Best TWAS P=8.54e-15 · Best GWAS P=7.90e-15 conditioned to 1.00e+00
| Tissue | Gene | RNA modality | RNA phenotype | h2 | # weights | Model R2 | Model R2 P | TWAS Z | TWAS P | Coloc P | Joint |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Adipose | LOC102547047 | alternative polyA | XM_006247224.4 | 0.06 | 1 | 0.06 | 3.3e-07 | -5.34 | 9.19e-08 | 0.09 | FALSE |
| Adipose | LOC102550580 | alternative polyA | XR_005490722.1 | 0.06 | 1 | 0.07 | 7.7e-08 | 5.45 | 5.09e-08 | 0.13 | FALSE |
| Adipose | LOC102550580 | alternative polyA | XR_005490722.1 | 0.03 | 1 | 0.03 | 1.9e-04 | 5.45 | 5.09e-08 | 0.04 | FALSE |
| Adipose | Nfe2l1 | alternative polyA | NM_001108293.2 | 0.02 | 1038 | 0.02 | 2.4e-03 | 5.96 | 2.55e-09 | 0.34 | FALSE |
| Adipose | Nfe2l1 | alternative polyA | XM_039086388.1 | 0.03 | 1038 | 0.02 | 2.1e-03 | -5.96 | 2.58e-09 | 0.3 | FALSE |
| Adipose | Srcin1 | alternative polyA | NM_019378.2 | 0.08 | 66 | 0.04 | 8.9e-05 | -6.14 | 8.45e-10 | 0.48 | FALSE |
| Adipose | Srcin1 | alternative polyA | NM_001393741.1 | 0.06 | 13 | 0.03 | 2.4e-04 | 6.41 | 1.49e-10 | 0.46 | FALSE |
| Adipose | Srcin1 | alternative polyA | NM_019378.2 | 0.06 | 70 | 0.03 | 1.4e-04 | -5.72 | 1.07e-08 | 0.44 | FALSE |
| Adipose | Gngt2 | alternative TSS | XM_006247208.4 | 0.04 | 1 | 0.05 | 1.8e-06 | 5.37 | 7.87e-08 | 0.1 | FALSE |
| Adipose | B4galnt2 | gene expression | B4galnt2 | 0.03 | 1 | 0.03 | 2.7e-04 | -5.25 | 1.50e-07 | 0.03 | FALSE |
| Adipose | Cdk5rap3 | gene expression | Cdk5rap3 | 0.03 | 948 | 0.03 | 2.7e-04 | -5.27 | 1.37e-07 | 0.11 | FALSE |
| Adipose | Gngt2 | gene expression | Gngt2 | 0.07 | 1 | 0.08 | 2.3e-09 | -5.39 | 6.91e-08 | 0.11 | FALSE |
| Adipose | Hoxb2 | gene expression | Hoxb2 | 0.12 | 10 | 0.12 | 1.2e-13 | -5.38 | 7.44e-08 | 0.58 | FALSE |
| Adipose | Hoxb3 | gene expression | Hoxb3 | 0.11 | 21 | 0.08 | 6.7e-09 | 5.2 | 1.95e-07 | 0.32 | FALSE |
| Adipose | Hoxb9 | gene expression | Hoxb9 | 0.07 | 2 | 0.04 | 6.7e-05 | 5.39 | 6.90e-08 | 0.31 | FALSE |
| Adipose | LOC102547047 | gene expression | LOC102547047 | 0.05 | 1 | 0.06 | 6.1e-07 | -5.42 | 5.89e-08 | 0.13 | FALSE |
| Adipose | LOC102550580 | gene expression | LOC102550580 | 0.07 | 1 | 0.06 | 9.0e-08 | -5.71 | 1.16e-08 | 0.39 | FALSE |
| Adipose | Mrpl45 | gene expression | Mrpl45 | 0.6 | 48 | 0.45 | 7.0e-56 | -7.65 | 2.08e-14 | 0.85 | TRUE |
| Adipose | Phb1 | gene expression | Phb1 | 0.04 | 1 | 0.03 | 4.9e-04 | -5.64 | 1.72e-08 | 0.28 | FALSE |
| Adipose | Pip4k2b | gene expression | Pip4k2b | 0.25 | 995 | 0.04 | 7.7e-05 | -6.48 | 9.35e-11 | 0.71 | FALSE |
| Adipose | Sp2 | gene expression | Sp2 | 0.02 | 890 | 0.02 | 2.8e-03 | -5.42 | 6.00e-08 | 0.19 | FALSE |
| Adipose | Gngt2 | isoform ratio | XM_006247208.4 | 0.06 | 1 | 0.07 | 6.3e-08 | 5.38 | 7.60e-08 | 0.1 | FALSE |
| Adipose | LOC102547047 | isoform ratio | XR_005490437.1 | 0.06 | 20 | 0.06 | 1.1e-07 | 5.38 | 7.51e-08 | 0.11 | FALSE |
| Adipose | LOC102547278 | isoform ratio | XR_005490752.1 | 0.07 | 900 | 0.12 | 3.5e-13 | 5.78 | 7.44e-09 | 0.01 | FALSE |
| Adipose | LOC102550580 | isoform ratio | XR_005490722.1 | 0.06 | 1 | 0.06 | 9.8e-07 | 5.45 | 5.09e-08 | 0.13 | FALSE |
| Adipose | Nfe2l1 | isoform ratio | XM_039086388.1 | 0.02 | 1038 | 0.01 | 1.2e-02 | -5.69 | 1.27e-08 | 0.17 | FALSE |
| Adipose | Osbpl7 | isoform ratio | XM_006247300.4 | 0.02 | 1 | 0.01 | 3.4e-02 | -5.5 | 3.87e-08 | 0.03 | FALSE |
