Hub : Traits : Tail length : ← →

chr7:26,902,995-30,904,027

Trait: Tail length

Best TWAS P=3.29151e-13 · Best GWAS P=2.083284e-13 conditioned to NaN

Associated models

#	Tissue	Gene	Modality	RNA phenotype	h2	eQTL R2	model	# weights	model R2	model R2 P	eQTL GWAS Z	TWAS Z	TWAS P	Top SNP corr	PP3	PP4	joint
1	Adipose	Elk3	gene expression	ENSRNOG00000004367	0.11	0.05	blup	2579	0.05	2.5e-06	-5.98	6.1	9.2e-10	-0.50	0.71	0.29	FALSE
2	Adipose	Hal	gene expression	ENSRNOG00000004502	0.03	0.00	blup	2432	0.01	6.9e-02	-6.56	-6.6	3.5e-11	0.56	0.30	0.34	FALSE
3	Adipose	Vezt	gene expression	ENSRNOG00000006514	0.11	0.08	top1	1	0.08	3.2e-09	-5.22	-5.2	1.8e-07	0.57	1.00	0.00	FALSE
4	Adipose	Ndufa12	gene expression	ENSRNOG00000007407	0.34	0.19	lasso	16	0.20	1.0e-21	-5.36	-5.5	4.9e-08	0.49	0.99	0.01	FALSE
5	Adipose	Cep83	intron excision ratio	chr7:29322957:29325469	0.03	0.01	blup	2703	0.02	1.8e-03	-5.26	-6.1	1.0e-09	0.52	0.55	0.32	FALSE
6	Adipose	Vezt	mRNA stability	ENSRNOG00000006514	0.07	0.04	blup	2570	0.06	5.0e-07	-5.88	-6.2	7.1e-10	0.60	0.74	0.26	FALSE
7	BLA	Ntn4	gene expression	ENSRNOG00000005573	0.06	0.02	blup	2475	0.03	8.1e-03	-0.19	5.1	3.5e-07	-0.59	0.42	0.39	FALSE
8	BLA	Plxnc1	gene expression	ENSRNOG00000007970	0.17	0.06	blup	3125	0.11	2.6e-06	-4.02	-5.1	3.4e-07	0.43	0.99	0.01	FALSE
9	BLA	Nudt4	gene expression	ENSRNOG00000009094	0.46	0.35	lasso	64	0.38	1.9e-21	4.57	5.7	1.0e-08	-0.31	0.95	0.05	FALSE
10	BLA	Metap2	gene expression	ENSRNOG00000021881	0.08	0.07	top1	1	0.07	1.9e-04	-6.76	6.8	1.4e-11	-0.67	0.08	0.18	FALSE
11	BLA	Mir331	gene expression	ENSRNOG00000035543	0.06	0.04	blup	2366	0.06	5.1e-04	-5.41	6.7	2.9e-11	-0.64	0.75	0.22	FALSE
12	BLA	Fgd6	gene expression	ENSRNOG00000054515	0.11	0.13	top1	1	0.13	2.7e-07	-5.62	-5.6	1.9e-08	0.67	0.90	0.03	FALSE
13	BLA	Tmcc3	isoform ratio	ENSRNOT00000102476	0.10	0.02	blup	2424	0.04	3.2e-03	-5.49	-6.6	3.9e-11	0.57	0.49	0.39	FALSE
14	BLA	Lta4h	intron excision ratio	chr7:27997602:27999743	0.07	0.01	blup	2332	0.02	2.6e-02	-3.61	-5.4	6.3e-08	0.51	0.58	0.30	FALSE
15	BLA	Vezt	intron excision ratio	chr7:28557619:28560958	0.07	0.01	blup	2571	0.01	6.6e-02	2.95	5.7	1.6e-08	-0.50	0.50	0.20	FALSE
16	BLA	Tmcc3	intron excision ratio	chr7:29100427:29159418	0.12	0.10	lasso	10	0.11	1.0e-06	-3.90	5.4	8.4e-08	-0.45	0.75	0.23	FALSE
