chr9:61,634,901-65,095,463

Trait: Length with tail

Best TWAS P = 4.95e-16 · Best GWAS P= 1.95e-16 conditioned to 1.00e+00

Associated models

Tissue Gene RNA modality RNA phenotype h2 # weights Model R2 Model R2 P TWAS Z TWAS P Coloc P Joint
Adipose Mars2 alternative polyA XM_003750699.6 0.02 1 0.03 8.6e-04 -6.19 5.92e-10 0.03 FALSE
Adipose Sf3b1 alternative polyA NM_053426.1 0.05 1557 0.03 2.0e-04 7.39 1.52e-13 0.37 FALSE
Adipose Sf3b1 alternative polyA XM_017596654.2 0.05 1 0.03 3.0e-04 -6.47 9.54e-11 0.02 FALSE
Adipose LOC120094685 alternative TSS XR_010054979.1 0.03 1 0.02 3.0e-03 7.35 1.97e-13 0.03 FALSE
Adipose Slc39a10 alternative TSS NM_001108796.2 0.02 1 0.01 9.7e-03 -7.62 2.56e-14 0.06 FALSE
Adipose Slc39a10 alternative TSS XM_006244936.5 0.04 1 0.04 2.0e-05 7.42 1.20e-13 0.17 FALSE
Adipose Coq10b gene expression Coq10b 0.06 22 0.04 1.6e-05 -7.64 2.24e-14 0.72 TRUE
Adipose Hspd1 gene expression Hspd1 0.03 1509 0.02 3.6e-03 -5.81 6.18e-09 0.14 FALSE
Adipose LOC120094685 gene expression LOC120094685 0.1 1 0.1 5.4e-11 7.42 1.20e-13 0.59 FALSE
Adipose Pgap1 gene expression Pgap1 0.05 1 0.04 8.7e-06 -7.83 4.87e-15 0.2 FALSE
Adipose Plcl1 gene expression Plcl1 0.03 1693 0.03 1.7e-04 -6.07 1.28e-09 0.15 FALSE
Adipose Slc39a10 gene expression Slc39a10 0.02 1 0.02 6.2e-03 -7.42 1.20e-13 0.03 FALSE
Adipose Stk17b gene expression Stk17b 0.03 1749 0.01 6.7e-03 7.91 2.66e-15 0.46 FALSE
Adipose Boll isoform ratio XM_039084087.2 0.03 1707 0.03 2.7e-04 -6.36 1.98e-10 0.14 FALSE
Adipose Hecw2 isoform ratio XM_006244912.5 0.07 6 0.02 2.5e-03 -7.82 5.49e-15 0.56 FALSE
Adipose Mars2 isoform ratio XM_003750699.6 0.16 7 0.13 1.3e-14 -6.08 1.22e-09 0.05 FALSE
Adipose Mars2 isoform ratio XM_039084841.2 0.03 462 0.02 2.0e-03 6.52 7.16e-11 0.46 TRUE
Adipose Slc39a10 isoform ratio NM_001108796.2 0.02 1 0.01 9.7e-03 -7.62 2.56e-14 0.06 FALSE
Adipose Gtf3c3 intron excision ratio chr9_63433184_63436242 0.02 1 0.02 1.5e-03 -6.82 8.96e-12 0.03 FALSE
Adipose Hecw2 intron excision ratio chr9_62982726_62986764 0.03 2004 0.02 5.6e-03 7.48 7.37e-14 0.29 FALSE
Adipose Coq10b mRNA stability Coq10b 0.02 1517 0.01 7.1e-03 -7.33 2.27e-13 0.3 FALSE
Adipose Pgap1 mRNA stability Pgap1 0.15 21 0.14 9.5e-16 -7.91 2.60e-15 0.01 FALSE
BLA Mars2 alternative polyA XM_039084841.2 0.08 70 0.02 2.4e-02 6.5 8.16e-11 0.42 FALSE