| Adipose | Zfp652 | isoform ratio | XM_039086630.1 | 0.04 | 1355 | 0.04 | 4.2e-05 | 5.51 | 3.52e-08 | 0.42 | FALSE |
| Adipose | LOC102550580 | intron excision ratio | chr10_81314588_81316216 | 0.02 | 1 | 0.02 | 1.0e-03 | -5.47 | 4.60e-08 | 0.03 | FALSE |
| Adipose | Osbpl7 | intron excision ratio | chr10_82036178_82037412 | 0.04 | 897 | 0.04 | 1.9e-05 | -6.05 | 1.45e-09 | 0.17 | FALSE |
| Adipose | Snf8 | intron excision ratio | chr10_80984820_80990408 | 0.02 | 1458 | 0.01 | 2.6e-02 | -5.2 | 2.03e-07 | 0.38 | FALSE |
| Adipose | B4galnt2 | mRNA stability | B4galnt2 | 0.16 | 1393 | 0.11 | 3.2e-12 | 6.74 | 1.53e-11 | 0.1 | FALSE |
| Adipose | Hoxb3 | mRNA stability | Hoxb3 | 0.06 | 1 | 0.02 | 2.6e-03 | -5.25 | 1.50e-07 | 0.03 | FALSE |
| Adipose | Npepps | mRNA stability | Npepps | 0.39 | 24 | 0.19 | 1.2e-20 | 7.73 | 1.04e-14 | 0.87 | FALSE |
| BLA | Skap1 | alternative TSS | XM_039085327.1 | 0.06 | 1 | 0.02 | 2.1e-02 | 5.67 | 1.42e-08 | 0.04 | FALSE |
| BLA | Skap1 | alternative TSS | XM_039085326.1 | 0.09 | 1166 | 0.05 | 7.2e-04 | 5.21 | 1.88e-07 | 0.19 | FALSE |
| BLA | Cbx1 | gene expression | Cbx1 | 0.07 | 16 | 0.07 | 1.5e-04 | -6.68 | 2.44e-11 | 0.31 | FALSE |
| BLA | Kpnb1 | gene expression | Kpnb1 | 0.13 | 1 | 0.06 | 2.2e-04 | 7.62 | 2.54e-14 | 0.17 | FALSE |
| BLA | LOC120095179 | gene expression | LOC120095179 | 0.8 | 30 | 0.62 | 4.4e-41 | 5.36 | 8.10e-08 | 0.41 | FALSE |
| BLA | Mrpl10 | gene expression | Mrpl10 | 0.23 | 23 | 0.21 | 2.5e-11 | -5.24 | 1.62e-07 | 0 | FALSE |
| BLA | Mrpl45 | gene expression | Mrpl45 | 0.75 | 40 | 0.63 | 1.2e-42 | -7.33 | 2.33e-13 | 0.85 | FALSE |
| BLA | Nfe2l1 | gene expression | Nfe2l1 | 0.51 | 27 | 0.6 | 8.4e-40 | -5.63 | 1.81e-08 | 0 | FALSE |
| BLA | Npepps | gene expression | Npepps | 0.45 | 1 | 0.17 | 1.3e-09 | 7.62 | 2.62e-14 | 0.85 | FALSE |
| BLA | Phospho1 | gene expression | Phospho1 | 0.07 | 1427 | 0.06 | 4.3e-04 | -5.96 | 2.56e-09 | 0.45 | FALSE |
| BLA | Pnpo | gene expression | Pnpo | 0.49 | 959 | 0.69 | 3.1e-50 | 5.53 | 3.19e-08 | 0 | FALSE |
| BLA | Scrn2 | gene expression | Scrn2 | 0.08 | 1 | 0.08 | 4.1e-05 | -5.44 | 5.38e-08 | 0.04 | FALSE |
| BLA | Skap1 | gene expression | Skap1 | 0.23 | 1166 | 0.25 | 2.2e-13 | -5.45 | 5.02e-08 | 0.37 | FALSE |
| BLA | LOC102547955 | isoform ratio | XR_005490736.1 | 0.14 | 1 | 0.08 | 5.1e-05 | -5.55 | 2.93e-08 | 0.04 | FALSE |
| BLA | Scrn2 | isoform ratio | XM_006247342.4 | 0.27 | 903 | 0.31 | 4.5e-17 | 5.23 | 1.68e-07 | 0 | FALSE |
| BLA | Snf8 | isoform ratio | NM_001007804.2 | 0.2 | 1458 | 0.14 | 4.9e-08 | -6.04 | 1.53e-09 | 0.38 | FALSE |
| BLA | LOC102547955 | intron excision ratio | chr10_81940032_81944450 | 0.14 | 120 | 0.15 | 2.9e-08 | -5.74 | 9.40e-09 | 0.01 | FALSE |
| BLA | Osbpl7 | intron excision ratio | chr10_82036178_82036809 | 0.17 | 897 | 0.2 | 1.0e-10 | 5.78 | 7.29e-09 | 0 | FALSE |
| BLA | Srcin1 | intron excision ratio | chr10_82543491_82546225 | 0.11 | 900 | 0.06 | 4.3e-04 | -5.29 | 1.23e-07 | 0.02 | FALSE |
| BLA | Mrpl45 | mRNA stability | Mrpl45 | 0.32 | 109 | 0.14 | 6.1e-08 | 7.29 | 3.03e-13 | 0.86 | FALSE |
| BLA | Phospho1 | mRNA stability | Phospho1 | 0.07 | 1 | 0.07 | 1.1e-04 | 6.14 | 8.15e-10 | 0.22 | TRUE |
| BLA | Snf8 | mRNA stability | Snf8 | 0.09 | 1 | 0.04 | 2.3e-03 | -5.49 | 4.03e-08 | 0.04 | FALSE |
| Brain | Sp2 | alternative TSS | NM_001399622.1 | 0.03 | 1 | 0.04 | 2.0e-04 | -5.57 | 2.60e-08 | 0.03 | FALSE |