17	BLA	Tmcc3	intron excision ratio	chr7:29133627:29159418	0.07	0.02	blup	2424	0.04	4.3e-03	-5.65	-6.2	5.0e-10	0.60	0.44	0.38	FALSE
18	BLA	Vezt	mRNA stability	ENSRNOG00000006514	0.40	0.42	top1	1	0.42	4.0e-24	-6.01	6.0	1.9e-09	-0.66	0.81	0.19	FALSE
19	BLA	Plxnc1	mRNA stability	ENSRNOG00000007970	0.11	0.11	top1	1	0.11	3.0e-06	-6.72	6.7	1.8e-11	-0.61	0.20	0.47	FALSE
20	Brain	Cdk17	gene expression	ENSRNOG00000004148	0.12	0.06	enet	78	0.07	1.8e-07	-5.08	5.4	8.4e-08	-0.25	1.00	0.00	FALSE
21	Brain	Lta4h	gene expression	ENSRNOG00000004494	0.05	0.04	top1	1	0.04	9.1e-05	-6.15	6.2	7.7e-10	-0.60	0.11	0.04	FALSE
22	Brain	Vezt	gene expression	ENSRNOG00000006514	0.24	0.22	blup	2571	0.23	1.2e-20	-6.16	-6.0	2.7e-09	0.67	0.58	0.42	FALSE
23	Brain	Ndufa12	gene expression	ENSRNOG00000007407	0.49	0.32	blup	2574	0.34	6.1e-32	-5.44	-5.6	1.7e-08	0.50	0.99	0.01	FALSE
24	Brain	Socs2	gene expression	ENSRNOG00000008965	0.22	0.09	enet	118	0.11	5.0e-10	-6.72	6.5	1.0e-10	-0.56	0.07	0.93	FALSE
25	Brain	Nudt4	gene expression	ENSRNOG00000009094	0.86	0.63	lasso	57	0.74	8.6e-100	5.10	5.6	1.9e-08	0.01	1.00	0.00	FALSE
26	Brain	Fgd6	gene expression	ENSRNOG00000054515	0.16	0.23	top1	1	0.23	8.6e-21	-5.71	-5.7	1.1e-08	0.64	0.96	0.04	FALSE
27	Brain	Lta4h	mRNA stability	ENSRNOG00000004494	0.05	0.02	blup	2332	0.03	9.8e-04	-6.15	5.8	8.1e-09	-0.61	0.35	0.60	FALSE
28	Brain	Vezt	mRNA stability	ENSRNOG00000006514	0.20	0.20	lasso	28	0.20	1.6e-18	-5.66	5.7	1.0e-08	-0.69	0.70	0.30	TRUE
29	Eye	Lta4h	gene expression	ENSRNOG00000004494	0.41	0.04	lasso	24	0.07	3.0e-02	-5.77	5.6	1.9e-08	-0.62	0.26	0.41	FALSE
30	Eye	Fgd6	gene expression	ENSRNOG00000054515	0.52	0.13	blup	2560	0.15	2.3e-03	-5.37	-6.2	5.0e-10	0.60	0.43	0.17	FALSE
31	Eye	Elk3	isoform ratio	ENSRNOT00000005911	0.36	0.01	blup	2579	0.10	1.2e-02	-5.80	-6.7	2.9e-11	0.59	0.26	0.45	FALSE
32	IL	Vezt	gene expression	ENSRNOG00000006514	0.29	0.20	lasso	4	0.26	7.2e-07	-5.36	-6.5	7.4e-11	0.57	0.60	0.38	FALSE
33	IL	Vezt	mRNA stability	ENSRNOG00000006514	0.23	0.06	blup	2568	0.10	2.4e-03	-5.13	6.0	2.5e-09	-0.61	0.60	0.26	FALSE
34	LHb	Ntn4	gene expression	ENSRNOG00000005573	0.21	0.04	blup	2473	0.06	1.6e-02	-6.57	-5.7	9.9e-09	0.61	0.32	0.49	FALSE
35	LHb	Plxnc1	gene expression	ENSRNOG00000007970	0.41	0.09	blup	3118	0.22	7.2e-06	-4.41	-6.5	9.6e-11	0.58	0.73	0.23	FALSE
