03 | 9.4e-03 | 6.46 | 5.4 | 5.0e-08 | 0.36 | 0.33 | 0.38 | FALSE |
149 | PL2 | Mgme1 | isoform ratio | ENSRNOT00000038865 | 0.42 | 0.02 | lasso | 1 | 0.03 | 9.7e-03 | -5.43 | 5.4 | 5.6e-08 | -0.49 | 0.31 | 0.23 | FALSE |
150 | PL2 | Mgme1 | isoform ratio | ENSRNOT00000098696 | 0.38 | 0.01 | lasso | 11 | 0.02 | 2.1e-02 | -5.43 | -5.4 | 5.6e-08 | 0.58 | 0.28 | 0.23 | FALSE |
151 | PL2 | Dzank1 | intron excision ratio | chr3:131906549:131907051 | 0.25 | 0.10 | lasso | 39 | 0.13 | 2.5e-07 | 7.11 | -5.4 | 5.9e-08 | 0.64 | 0.85 | 0.14 | FALSE |
152 | PL2 | Rbbp9 | intron excision ratio | chr3:131927367:131929585 | 0.13 | 0.02 | enet | 2 | 0.11 | 2.2e-06 | 1.12 | 5.1 | 3.0e-07 | -0.40 | 0.91 | 0.03 | FALSE |
153 | PL2 | Rbbp9 | intron excision ratio | chr3:131929308:131929585 | 0.13 | 0.03 | enet | 2 | 0.11 | 1.5e-06 | 1.12 | -5.2 | 2.5e-07 | 0.38 | 0.92 | 0.03 | FALSE |
154 | PL2 | Rbbp9 | intron excision ratio | chr3:131929690:131931999 | 0.08 | 0.03 | enet | 14 | 0.04 | 2.3e-03 | -6.97 | -6.9 | 4.6e-12 | 0.86 | 0.42 | 0.52 | FALSE |
155 | PL2 | Sec23b | intron excision ratio | chr3:131955920:131958981 | 0.11 | 0.05 | enet | 13 | 0.06 | 3.4e-04 | -4.84 | 6.7 | 2.5e-11 | -0.87 | 0.63 | 0.35 | FALSE |
156 | PL2 | Kif16b | mRNA stability | ENSRNOG00000004951 | 0.17 | 0.08 | top1 | 1 | 0.08 | 3.2e-05 | 6.89 | -6.9 | 5.6e-12 | 0.84 | 0.13 | 0.04 | FALSE |
157 | PL2 | Snrpb2 | mRNA stability | ENSRNOG00000004967 | 0.06 | 0.02 | lasso | 7 | 0.02 | 2.0e-02 | 3.37 | 5.6 | 2.1e-08 | -0.72 | 0.43 | 0.22 | FALSE |
158 | PL2 | Pcsk2 | mRNA stability | ENSRNOG00000005438 | 0.08 | 0.04 | top1 | 1 | 0.04 | 3.1e-03 | -9.09 | -9.1 | 1.0e-19 | 0.98 | 0.07 | 0.07 | FALSE |
159 | PL2 | Dstn | mRNA stability | ENSRNOG00000005924 | 0.79 | 0.39 | enet | 11 | 0.40 | 4.7e-23 | -8.14 | 8.1 | 7.5e-16 | -0.93 | 0.89 | 0.11 | FALSE |
160 | PL2 | Sec23b | mRNA stability | ENSRNOG00000008411 | 0.42 | 0.30 | lasso | 30 | 0.34 | 2.8e-19 | 7.12 | 6.9 | 6.7e-12 | -0.82 | 0.94 | 0.06 | FALSE |
h2: Heritability estimate for the given transcriptomic model. PP3: Posterior probability of two distinct causal variants. PP4: Posterior probability of a single shared causal variant. joint: Whether the RNA phenotype is in the joint model.