| Brain | Sp2 | alternative TSS | XM_039086079.1 | 0.02 | 890 | 0.02 | 7.0e-03 | 5.75 | 8.73e-09 | 0.25 | FALSE |
| Brain | Sp2 | alternative TSS | XM_039086080.1 | 0.02 | 890 | 0.02 | 5.9e-03 | -6.19 | 6.11e-10 | 0.46 | FALSE |
| Brain | Calcoco2 | gene expression | Calcoco2 | 0.09 | 1435 | 0.12 | 6.4e-11 | -5.64 | 1.72e-08 | 0.55 | FALSE |
| Brain | Kpnb1 | gene expression | Kpnb1 | 0.07 | 16 | 0.04 | 1.1e-04 | 7.67 | 1.65e-14 | 0.82 | FALSE |
| Brain | LOC120095180 | gene expression | LOC120095180 | 0.54 | 1 | 0.37 | 1.1e-35 | -5.36 | 8.11e-08 | 0.09 | FALSE |
| Brain | Mrpl45 | gene expression | Mrpl45 | 0.61 | 871 | 0.63 | 2.5e-75 | -7.6 | 2.93e-14 | 0.87 | FALSE |
| Brain | Nfe2l1 | gene expression | Nfe2l1 | 0.6 | 1038 | 0.73 | 2.0e-97 | 5.21 | 1.84e-07 | 0 | FALSE |
| Brain | Npepps | gene expression | Npepps | 0.35 | 4 | 0.21 | 2.1e-19 | -7.69 | 1.44e-14 | 0.88 | FALSE |
| Brain | Prr15l | gene expression | Prr15l | 0.03 | 1 | 0.02 | 1.1e-02 | 5.32 | 1.04e-07 | 0.03 | FALSE |
| Brain | Skap1 | gene expression | Skap1 | 0.06 | 1 | 0.07 | 2.0e-07 | 6.13 | 8.54e-10 | 0.89 | FALSE |
| Brain | Tbkbp1 | gene expression | Tbkbp1 | 0.16 | 1 | 0.08 | 3.9e-08 | -7.7 | 1.33e-14 | 0.92 | FALSE |
| Brain | Cdk5rap3 | isoform ratio | XM_039086923.1 | 0.02 | 948 | 0.02 | 4.2e-03 | 5.38 | 7.58e-08 | 0.11 | FALSE |
| Brain | Hoxb3 | isoform ratio | XM_039086075.1 | 0.02 | 1 | 0.02 | 3.1e-03 | -5.27 | 1.37e-07 | 0.03 | FALSE |
| Brain | Snf8 | isoform ratio | NM_001007804.2 | 0.05 | 1458 | 0.06 | 4.0e-06 | -5.19 | 2.09e-07 | 0.38 | FALSE |
| Brain | Mrpl45 | intron excision ratio | chr10_82310718_82313694 | 0.42 | 1 | 0.09 | 1.5e-08 | 7.61 | 2.65e-14 | 0.85 | FALSE |
| Brain | Osbpl7 | intron excision ratio | chr10_82036178_82037412 | 0.11 | 897 | 0.16 | 1.3e-14 | -5.47 | 4.52e-08 | 0 | FALSE |
| Brain | Osbpl7 | intron excision ratio | chr10_82036922_82037412 | 0.17 | 27 | 0.19 | 1.3e-17 | -5.95 | 2.68e-09 | 0 | FALSE |
| Brain | Cbx1 | mRNA stability | Cbx1 | 0.06 | 1 | 0.07 | 4.7e-07 | -5.46 | 4.72e-08 | 0 | FALSE |
| Brain | Npepps | mRNA stability | Npepps | 0.39 | 5 | 0.25 | 9.5e-23 | -7.73 | 1.05e-14 | 0.89 | FALSE |
| Brain | Pip4k2b | mRNA stability | Pip4k2b | 0.11 | 9 | 0.05 | 2.8e-05 | 7.62 | 2.46e-14 | 0.62 | FALSE |
| Brain | Tbkbp1 | mRNA stability | Tbkbp1 | 0.06 | 1 | 0.04 | 2.2e-04 | -7.6 | 2.92e-14 | 0.37 | FALSE |
| Eye | Cwc25 | gene expression | Cwc25 | 0.8 | 6 | -0 | 3.5e-01 | -6.56 | 5.42e-11 | 0.18 | TRUE |
| Eye | Gip | gene expression | Gip | 0.73 | 1 | 0.11 | 1.1e-02 | 5.5 | 3.84e-08 | 0.06 | FALSE |
| Eye | LOC120095179 | gene expression | LOC120095179 | 0.29 | 1 | 0 | 3.1e-01 | -5.63 | 1.85e-08 | 0.06 | FALSE |
| Eye | Scrn2 | isoform ratio | XM_017597394.2 | 0.66 | 1 | 0.14 | 3.9e-03 | 5.3 | 1.14e-07 | 0.06 | FALSE |
| Eye | Snx11 | isoform ratio | XR_005489853.1 | 0.69 | 1 | 0.07 | 3.3e-02 | -7.46 | 8.80e-14 | 0.06 | FALSE |
| Eye | Gngt2 | intron excision ratio | chr10_80782293_80783525 | 0.38 | 13 | 0.08 | 2.2e-02 | -5.24 | 1.61e-07 | 0.16 | TRUE |
| Eye | Gngt2 | intron excision ratio | chr10_80782293_80783530 | 0.31 | 13 | 0.06 | 5.0e-02 | 5.24 | 1.61e-07 | 0.14 | FALSE |
| Eye | Osbpl7 | intron excision ratio | chr10_82036178_82036809 | 0.36 | 1 | 0.06 | 4.8e-02 | -5.3 | 1.14e-07 | 0.06 | FALSE |
| IL | LOC120095179 | gene expression | LOC120095179 | 0.56 | 1 | 0.4 | 1.1e-10 | -5.26 | 1.45e-07 | 0.24 | FALSE |
