Best TWAS P=3.29e-13 · Best GWAS P=2.08e-13 conditioned to NaN
Tissue | Gene | RNA modality | RNA phenotype | h2 | # weights | Model R2 | Model R2 P | TWAS Z | TWAS P | Coloc P | Joint |
---|---|---|---|---|---|---|---|---|---|---|---|
Adipose | Elk3 | gene expression | ENSRNOG00000004367 | 0.11 | 2579 | 0.05 | 2.5e-06 | 6.12 | 9.16e-10 | 0.29 | FALSE |
Adipose | Hal | gene expression | ENSRNOG00000004502 | 0.03 | 2432 | 0.01 | 6.9e-02 | -6.62 | 3.53e-11 | 0.34 | FALSE |
Adipose | Vezt | gene expression | ENSRNOG00000006514 | 0.11 | 1 | 0.08 | 3.2e-09 | -5.22 | 1.81e-07 | 0 | FALSE |
Adipose | Ndufa12 | gene expression | ENSRNOG00000007407 | 0.34 | 16 | 0.2 | 1.0e-21 | -5.45 | 4.91e-08 | 0.01 | FALSE |
Adipose | Cep83 | intron excision ratio | chr7:29322957:29325469 | 0.03 | 2703 | 0.02 | 1.8e-03 | -6.11 | 1.02e-09 | 0.32 | FALSE |
Adipose | Vezt | mRNA stability | ENSRNOG00000006514 | 0.07 | 2570 | 0.06 | 5.0e-07 | -6.16 | 7.08e-10 | 0.26 | FALSE |
BLA | Ntn4 | gene expression | ENSRNOG00000005573 | 0.06 | 2475 | 0.03 | 8.1e-03 | 5.1 | 3.46e-07 | 0.39 | FALSE |
BLA | Plxnc1 | gene expression | ENSRNOG00000007970 | 0.17 | 3125 | 0.11 | 2.6e-06 | -5.1 | 3.44e-07 | 0.01 | FALSE |
BLA | Nudt4 | gene expression | ENSRNOG00000009094 | 0.46 | 64 | 0.38 | 1.9e-21 | 5.73 | 9.97e-09 | 0.05 | FALSE |
BLA | Metap2 | gene expression | ENSRNOG00000021881 | 0.08 | 1 | 0.07 | 1.9e-04 | 6.76 | 1.40e-11 | 0.18 | FALSE |
BLA | Mir331 | gene expression | ENSRNOG00000035543 | 0.06 | 2366 | 0.06 | 5.1e-04 | 6.65 | 2.92e-11 | 0.22 | FALSE |
BLA | Fgd6 | gene expression | ENSRNOG00000054515 | 0.11 | 1 | 0.13 | 2.7e-07 | -5.62 | 1.90e-08 | 0.03 | FALSE |
BLA | Tmcc3 | isoform ratio | ENSRNOT00000102476 | 0.1 | 2424 | 0.04 | 3.2e-03 | -6.61 | 3.93e-11 | 0.39 | FALSE |
BLA | Lta4h | intron excision ratio | chr7:27997602:27999743 | 0.07 | 2332 | 0.02 | 2.6e-02 | -5.41 | 6.28e-08 | 0.3 | FALSE |
BLA | Vezt | intron excision ratio | chr7:28557619:28560958 | 0.07 | 2571 | 0.01 | 6.6e-02 | 5.65 | 1.60e-08 | 0.2 | FALSE |
BLA | Tmcc3 | intron excision ratio | chr7:29100427:29159418 | 0.12 | 10 | 0.11 | 1.0e-06 | 5.36 | 8.35e-08 | 0.23 | FALSE |
BLA | Tmcc3 | intron excision ratio | chr7:29133627:29159418 | 0.07 | 2424 | 0.04 | 4.3e-03 | -6.22 | 4.96e-10 | 0.38 | FALSE |
BLA | Vezt | mRNA stability | ENSRNOG00000006514 | 0.4 | 1 | 0.42 | 4.0e-24 | 6.01 | 1.88e-09 | 0.19 | FALSE |
BLA | Plxnc1 | mRNA stability | ENSRNOG00000007970 | 0.11 | 1 | 0.11 | 3.0e-06 | 6.72 | 1.77e-11 | 0.47 | FALSE |
Brain | Cdk17 | gene expression | ENSRNOG00000004148 | 0.12 | 78 | 0.07 | 1.8e-07 | 5.36 | 8.39e-08 | 0 | FALSE |
Brain | Lta4h | gene expression | ENSRNOG00000004494 | 0.05 | 1 | 0.04 | 9.1e-05 | 6.15 | 7.74e-10 | 0.04 | FALSE |
Brain | Vezt | gene expression | ENSRNOG00000006514 | 0.24 | 2571 | 0.23 | 1.2e-20 | -5.95 | 2.66e-09 | 0.42 | FALSE |