BLA Sf3b1 alternative polyA NM_053426.1 0.21 1557 0.17 2.3e-09 7.78 7.19e-15 0.52 FALSE
BLA Sf3b1 alternative polyA XM_017596654.2 0.22 1557 0.17 1.7e-09 -7.75 9.04e-15 0.51 FALSE
BLA Mars2 isoform ratio XM_003750699.6 0.21 1443 0.11 1.2e-06 -7.68 1.60e-14 0.59 FALSE
BLA Sf3b1 isoform ratio XM_017596654.2 0.11 1 0.06 7.2e-04 -7.42 1.13e-13 0.04 FALSE
Brain Gtf3c3 alternative polyA NM_001108239.1 0.09 154 0.06 1.8e-06 6.35 2.11e-10 0.04 FALSE
Brain Gtf3c3 alternative polyA NM_001108239.1 0.08 192 0.06 2.7e-06 6.3 3.04e-10 0.04 FALSE
Brain Mars2 alternative polyA XM_003750699.6 0.11 1443 0.13 6.8e-12 -7.75 8.89e-15 0.62 FALSE
Brain Mars2 alternative polyA XM_039084841.2 0.03 1443 0.03 6.4e-04 7.59 3.13e-14 0.46 FALSE
Brain Sf3b1 alternative polyA NM_053426.1 0.34 1 0.29 8.9e-28 7.4 1.38e-13 0.28 FALSE
Brain Sf3b1 alternative polyA XM_017596654.2 0.35 1 0.29 9.8e-28 -7.18 7.07e-13 0.07 FALSE
Brain Stk17b alternative TSS XM_039082991.2 0.02 1 0.03 3.6e-04 -7.87 3.46e-15 0.04 FALSE
Brain C9h2orf66 gene expression C9h2orf66 0.07 1 0.07 7.6e-07 7.63 2.33e-14 0.09 FALSE
Brain Coq10b gene expression Coq10b 0.14 531 0.14 2.7e-13 -7.59 3.13e-14 0.82 FALSE
Brain LOC120094685 gene expression LOC120094685 0.13 1 0.08 4.2e-08 7.48 7.46e-14 0.69 FALSE
Brain Pgap1 gene expression Pgap1 0.23 1 0.25 8.1e-23 -7.36 1.78e-13 0.03 FALSE
Brain Slc39a10 gene expression Slc39a10 0.04 1 0.02 2.5e-03 -7.37 1.72e-13 0.04 FALSE
Brain Mars2 isoform ratio XM_003750699.6 0.18 18 0.21 1.2e-19 -7.59 3.18e-14 0.65 FALSE
Brain Mars2 isoform ratio XM_039084841.2 0.05 1443 0.05 8.5e-06 7.73 1.07e-14 0.57 FALSE
Brain Sf3b1 isoform ratio NM_053426.1 0.13 44 0.08 5.1e-08 6.89 5.62e-12 0.22 FALSE
Brain Sf3b1 isoform ratio XM_017596654.2 0.09 1 0.08 7.7e-08 -7.23 4.80e-13 0.1 FALSE
Brain Stk17b isoform ratio XM_039082991.2 0.03 1 0.02 5.9e-03 -7.27 3.54e-13 0.03 FALSE
Brain Mars2 mRNA stability Mars2 0.04 1443 0.01 2.1e-02 -7.07 1.57e-12 0.66 FALSE
Brain Pgap1 mRNA stability Pgap1 0.06 1 0.06 6.2e-06 -7.56 3.97e-14 0.1 FALSE
Brain Plcl1 mRNA stability Plcl1 0.04 1693 0.03 1.6e-03 6.62 3.47e-11 0.32 FALSE
IC Mars2 alternative polyA XM_003750699.6 0.11 32 0.09 1.7e-04 -7.5 6.41e-14 0.42 FALSE
IC Sf3b1 alternative polyA NM_053426.1 0.11 1 0.08 3.6e-04 7.18 7.07e-13 0.04 FALSE