| IL | Mrpl10 | gene expression | Mrpl10 | 0.44 | 894 | 0.18 | 4.2e-05 | -6.55 | 5.95e-11 | 0.54 | FALSE |
| IL | Mrpl45 | gene expression | Mrpl45 | 0.9 | 1 | 0.44 | 5.2e-12 | 7.46 | 8.80e-14 | 0.63 | FALSE |
| IL | Nfe2l1 | gene expression | Nfe2l1 | 0.72 | 1038 | 0.4 | 9.2e-11 | 5.75 | 8.70e-09 | 0.01 | FALSE |
| IL | Npepps | gene expression | Npepps | 0.34 | 15 | 0.08 | 6.8e-03 | 6.33 | 2.47e-10 | 0.51 | FALSE |
| IL | Pnpo | gene expression | Pnpo | 0.87 | 1 | 0.4 | 1.2e-10 | -5.2 | 2.03e-07 | 0.01 | FALSE |
| IL | Scrn2 | gene expression | Scrn2 | 0.36 | 903 | 0.07 | 9.4e-03 | 5.98 | 2.22e-09 | 0.33 | FALSE |
| IL | Skap1 | gene expression | Skap1 | 0.26 | 1166 | 0.1 | 2.1e-03 | -5.55 | 2.85e-08 | 0.42 | FALSE |
| IL | Mrpl45 | intron excision ratio | chr10_82310718_82313694 | 0.33 | 27 | 0.17 | 7.7e-05 | -7.38 | 1.54e-13 | 0.74 | FALSE |
| IL | Mrpl45 | intron excision ratio | chr10_82310797_82313694 | 0.34 | 28 | 0.18 | 4.8e-05 | 7.22 | 5.27e-13 | 0.74 | FALSE |
| IL | Cdk5rap3 | mRNA stability | Cdk5rap3 | 0.29 | 948 | 0.13 | 5.5e-04 | -5.53 | 3.24e-08 | 0.14 | FALSE |
| IL | Mrpl45 | mRNA stability | Mrpl45 | 0.21 | 1 | 0.11 | 1.5e-03 | 7.61 | 2.83e-14 | 0.07 | FALSE |
| IL | Phospho1 | mRNA stability | Phospho1 | 0.15 | 1 | 0.09 | 4.6e-03 | 5.45 | 5.09e-08 | 0.05 | FALSE |
| IL | Zfp652 | mRNA stability | Zfp652 | 0.29 | 1 | 0.23 | 3.6e-06 | 5.34 | 9.45e-08 | 0.08 | FALSE |
| LHb | Mrpl45 | gene expression | Mrpl45 | 0.82 | 29 | 0.47 | 1.0e-12 | -7.57 | 3.84e-14 | 0.87 | FALSE |
| LHb | Nfe2l1 | gene expression | Nfe2l1 | 0.54 | 118 | 0.34 | 5.3e-09 | -5.64 | 1.71e-08 | 0.01 | FALSE |
| LHb | Zfp652 | mRNA stability | Zfp652 | 0.36 | 1418 | 0.2 | 1.8e-05 | -6.04 | 1.56e-09 | 0.44 | FALSE |
| Liver | Cbx1 | alternative TSS | XM_006247233.4 | 0.04 | 1023 | 0.05 | 5.3e-06 | 5.28 | 1.29e-07 | 0.02 | FALSE |
| Liver | Cbx1 | alternative TSS | XM_006247233.4 | 0.03 | 1023 | 0.04 | 6.8e-05 | 5.22 | 1.76e-07 | 0.04 | FALSE |
| Liver | LOC102547047 | alternative TSS | XM_006247224.4 | 0.02 | 1427 | 0.03 | 3.2e-04 | 5.38 | 7.46e-08 | 0.6 | FALSE |
| Liver | Nfe2l1 | alternative TSS | NM_001372250.1 | 0.02 | 1 | 0.02 | 3.3e-03 | -5.73 | 1.00e-08 | 0.03 | FALSE |
| Liver | Phospho1 | alternative TSS | NM_001105833.1 | 0.03 | 1427 | 0.01 | 6.0e-02 | 6.93 | 4.17e-12 | 0.26 | FALSE |
| Liver | Scrn2 | alternative TSS | NM_001012142.1 | 0.07 | 903 | 0.09 | 6.3e-10 | 6.51 | 7.55e-11 | 0.5 | FALSE |
| Liver | Scrn2 | alternative TSS | XM_039086391.1 | 0.05 | 903 | 0.06 | 1.2e-07 | -6.41 | 1.42e-10 | 0.43 | FALSE |
| Liver | Scrn2 | alternative TSS | XM_017597394.2 | 0.74 | 73 | 0.62 | 3.8e-88 | -5.45 | 4.97e-08 | 0 | FALSE |
| Liver | Atp5mc1 | gene expression | Atp5mc1 | 0.31 | 1 | 0.41 | 1.3e-48 | 5.25 | 1.52e-07 | 0.05 | FALSE |
| Liver | Copz2 | gene expression | Copz2 | 0.04 | 41 | 0.05 | 7.8e-06 | 5.52 | 3.34e-08 | 0.06 | FALSE |
| Liver | Hoxb2 | gene expression | Hoxb2 | 0.12 | 7 | 0.04 | 2.6e-05 | 5.77 | 7.98e-09 | 0.61 | FALSE |
| Liver | Hoxb4 | gene expression | Hoxb4 | 0.02 | 1512 | 0.01 | 1.3e-02 | -5.62 | 1.91e-08 | 0.42 | FALSE |
| Liver | Kpnb1 | gene expression | Kpnb1 | 0.04 | 877 | 0.04 | 3.6e-05 | -6.15 | 7.66e-10 | 0.46 | FALSE |
| Liver | LOC120095180 | gene expression | LOC120095180 | 0.03 | 1402 | 0.01 | 2.2e-02 | -6.95 | 3.66e-12 | 0.27 | FALSE |
| Liver | Lrrc46 | gene expression | Lrrc46 | 0.05 | 897 | 0.04 | 1.7e-05 | -6.2 | 5.65e-10 | 0.3 | FALSE |