Brain | Ndufa12 | gene expression | ENSRNOG00000007407 | 0.49 | 2574 | 0.34 | 6.1e-32 | -5.64 | 1.72e-08 | 0.01 | FALSE |
Brain | Socs2 | gene expression | ENSRNOG00000008965 | 0.22 | 118 | 0.11 | 5.0e-10 | 6.46 | 1.03e-10 | 0.93 | FALSE |
Brain | Nudt4 | gene expression | ENSRNOG00000009094 | 0.86 | 57 | 0.74 | 8.6e-100 | 5.62 | 1.95e-08 | 0 | FALSE |
Brain | Fgd6 | gene expression | ENSRNOG00000054515 | 0.16 | 1 | 0.23 | 8.6e-21 | -5.71 | 1.10e-08 | 0.04 | FALSE |
Brain | Lta4h | mRNA stability | ENSRNOG00000004494 | 0.05 | 2332 | 0.03 | 9.8e-04 | 5.77 | 8.14e-09 | 0.6 | FALSE |
Brain | Vezt | mRNA stability | ENSRNOG00000006514 | 0.2 | 28 | 0.2 | 1.6e-18 | 5.72 | 1.04e-08 | 0.3 | TRUE |
Eye | Lta4h | gene expression | ENSRNOG00000004494 | 0.41 | 24 | 0.07 | 3.0e-02 | 5.62 | 1.93e-08 | 0.41 | FALSE |
Eye | Fgd6 | gene expression | ENSRNOG00000054515 | 0.52 | 2560 | 0.15 | 2.3e-03 | -6.22 | 4.95e-10 | 0.17 | FALSE |
Eye | Elk3 | isoform ratio | ENSRNOT00000005911 | 0.36 | 2579 | 0.1 | 1.2e-02 | -6.65 | 2.92e-11 | 0.45 | FALSE |
IL | Vezt | gene expression | ENSRNOG00000006514 | 0.29 | 4 | 0.26 | 7.2e-07 | -6.51 | 7.43e-11 | 0.38 | FALSE |
IL | Vezt | mRNA stability | ENSRNOG00000006514 | 0.23 | 2568 | 0.1 | 2.4e-03 | 5.96 | 2.47e-09 | 0.26 | FALSE |
LHb | Ntn4 | gene expression | ENSRNOG00000005573 | 0.21 | 2473 | 0.06 | 1.6e-02 | -5.73 | 9.92e-09 | 0.49 | FALSE |
LHb | Plxnc1 | gene expression | ENSRNOG00000007970 | 0.41 | 3118 | 0.22 | 7.2e-06 | -6.47 | 9.56e-11 | 0.23 | FALSE |
LHb | Cdk17 | isoform ratio | ENSRNOT00000109496 | 0.18 | 2984 | 0.11 | 1.4e-03 | 5.24 | 1.58e-07 | 0.26 | FALSE |
LHb | Vezt | mRNA stability | ENSRNOG00000006514 | 0.4 | 84 | 0.21 | 1.1e-05 | 6.05 | 1.48e-09 | 0.4 | FALSE |
Liver | Amdhd1 | gene expression | ENSRNOG00000005266 | 0.37 | 40 | 0.34 | 1.7e-39 | -5.74 | 9.36e-09 | 0 | FALSE |
Liver | Ntn4 | gene expression | ENSRNOG00000005573 | 0.1 | 2475 | 0.06 | 4.3e-07 | -6.6 | 4.15e-11 | 0.54 | FALSE |
Liver | Ndufa12 | gene expression | ENSRNOG00000007407 | 0.42 | 320 | 0.46 | 1.8e-56 | -5.39 | 7.05e-08 | 0.01 | FALSE |
Liver | Nudt4 | gene expression | ENSRNOG00000009094 | 0.1 | 21 | 0.06 | 4.1e-07 | -5.16 | 2.42e-07 | 0.01 | TRUE |
Liver | Ube2n | gene expression | ENSRNOG00000058053 | 0.03 | 7 | 0.02 | 1.1e-03 | -5.67 | 1.41e-08 | 0.01 | FALSE |
Liver | Mrpl42 | intron excision ratio | chr7:30140191:30141604 | 0.03 | 32 | 0.02 | 2.2e-03 | 5.44 | 5.28e-08 | 0.06 | FALSE |
Liver | Lta4h | mRNA stability | ENSRNOG00000004494 | 0.11 | 1 | 0.11 | 6.2e-12 | 5.99 | 2.09e-09 | 0.1 | FALSE |
Liver | Socs2 | mRNA stability | ENSRNOG00000008965 | 0.04 | 3463 | 0.02 | 5.8e-03 | -6.12 | 9.15e-10 | 0.08 | FALSE |
NAcc | AABR07056633.1 | alternative TSS | ENSRNOT00000104436 | 0.04 | 2952 | 0.03 | 1.5e-03 | -5.13 | 2.88e-07 | 0.04 | FALSE |