IC Sf3b1 alternative polyA XM_017596654.2 0.11 1 0.09 9.2e-05 -7.18 7.07e-13 0.04 FALSE
IC Coq10b gene expression Coq10b 0.16 1517 0.08 4.4e-04 -6.17 6.78e-10 0.66 FALSE
IC LOC120094685 gene expression LOC120094685 0.09 1957 0.09 1.1e-04 6.49 8.53e-11 0.32 FALSE
IC Pgap1 gene expression Pgap1 0.08 1899 0.05 3.6e-03 -7.37 1.76e-13 0.5 FALSE
IC Mars2 isoform ratio XM_003750699.6 0.18 129 0.17 1.0e-07 -7.6 2.86e-14 0.26 FALSE
IL Mars2 alternative polyA XM_003750699.6 0.18 1012 0.07 7.5e-03 -7.63 2.44e-14 0.38 FALSE
IL Sf3b1 alternative polyA NM_053426.1 0.28 1 0.19 2.2e-05 7.69 1.49e-14 0.09 FALSE
IL Sf3b1 alternative polyA XM_017596654.2 0.28 1 0.19 2.2e-05 -7.69 1.49e-14 0.09 FALSE
IL LOC120094685 gene expression LOC120094685 0.46 27 0.15 1.6e-04 7.59 3.24e-14 0.42 TRUE
IL Mars2 isoform ratio XM_003750699.6 0.19 1012 0.11 1.3e-03 -7.53 5.09e-14 0.38 FALSE
IL LOC120094685 intron excision ratio chr9_62337994_62370408 0.19 1 0.06 1.5e-02 7.19 6.56e-13 0.05 FALSE
IL Slc39a10 intron excision ratio chr9_62370704_62423146 0.2 1 0.06 1.8e-02 7.16 8.30e-13 0.05 FALSE
LHb Mars2 alternative polyA XM_003750699.6 0.45 1012 0.15 2.1e-04 -7.85 4.30e-15 0.6 FALSE
LHb Sf3b1 alternative polyA NM_053426.1 0.28 17 0.19 3.5e-05 7.64 2.25e-14 0.62 FALSE
LHb Sf3b1 alternative polyA XM_017596654.2 0.27 17 0.19 3.2e-05 -7.64 2.25e-14 0.61 FALSE
LHb Coq10b gene expression Coq10b 0.41 1 0.11 1.7e-03 -7.69 1.49e-14 0.07 FALSE
LHb Mars2 isoform ratio XM_003750699.6 0.37 33 0.18 5.8e-05 -7.7 1.37e-14 0.54 FALSE
Liver Mars2 alternative polyA XM_003750699.6 0.27 27 0.24 9.6e-27 -7.29 3.20e-13 0.07 FALSE
Liver Mars2 alternative polyA XM_039084841.2 0.1 17 0.11 1.4e-12 7.18 7.07e-13 0.08 FALSE
Liver Ankrd44 gene expression Ankrd44 0.03 1 0.04 3.0e-05 7.18 7.07e-13 0.03 FALSE
Liver Ccdc150 gene expression Ccdc150 0.03 1 0.03 1.9e-04 -7.18 7.07e-13 0.03 FALSE
Liver LOC108351932 gene expression LOC108351932 0.05 1 0.05 7.3e-06 7.18 7.07e-13 0.06 TRUE
Liver LOC120094685 gene expression LOC120094685 0.1 82 0.04 6.6e-05 7.56 3.90e-14 0.37 FALSE
Liver Mars2 gene expression Mars2 0.04 1 0.04 1.3e-05 6.46 1.05e-10 0.02 FALSE
Liver Slc39a10 gene expression Slc39a10 0.03 23 0.01 5.0e-02 7.65 1.93e-14 0.36 FALSE
Liver Mars2 isoform ratio XM_003750699.6 0.29 30 0.34 1.0e-38 -7.26 3.77e-13 0.07 TRUE