| Liver | Mrpl10 | gene expression | Mrpl10 | 0.03 | 894 | 0.02 | 3.0e-03 | -6.47 | 9.75e-11 | 0.63 | FALSE |
| Liver | Mrpl45 | gene expression | Mrpl45 | 0.68 | 286 | 0.6 | 2.4e-83 | 7.29 | 3.00e-13 | 0.86 | FALSE |
| Liver | Phospho1 | gene expression | Phospho1 | 0.53 | 78 | 0.64 | 5.4e-94 | 5.42 | 5.86e-08 | 0.1 | FALSE |
| Liver | Scrn2 | gene expression | Scrn2 | 0.35 | 903 | 0.58 | 1.4e-78 | 5.21 | 1.90e-07 | 0 | FALSE |
| Liver | Snf8 | gene expression | Snf8 | 0.04 | 1 | 0.05 | 4.0e-06 | -5.33 | 9.97e-08 | 0.51 | FALSE |
| Liver | Sp2 | gene expression | Sp2 | 0.05 | 15 | 0.08 | 1.3e-09 | 6.13 | 8.54e-10 | 0.05 | FALSE |
| Liver | Ube2z | gene expression | Ube2z | 0.04 | 1428 | 0.04 | 7.0e-05 | -6.01 | 1.91e-09 | 0.45 | FALSE |
| Liver | Atp5mc1 | isoform ratio | NM_017311.1 | 0.14 | 1 | 0.05 | 2.2e-06 | 5.82 | 5.77e-09 | 0.54 | FALSE |
| Liver | Atp5mc1 | isoform ratio | XM_006247188.4 | 0.1 | 1 | 0.06 | 8.4e-07 | -5.82 | 5.77e-09 | 0.55 | FALSE |
| Liver | Gngt2 | isoform ratio | NM_001135767.1 | 0.14 | 1 | 0.22 | 1.2e-23 | 5.49 | 4.05e-08 | 0.18 | FALSE |
| Liver | Gngt2 | isoform ratio | XM_039086880.1 | 0.17 | 12 | 0.29 | 6.0e-32 | 5.49 | 4.07e-08 | 0.1 | FALSE |
| Liver | Snf8 | isoform ratio | NM_001007804.2 | 0.13 | 21 | 0.16 | 1.1e-17 | 5.49 | 3.98e-08 | 0.49 | FALSE |
| Liver | Snf8 | isoform ratio | XM_039085602.1 | 0.13 | 1 | 0.17 | 6.3e-19 | -5.31 | 1.11e-07 | 0.06 | FALSE |
| Liver | Atp5mc1 | intron excision ratio | chr10_81026083_81026596 | 0.19 | 35 | 0.13 | 2.2e-14 | 5.39 | 7.18e-08 | 0.56 | FALSE |
| Liver | Atp5mc1 | intron excision ratio | chr10_81026083_81026666 | 0.16 | 1 | 0.14 | 5.6e-15 | -5.33 | 9.97e-08 | 0.07 | FALSE |
| Liver | Gngt2 | intron excision ratio | chr10_80781203_80782211 | 0.02 | 1 | 0.03 | 1.1e-04 | -5.37 | 7.87e-08 | 0.03 | FALSE |
| Liver | Gngt2 | intron excision ratio | chr10_80781744_80782211 | 0.03 | 1 | 0.06 | 9.6e-07 | 5.37 | 7.87e-08 | 0.08 | FALSE |
| Liver | Gngt2 | intron excision ratio | chr10_80782293_80783525 | 0.28 | 117 | 0.39 | 2.6e-46 | 5.36 | 8.40e-08 | 0.1 | FALSE |
| Liver | Gngt2 | intron excision ratio | chr10_80782293_80783530 | 0.28 | 95 | 0.39 | 2.4e-46 | -5.35 | 8.76e-08 | 0.1 | FALSE |
| Liver | Cbx1 | mRNA stability | Cbx1 | 0.03 | 1023 | 0.03 | 2.1e-04 | 5.74 | 9.45e-09 | 0.38 | FALSE |
| Liver | LOC102547955 | mRNA stability | LOC102547955 | 0.03 | 958 | 0.03 | 5.6e-04 | 5.18 | 2.17e-07 | 0.07 | FALSE |
| Liver | Npepps | mRNA stability | Npepps | 0.15 | 1 | 0.13 | 1.5e-14 | 7.6 | 3.01e-14 | 0.84 | FALSE |
| Liver | Phospho1 | mRNA stability | Phospho1 | 0.2 | 1427 | 0.17 | 5.2e-18 | 6.03 | 1.65e-09 | 0.1 | FALSE |
| Liver | Pnpo | mRNA stability | Pnpo | 0.06 | 959 | 0.04 | 4.1e-05 | -5.87 | 4.37e-09 | 0.6 | FALSE |
| Liver | Sp2 | mRNA stability | Sp2 | 0.06 | 18 | 0.1 | 1.1e-10 | 5.67 | 1.42e-08 | 0.01 | FALSE |
| Liver | Ube2z | mRNA stability | Ube2z | 0.03 | 1428 | 0.03 | 3.2e-04 | -5.59 | 2.30e-08 | 0.4 | FALSE |
| Liver | Zfp652 | mRNA stability | Zfp652 | 0.05 | 1 | 0.04 | 1.4e-05 | 5.38 | 7.52e-08 | 0.21 | FALSE |
| NAcc | Zfp652 | alternative polyA | XM_039086630.1 | 0.02 | 1 | 0.01 | 6.6e-03 | -5.42 | 5.88e-08 | 0.04 | FALSE |
| NAcc | Scrn2 | alternative TSS | XM_039086391.1 | 0.07 | 903 | 0.1 | 4.7e-12 | 5.24 | 1.57e-07 | 0 | FALSE |
| NAcc | Atp5mc1 | gene expression | Atp5mc1 | 0.03 | 1 | 0.03 | 2.9e-04 | 6.08 | 1.21e-09 | 0.27 | FALSE |
