Best TWAS P=1.54e-09 · Best GWAS P=8.06e-07 conditioned to 3.41e-01
Tissue | Gene | RNA modality | RNA phenotype | h2 | # weights | Model R2 | Model R2 P | TWAS Z | TWAS P | Coloc P | Joint |
---|---|---|---|---|---|---|---|---|---|---|---|
Adipose | LOC103692619 | gene expression | LOC103692619 | 0.08 | 11 | 0.03 | 9.8e-05 | 5.26 | 1.40e-07 | 0.13 | FALSE |
Brain | Pnpla8 | gene expression | Pnpla8 | 0.1 | 2580 | 0.07 | 8.8e-07 | 5.68 | 1.37e-08 | 0.63 | FALSE |
NAcc | Nrcam | alternative TSS | XM_017594269.2 | 0.05 | 2299 | 0.04 | 5.3e-05 | -5.25 | 1.56e-07 | 0.6 | FALSE |
NAcc | Dnajb9 | gene expression | Dnajb9 | 0.08 | 2716 | 0.07 | 4.6e-08 | 5.48 | 4.20e-08 | 0.1 | FALSE |
PL | Dnajb9 | gene expression | Dnajb9 | 0.08 | 2716 | 0.03 | 4.7e-04 | 5.71 | 1.11e-08 | 0.09 | FALSE |
PL | Pnpla8 | gene expression | Pnpla8 | 0.24 | 29 | 0.06 | 4.0e-07 | -5.42 | 5.81e-08 | 0.1 | FALSE |
pVTA | Dnajb9 | gene expression | Dnajb9 | 0.37 | 2716 | 0.1 | 6.1e-05 | 6.04 | 1.54e-09 | 0.1 | TRUE |
pVTA | Nrcam | intron excision ratio | chr6_61670275_61682984 | 0.17 | 2299 | 0.09 | 9.5e-05 | 5.67 | 1.43e-08 | 0.51 | FALSE |