Liver Mars2 isoform ratio XM_039084841.2 0.12 281 0.15 1.5e-16 7.23 4.91e-13 0.07 FALSE
Liver Hspd1 mRNA stability Hspd1 0.2 1 0.18 8.4e-20 -7.64 2.24e-14 0.61 FALSE
Liver Pgap1 mRNA stability Pgap1 0.03 2 0.01 7.4e-03 -7.95 1.81e-15 0.61 FALSE
NAcc Mars2 alternative polyA XM_003750699.6 0.12 1 0.08 1.2e-11 -7.2 6.11e-13 0.03 FALSE
NAcc Sf3b1 alternative polyA NM_053426.1 0.15 1 0.08 7.2e-12 7.29 3.19e-13 0.15 FALSE
NAcc Sf3b1 alternative polyA XM_017596654.2 0.15 1 0.08 7.1e-12 -7.29 3.19e-13 0.15 FALSE
NAcc Hecw2 alternative TSS NM_001108218.1 0.03 1 0.01 2.6e-02 -7.41 1.24e-13 0.03 FALSE
NAcc Ccdc150 gene expression Ccdc150 0.03 1 0.01 4.0e-02 -6.79 1.09e-11 0.03 FALSE
NAcc Coq10b gene expression Coq10b 0.05 1 0.01 7.1e-03 -7.73 1.09e-14 0.32 FALSE
NAcc Mob4 gene expression Mob4 0.03 1 0.01 9.4e-03 -7.42 1.13e-13 0.03 FALSE
NAcc Pgap1 gene expression Pgap1 0.12 17 0.05 1.2e-08 -6.77 1.29e-11 0.01 TRUE
NAcc Plcl1 gene expression Plcl1 0.02 1693 0.01 1.9e-02 6.35 2.20e-10 0.22 FALSE
NAcc Rftn2 gene expression Rftn2 0.04 1443 0.02 1.2e-03 -6.11 9.74e-10 0.13 FALSE
NAcc Sf3b1 gene expression Sf3b1 0.03 1 0.01 3.2e-03 7.4 1.38e-13 0.03 FALSE
NAcc LOC120094685 isoform ratio XR_010054978.1 0.03 1 0.01 4.3e-02 -7.52 5.60e-14 0.03 FALSE
NAcc Mars2 isoform ratio XM_003750699.6 0.15 1 0.09 4.8e-14 -7.2 6.11e-13 0.03 FALSE
NAcc Hspd1 mRNA stability Hspd1 0.08 1509 0.04 2.2e-07 -5.72 1.05e-08 0.75 FALSE
OFC Sf3b1 alternative polyA NM_053426.1 0.36 978 0.14 3.5e-04 7.36 1.82e-13 0.41 FALSE
OFC Sf3b1 alternative polyA XM_017596654.2 0.32 978 0.12 7.4e-04 -7.39 1.44e-13 0.4 FALSE
OFC Ccdc150 alternative TSS XM_039083605.2 0.26 17 0.07 9.2e-03 8.11 4.95e-16 0.31 TRUE
OFC C9h2orf66 gene expression C9h2orf66 0.2 295 0.06 1.4e-02 7.26 3.95e-13 0.2 FALSE
OFC LOC120094685 gene expression LOC120094685 0.39 1 0.07 9.5e-03 7.2 5.87e-13 0.05 FALSE
OFC Mars2 isoform ratio XM_003750699.6 0.29 1 0.12 9.0e-04 -7.69 1.49e-14 0.06 FALSE
PL Mars2 alternative polyA XM_003750699.6 0.08 1 0.07 3.2e-08 -7.69 1.51e-14 0.54 FALSE
PL Sf3b1 alternative polyA NM_053426.1 0.29 67 0.21 1.4e-22 7.33 2.33e-13 0.13 FALSE
PL Sf3b1 alternative polyA XM_017596654.2 0.28 72 0.2 9.3e-22 -7.32 2.43e-13 0.13 FALSE
PL LOC120094685 alternative TSS XR_010054979.1 0.03 1957 0.01 1.4e-02 7.5 6.22e-14 0.34 FALSE