| NAcc | LOC102547955 | gene expression | LOC102547955 | 0.02 | 958 | 0.03 | 3.7e-04 | -5.28 | 1.29e-07 | 0.04 | TRUE |
| NAcc | LOC108352124 | gene expression | LOC108352124 | 0.06 | 3 | 0.07 | 9.7e-09 | -6.61 | 3.95e-11 | 0.25 | FALSE |
| NAcc | LOC120095180 | gene expression | LOC120095180 | 0.63 | 1402 | 0.48 | 4.8e-63 | 5.29 | 1.21e-07 | 0.09 | FALSE |
| NAcc | Lrrc46 | gene expression | Lrrc46 | 0.03 | 897 | 0.02 | 1.8e-03 | -6.1 | 1.05e-09 | 0.24 | FALSE |
| NAcc | Mrpl45 | gene expression | Mrpl45 | 0.72 | 79 | 0.75 | 2.3e-129 | 7.61 | 2.71e-14 | 0.85 | FALSE |
| NAcc | Npepps | gene expression | Npepps | 0.06 | 1 | 0.04 | 2.4e-05 | 7.57 | 3.80e-14 | 0.67 | FALSE |
| NAcc | Osbpl7 | gene expression | Osbpl7 | 0.07 | 897 | 0.09 | 6.0e-11 | 5.84 | 5.22e-09 | 0 | FALSE |
| NAcc | Skap1 | gene expression | Skap1 | 0.07 | 1166 | 0.09 | 6.0e-11 | -5.33 | 9.78e-08 | 0.13 | FALSE |
| NAcc | Tbkbp1 | gene expression | Tbkbp1 | 0.45 | 869 | 0.42 | 1.9e-52 | 7.6 | 3.03e-14 | 0.85 | FALSE |
| NAcc | LOC102547955 | isoform ratio | XR_005490750.1 | 0.04 | 958 | 0.04 | 3.3e-05 | -5.19 | 2.13e-07 | 0.01 | FALSE |
| NAcc | Pcgf2 | isoform ratio | NM_001105836.2 | 0.02 | 3 | 0.02 | 4.3e-03 | -6.24 | 4.42e-10 | 0.32 | FALSE |
| NAcc | Snf8 | isoform ratio | NM_001007804.2 | 0.03 | 1458 | 0.03 | 4.3e-04 | -5.45 | 5.06e-08 | 0.42 | FALSE |
| NAcc | Snf8 | isoform ratio | XM_039085602.1 | 0.06 | 1 | 0.09 | 1.3e-10 | -6.02 | 1.72e-09 | 0.8 | FALSE |
| NAcc | Gngt2 | intron excision ratio | chr10_80782293_80783525 | 0.12 | 5 | 0.04 | 8.8e-06 | -5.39 | 6.97e-08 | 0.15 | FALSE |
| NAcc | Mrpl45 | intron excision ratio | chr10_82310718_82313694 | 0.19 | 3 | 0.06 | 1.5e-07 | -7.74 | 1.01e-14 | 0.87 | FALSE |
| NAcc | Osbpl7 | intron excision ratio | chr10_82036178_82037412 | 0.08 | 897 | 0.11 | 9.6e-13 | -5.32 | 1.05e-07 | 0 | FALSE |
| NAcc | Skap1 | intron excision ratio | chr10_81452618_81493274 | 0.02 | 1 | 0.01 | 6.2e-03 | -5.53 | 3.24e-08 | 0.03 | FALSE |
| NAcc | Skap1 | intron excision ratio | chr10_81487270_81493274 | 0.02 | 1 | 0.01 | 9.8e-03 | 5.34 | 9.41e-08 | 0.03 | FALSE |
| NAcc | Mrpl45 | mRNA stability | Mrpl45 | 0.1 | 1 | 0.1 | 1.4e-11 | 7.62 | 2.55e-14 | 0.86 | FALSE |
| NAcc | Nfe2l1 | mRNA stability | Nfe2l1 | 0.02 | 1 | 0.01 | 2.3e-02 | 5.41 | 6.15e-08 | 0.03 | FALSE |
| OFC | Cwc25 | alternative polyA | NM_001108295.2 | 0.2 | 95 | 0.12 | 8.5e-04 | -5.68 | 1.38e-08 | 0.08 | FALSE |
| OFC | Cwc25 | alternative polyA | XM_039086393.1 | 0.19 | 6 | 0.1 | 2.4e-03 | 5.89 | 3.98e-09 | 0.09 | FALSE |
| OFC | Nfe2l1 | alternative TSS | NM_001372251.1 | 0.44 | 1 | 0.09 | 4.1e-03 | -7.57 | 3.80e-14 | 0.06 | FALSE |
| OFC | Kpnb1 | gene expression | Kpnb1 | 0.14 | 1 | 0.07 | 9.1e-03 | 5.33 | 9.97e-08 | 0.05 | FALSE |
| OFC | LOC120095180 | gene expression | LOC120095180 | 0.34 | 15 | 0.27 | 3.3e-07 | 5.24 | 1.61e-07 | 0.2 | FALSE |
| OFC | Mrpl10 | gene expression | Mrpl10 | 0.38 | 1 | 0.25 | 1.5e-06 | -5.3 | 1.14e-07 | 0.03 | FALSE |
| OFC | Mrpl45 | gene expression | Mrpl45 | 0.85 | 14 | 0.48 | 4.0e-13 | -7.51 | 5.76e-14 | 0.87 | FALSE |
| OFC | Npepps | gene expression | Npepps | 0.33 | 1 | 0.13 | 6.6e-04 | 7.56 | 4.16e-14 | 0.07 | FALSE |
| OFC | Pip4k2b | gene expression | Pip4k2b | 0.38 | 15 | 0.14 | 3.9e-04 | 6.4 | 1.56e-10 | 0.16 | FALSE |
| OFC | Skap1 | gene expression | Skap1 | 0.16 | 1 | 0.09 | 4.5e-03 | 5.63 | 1.85e-08 | 0.05 | FALSE |