NAcc | Elk3 | gene expression | ENSRNOG00000004367 | 0.04 | 2578 | 0.02 | 1.6e-02 | 6.2 | 5.51e-10 | 0.24 | FALSE |
NAcc | Lta4h | gene expression | ENSRNOG00000004494 | 0.04 | 1 | 0.05 | 8.4e-05 | 6.42 | 1.38e-10 | 0.11 | FALSE |
NAcc | Vezt | gene expression | ENSRNOG00000006514 | 0.1 | 2569 | 0.14 | 1.4e-10 | -5.75 | 8.73e-09 | 0.03 | FALSE |
NAcc | Plxnc1 | gene expression | ENSRNOG00000007970 | 0.12 | 6 | 0.13 | 1.0e-09 | -6.19 | 6.10e-10 | 0.06 | TRUE |
NAcc | Tmcc3 | isoform ratio | ENSRNOT00000102476 | 0.05 | 2420 | 0.04 | 8.4e-04 | -5.12 | 3.04e-07 | 0.26 | FALSE |
NAcc | Tmcc3 | intron excision ratio | chr7:29133627:29159418 | 0.05 | 2420 | 0.05 | 1.4e-04 | -6.17 | 6.70e-10 | 0.4 | FALSE |
NAcc | Lta4h | mRNA stability | ENSRNOG00000004494 | 0.06 | 7 | 0.06 | 3.2e-05 | 6.04 | 1.58e-09 | 0.6 | FALSE |
NAcc | Vezt | mRNA stability | ENSRNOG00000006514 | 0.14 | 10 | 0.11 | 1.5e-08 | 5.7 | 1.20e-08 | 0.15 | FALSE |
OFC | Vezt | gene expression | ENSRNOG00000006514 | 0.38 | 117 | 0.28 | 3.0e-07 | -6.61 | 3.89e-11 | 0.6 | FALSE |
OFC | Ndufa12 | gene expression | ENSRNOG00000007407 | 0.19 | 1 | 0.16 | 1.1e-04 | -6.2 | 5.50e-10 | 0.08 | FALSE |
OFC | Socs2 | isoform ratio | ENSRNOT00000103867 | 0.33 | 1 | 0.15 | 2.3e-04 | -5.78 | 7.50e-09 | 0.05 | FALSE |
OFC | Vezt | mRNA stability | ENSRNOG00000006514 | 0.24 | 2568 | 0.14 | 3.2e-04 | 6.25 | 4.19e-10 | 0.36 | FALSE |
PL | Socs2 | alternative polyA | ENSRNOT00000011948 | 0.1 | 1 | 0.05 | 1.5e-04 | 6.57 | 4.90e-11 | 0.26 | FALSE |
PL | Socs2 | alternative polyA | ENSRNOT00000103867 | 0.09 | 16 | 0.04 | 2.5e-04 | -6.48 | 8.90e-11 | 0.14 | FALSE |
PL | Vezt | gene expression | ENSRNOG00000006514 | 0.35 | 7 | 0.41 | 4.8e-33 | -5.75 | 8.67e-09 | 0.03 | FALSE |
PL | Ndufa12 | gene expression | ENSRNOG00000007407 | 0.07 | 18 | 0.07 | 1.0e-05 | -5.99 | 2.13e-09 | 0.52 | TRUE |
PL | Socs2 | gene expression | ENSRNOG00000008965 | 0.05 | 1 | 0.04 | 9.1e-04 | 7.28 | 3.29e-13 | 0.44 | TRUE |
PL | Nudt4 | gene expression | ENSRNOG00000009094 | 0.68 | 84 | 0.55 | 1.1e-49 | 5.89 | 3.91e-09 | 0 | FALSE |
PL | Fgd6 | gene expression | ENSRNOG00000054515 | 0.07 | 7 | 0.1 | 5.4e-08 | -5.44 | 5.25e-08 | 0.19 | FALSE |
PL | Socs2 | isoform ratio | ENSRNOT00000011948 | 0.1 | 1 | 0.05 | 1.4e-04 | 5.99 | 2.11e-09 | 0.02 | TRUE |
PL | Socs2 | isoform ratio | ENSRNOT00000103867 | 0.1 | 1 | 0.05 | 1.3e-04 | -5.99 | 2.11e-09 | 0.02 | FALSE |
PL | Vezt | mRNA stability | ENSRNOG00000006514 | 0.27 | 1 | 0.38 | 1.6e-30 | 5.94 | 2.77e-09 | 0.14 | FALSE |
PL | Plxnc1 | mRNA stability | ENSRNOG00000007970 | 0.05 | 1 | 0.05 | 1.2e-04 | 6.04 | 1.50e-09 | 0.03 | FALSE |
PL | Cradd | mRNA stability | ENSRNOG00000008507 | 0.09 | 1 | 0.07 | 2.3e-06 | 6.65 | 2.94e-11 | 0.34 | FALSE |