PL Slc39a10 alternative TSS NM_001108796.2 0.03 1 0.02 6.7e-03 -7.58 3.43e-14 0.04 FALSE
PL C9h2orf66 gene expression C9h2orf66 0.06 11 0.03 2.5e-04 7.06 1.68e-12 0.67 FALSE
PL Ccdc150 gene expression Ccdc150 0.05 1 0.03 5.1e-04 -6.47 9.54e-11 0.03 FALSE
PL Coq10b gene expression Coq10b 0.05 1 0.04 1.3e-05 -7.64 2.21e-14 0.44 FALSE
PL LOC120094685 gene expression LOC120094685 0.22 1 0.23 1.3e-24 7.23 4.95e-13 0.26 FALSE
PL Pgap1 gene expression Pgap1 0.05 1 0.04 8.3e-05 -7.4 1.36e-13 0.03 FALSE
PL Plcl1 gene expression Plcl1 0.03 1693 0.02 6.0e-03 7.11 1.19e-12 0.53 FALSE
PL Mars2 isoform ratio XM_003750699.6 0.15 1 0.14 2.1e-15 -7.21 5.60e-13 0.03 FALSE
PL Sf3b1 isoform ratio XM_017596654.2 0.03 1 0.02 1.6e-03 -7.28 3.40e-13 0.03 FALSE
PL LOC120094685 intron excision ratio chr9_62337994_62370636 0.02 1957 0 8.9e-02 6.14 8.10e-10 0.2 TRUE
PL Slc39a10 intron excision ratio chr9_62370704_62423146 0.02 2015 0.02 5.1e-03 6.04 1.57e-09 0.18 FALSE
PL Slc39a10 intron excision ratio chr9_62406020_62423146 0.03 2015 0.01 1.2e-02 -7.5 6.34e-14 0.27 FALSE
PL Slc39a10 mRNA stability Slc39a10 0.15 34 0.07 1.8e-08 -6.43 1.31e-10 0.44 FALSE
pVTA Mars2 alternative polyA XM_003750699.6 0.22 1443 0.16 1.5e-12 -7.67 1.75e-14 0.1 FALSE
pVTA Mars2 alternative polyA XM_039084841.2 0.06 4 0.06 2.1e-05 7.3 2.81e-13 0.67 FALSE
pVTA Sf3b1 alternative polyA NM_053426.1 0.16 1 0.16 1.0e-12 7.18 7.07e-13 0.07 FALSE
pVTA Sf3b1 alternative polyA XM_017596654.2 0.16 1 0.16 1.2e-12 -7.21 5.60e-13 0.09 FALSE
pVTA Gtf3c3 alternative TSS XM_063267350.1 0.03 21 0.03 3.3e-03 6.45 1.10e-10 0.28 FALSE
pVTA C9h2orf66 gene expression C9h2orf66 0.08 2078 0.07 5.4e-06 5.43 5.73e-08 0.13 FALSE
pVTA Coq10b gene expression Coq10b 0.1 1 0.11 7.9e-09 -7.69 1.42e-14 0.77 FALSE
pVTA LOC120094685 gene expression LOC120094685 0.08 1957 0.03 3.6e-03 -6.07 1.27e-09 0.41 FALSE
pVTA Rftn2 gene expression Rftn2 0.03 1 0.03 2.7e-03 -7.21 5.60e-13 0.03 FALSE
pVTA Mars2 isoform ratio XM_003750699.6 0.18 32 0.23 4.2e-18 -7.6 3.03e-14 0.08 FALSE
pVTA Hspd1 mRNA stability Hspd1 0.09 1 0.09 6.6e-08 -7.64 2.24e-14 0.6 FALSE
pVTA Slc39a10 mRNA stability Slc39a10 0.06 1 0.06 3.0e-05 6.83 8.46e-12 0.03 FALSE
RMTg Dnah7 alternative TSS NM_001419550.1 0.11 1 0.1 1.6e-03 7.38 1.57e-13 0.05 FALSE
RMTg C9h2orf66 gene expression C9h2orf66 0.17 18 0.04 3.5e-02 7.96 1.67e-15 0.26 FALSE