| OFC | Mrpl45 | intron excision ratio | chr10_82310797_82313694 | 0.29 | 4 | 0.1 | 2.3e-03 | 7.61 | 2.66e-14 | 0.57 | FALSE |
| OFC | Srcin1 | intron excision ratio | chr10_82530709_82530945 | 0.22 | 900 | 0.08 | 7.3e-03 | 5.21 | 1.91e-07 | 0.09 | FALSE |
| PL | Scrn2 | alternative TSS | XM_039086392.1 | 0.05 | 903 | 0.02 | 1.5e-03 | 5.77 | 8.07e-09 | 0.47 | FALSE |
| PL | Skap1 | alternative TSS | XM_039085326.1 | 0.04 | 1166 | 0.04 | 9.7e-05 | 5.56 | 2.68e-08 | 0.53 | FALSE |
| PL | Skap1 | alternative TSS | XM_039085326.1 | 0.03 | 1166 | 0.02 | 1.8e-03 | 5.56 | 2.67e-08 | 0.55 | FALSE |
| PL | Zfp652 | alternative TSS | NM_001080207.1 | 0.19 | 13 | 0.1 | 3.6e-11 | -5.24 | 1.59e-07 | 0.43 | FALSE |
| PL | Zfp652 | alternative TSS | XM_039086628.1 | 0.13 | 1 | 0.08 | 1.6e-09 | -5.36 | 8.38e-08 | 0.42 | FALSE |
| PL | Cdk5rap3 | gene expression | Cdk5rap3 | 0.06 | 2 | 0.09 | 2.5e-10 | -5.31 | 1.11e-07 | 0 | FALSE |
| PL | Gngt2 | gene expression | Gngt2 | 0.02 | 1 | 0.02 | 2.2e-03 | -5.49 | 4.04e-08 | 0.03 | FALSE |
| PL | LOC108352124 | gene expression | LOC108352124 | 0.16 | 884 | 0.23 | 8.0e-25 | -5.33 | 1.01e-07 | 0 | FALSE |
| PL | LOC120095180 | gene expression | LOC120095180 | 0.47 | 47 | 0.53 | 7.0e-69 | 5.3 | 1.14e-07 | 0.09 | FALSE |
| PL | Lrrc46 | gene expression | Lrrc46 | 0.06 | 897 | 0.08 | 2.3e-09 | -5.36 | 8.16e-08 | 0 | FALSE |
| PL | Mrpl45 | gene expression | Mrpl45 | 0.74 | 56 | 0.77 | 2.2e-130 | 7.59 | 3.24e-14 | 0.84 | FALSE |
| PL | Npepps | gene expression | Npepps | 0.32 | 1 | 0.21 | 1.1e-22 | 7.55 | 4.28e-14 | 0.78 | FALSE |
| PL | Phb1 | gene expression | Phb1 | 0.03 | 1 | 0.01 | 1.1e-02 | -5.41 | 6.16e-08 | 0.05 | FALSE |
| PL | Phospho1 | gene expression | Phospho1 | 0.08 | 1 | 0.03 | 2.4e-04 | 5.33 | 9.62e-08 | 0.04 | FALSE |
| PL | Skap1 | gene expression | Skap1 | 0.21 | 1 | 0.23 | 8.5e-25 | 5.73 | 1.01e-08 | 0.43 | FALSE |
| PL | Sp2 | gene expression | Sp2 | 0.1 | 890 | 0.12 | 8.4e-13 | -5.39 | 7.12e-08 | 0 | FALSE |
| PL | Snf8 | isoform ratio | XM_039085602.1 | 0.06 | 1 | 0.06 | 1.6e-07 | -5.44 | 5.46e-08 | 0.12 | FALSE |
| PL | Zfp652 | isoform ratio | XM_039086630.1 | 0.05 | 1418 | 0.03 | 2.2e-04 | 6.06 | 1.38e-09 | 0.41 | FALSE |
| PL | LOC102547955 | intron excision ratio | chr10_81940032_81952955 | 0.08 | 1 | 0.06 | 2.9e-07 | 5.26 | 1.48e-07 | 0 | FALSE |
| PL | Mrpl45 | intron excision ratio | chr10_82310718_82313694 | 0.15 | 18 | 0.08 | 6.6e-09 | -7.68 | 1.62e-14 | 0.86 | TRUE |
| PL | Snf8 | intron excision ratio | chr10_80984820_80990408 | 0.11 | 1458 | 0.07 | 7.5e-08 | -6.85 | 7.32e-12 | 0.57 | FALSE |
| PL | Srcin1 | intron excision ratio | chr10_82512466_82516724 | 0.02 | 8 | 0.01 | 4.2e-02 | 7.62 | 2.62e-14 | 0.2 | FALSE |
| PL | Srcin1 | intron excision ratio | chr10_82543491_82546225 | 0.06 | 900 | 0.07 | 1.9e-08 | -5.52 | 3.32e-08 | 0 | FALSE |
| PL | LOC102547955 | mRNA stability | LOC102547955 | 0.02 | 958 | 0.02 | 3.2e-03 | 5.47 | 4.63e-08 | 0.06 | FALSE |
| PL | LOC120095180 | mRNA stability | LOC120095180 | 0.04 | 1402 | 0.02 | 2.1e-03 | 7 | 2.62e-12 | 0.45 | FALSE |
| PL | Mrpl45 | mRNA stability | Mrpl45 | 0.18 | 1 | 0.13 | 2.4e-14 | 7.62 | 2.54e-14 | 0.86 | FALSE |
| PL | Nfe2l1 | mRNA stability | Nfe2l1 | 0.03 | 1038 | 0.03 | 2.6e-04 | -5.55 | 2.88e-08 | 0.04 | FALSE |
| PL | Npepps | mRNA stability | Npepps | 0.03 | 7 | 0.04 | 5.1e-05 | 6.39 | 1.68e-10 | 0.67 | FALSE |
| PL | Scrn2 | mRNA stability | Scrn2 | 0.04 | 903 | 0.04 | 1.2e-05 | 5.85 | 4.86e-09 | 0.08 | FALSE |
| PL | Snf8 | mRNA stability | Snf8 | 0.02 | 1 | 0.02 | 1.4e-03 | -5.37 | 7.94e-08 | 0.03 | FALSE |
| PL | Zfp652 | mRNA stability | Zfp652 | 0.44 | 17 | 0.47 | 2.1e-57 | -5.18 | 2.27e-07 | 0.45 | FALSE |
| pVTA | Scrn2 | alternative TSS | XM_039086391.1 | 0.14 | 1 | 0.15 | 6.3e-07 | -5.54 | 3.09e-08 | 0.02 | FALSE |
| pVTA | Sp2 | alternative TSS | NM_001399622.1 | 0.05 | 890 | 0.01 | 7.4e-02 | 6.18 | 6.34e-10 | 0.26 | FALSE |
| pVTA | Sp2 | alternative TSS | XM_039086079.1 | 0.06 | 1 | 0.06 | 1.2e-03 | -7.72 | 1.15e-14 | 0.09 | FALSE |
| pVTA | Sp2 | alternative TSS | XM_039086080.1 | 0.09 | 1 | 0.09 | 1.5e-04 | 7.72 | 1.15e-14 | 0.2 | FALSE |
| pVTA | LOC102547955 | gene expression | LOC102547955 | 0.12 | 1 | 0.06 | 1.1e-03 | 7.67 | 1.78e-14 | 0.13 | FALSE |
| pVTA | LOC120095180 | gene expression | LOC120095180 | 0.24 | 1 | 0.27 | 5.8e-12 | -5.37 | 7.94e-08 | 0.1 | FALSE |
| pVTA | Mrpl45 | gene expression | Mrpl45 | 0.79 | 32 | 0.74 | 2.3e-45 | -7.76 | 8.78e-15 | 0.86 | FALSE |
| pVTA | Tbkbp1 | gene expression | Tbkbp1 | 0.09 | 1 | 0.08 | 2.1e-04 | -7.6 | 2.93e-14 | 0.13 | FALSE |
| pVTA | LOC102547955 | isoform ratio | XR_005490736.1 | 0.24 | 1 | 0.04 | 5.1e-03 | -7.67 | 1.78e-14 | 0.06 | FALSE |
| pVTA | Sp2 | isoform ratio | NM_001399622.1 | 0.07 | 890 | 0.01 | 6.8e-02 | 6.69 | 2.29e-11 | 0.38 | FALSE |
| pVTA | Gngt2 | intron excision ratio | chr10_80782293_80783525 | 0.11 | 1 | 0.05 | 3.3e-03 | 5.4 | 6.71e-08 | 0.04 | FALSE |
| pVTA | Nfe2l1 | intron excision ratio | chr10_81805225_81806459 | 0.18 | 1 | 0.06 | 1.3e-03 | 7.74 | 9.64e-15 | 0.1 | FALSE |
| pVTA | Osbpl7 | intron excision ratio | chr10_82036178_82037412 | 0.2 | 1 | 0.18 | 4.4e-08 | 5.39 | 7.14e-08 | 0 | FALSE |
| pVTA | Snf8 | intron excision ratio | chr10_80984820_80990408 | 0.08 | 1 | 0.03 | 1.6e-02 | 5.23 | 1.71e-07 | 0.04 | FALSE |
| pVTA | Srcin1 | intron excision ratio | chr10_82512466_82516041 | 0.07 | 900 | 0.04 | 8.1e-03 | -5.71 | 1.12e-08 | 0.14 | FALSE |
| pVTA | Srcin1 | intron excision ratio | chr10_82516163_82516724 | 0.13 | 900 | 0.14 | 9.1e-07 | -5.28 | 1.27e-07 | 0 | FALSE |
| pVTA | Cdk5rap3 | mRNA stability | Cdk5rap3 | 0.06 | 1 | 0.06 | 1.2e-03 | 5.55 | 2.80e-08 | 0.04 | FALSE |
| pVTA | Mrpl45 | mRNA stability | Mrpl45 | 0.16 | 1 | 0.15 | 4.6e-07 | 7.66 | 1.79e-14 | 0.77 | FALSE |
| pVTA | Phospho1 | mRNA stability | Phospho1 | 0.08 | 1427 | 0.06 | 9.5e-04 | -5.43 | 5.73e-08 | 0.33 | FALSE |
| RMTg | LOC102547047 | alternative TSS | XM_039087389.1 | 0.09 | 1 | 0.07 | 7.8e-03 | -5.44 | 5.44e-08 | 0.05 | FALSE |
| RMTg | LOC102547047 | alternative TSS | XM_039087394.1 | 0.17 | 1 | 0.09 | 2.3e-03 | 5.44 | 5.44e-08 | 0.05 | FALSE |
| RMTg | LOC108352124 | gene expression | LOC108352124 | 0.14 | 13 | 0.07 | 7.7e-03 | -6.78 | 1.18e-11 | 0.48 | FALSE |
| RMTg | Mrpl45 | gene expression | Mrpl45 | 0.67 | 43 | 0.27 | 6.0e-08 | -7.76 | 8.54e-15 | 0.86 | TRUE |
| RMTg | Nfe2l1 | isoform ratio | NM_001108293.2 | 0.1 | 1038 | 0.08 | 4.3e-03 | 5.44 | 5.25e-08 | 0.13 | FALSE |
| RMTg | Scrn2 | isoform ratio | XM_006247342.4 | 0.1 | 1 | 0.08 | 3.5e-03 | -5.54 | 3.09e-08 | 0.05 | FALSE |
| RMTg | LOC108352124 | intron excision ratio | chr10_81978783_81985229 | 0.08 | 884 | 0.02 | 7.7e-02 | -5.52 | 3.48e-08 | 0.16 | FALSE |
| RMTg | Mrpl45 | mRNA stability | Mrpl45 | 0.38 | 1 | 0.12 | 4.2e-04 | 7.48 | 7.24e-14 | 0.06 | FALSE |