36	LHb	Cdk17	isoform ratio	ENSRNOT00000109496	0.18	0.05	blup	2984	0.11	1.4e-03	-4.16	5.2	1.6e-07	-0.48	0.50	0.26	FALSE
37	LHb	Vezt	mRNA stability	ENSRNOG00000006514	0.40	0.20	enet	84	0.21	1.1e-05	-5.72	6.0	1.5e-09	-0.69	0.60	0.40	FALSE
38	Liver	Amdhd1	gene expression	ENSRNOG00000005266	0.37	0.31	lasso	40	0.34	1.7e-39	-4.88	-5.7	9.4e-09	0.53	1.00	0.00	FALSE
39	Liver	Ntn4	gene expression	ENSRNOG00000005573	0.10	0.05	blup	2475	0.06	4.3e-07	-5.61	-6.6	4.2e-11	0.66	0.46	0.54	FALSE
40	Liver	Ndufa12	gene expression	ENSRNOG00000007407	0.42	0.43	enet	320	0.46	1.8e-56	-5.36	-5.4	7.1e-08	0.47	0.99	0.01	FALSE
41	Liver	Nudt4	gene expression	ENSRNOG00000009094	0.10	0.06	enet	21	0.06	4.1e-07	5.29	-5.2	2.4e-07	-0.01	0.97	0.01	TRUE
42	Liver	Ube2n	gene expression	ENSRNOG00000058053	0.03	0.02	enet	7	0.02	1.1e-03	4.82	-5.7	1.4e-08	0.30	0.82	0.01	FALSE
43	Liver	Mrpl42	intron excision ratio	chr7:30140191:30141604	0.03	0.02	enet	32	0.02	2.2e-03	6.08	5.4	5.3e-08	0.01	0.53	0.06	FALSE
44	Liver	Lta4h	mRNA stability	ENSRNOG00000004494	0.11	0.11	top1	1	0.11	6.2e-12	-5.99	6.0	2.1e-09	-0.59	0.90	0.10	FALSE
45	Liver	Socs2	mRNA stability	ENSRNOG00000008965	0.04	0.02	blup	3463	0.02	5.8e-03	6.68	-6.1	9.2e-10	0.44	0.78	0.08	FALSE
46	NAcc	AABR07056633.1	alternative TSS	ENSRNOT00000104436	0.04	0.03	blup	2952	0.03	1.5e-03	-4.76	-5.1	2.9e-07	0.41	0.93	0.04	FALSE
47	NAcc	Elk3	gene expression	ENSRNOG00000004367	0.04	0.00	blup	2578	0.02	1.6e-02	3.20	6.2	5.5e-10	-0.40	0.54	0.24	FALSE
48	NAcc	Lta4h	gene expression	ENSRNOG00000004494	0.04	0.05	top1	1	0.05	8.4e-05	-6.42	6.4	1.4e-10	-0.58	0.12	0.11	FALSE
49	NAcc	Vezt	gene expression	ENSRNOG00000006514	0.10	0.09	blup	2569	0.14	1.4e-10	-5.44	-5.8	8.7e-09	0.55	0.97	0.03	FALSE
50	NAcc	Plxnc1	gene expression	ENSRNOG00000007970	0.12	0.13	lasso	6	0.13	1.0e-09	-5.83	-6.2	6.1e-10	0.56	0.94	0.06	TRUE
51	NAcc	Tmcc3	isoform ratio	ENSRNOT00000102476	0.05	0.02	blup	2420	0.04	8.4e-04	-4.37	-5.1	3.0e-07	0.51	0.50	0.26	FALSE
52	NAcc	Tmcc3	intron excision ratio	chr7:29133627:29159418	0.05	0.03	blup	2420	0.05	1.4e-04	-5.71	-6.2	6.7e-10	0.58	0.57	0.40	FALSE
53	NAcc	Lta4h	mRNA stability	ENSRNOG00000004494	0.06	0.05	lasso	7	0.06	3.2e-05	-6.62	6.0	1.6e-09	-0.64	0.39	0.60	FALSE
54	NAcc	Vezt	mRNA stability	ENSRNOG00000006514	0.14	0.08	lasso	10	0.11	1.5e-08	-6.17	5.7	1.2e-08	-0.68	0.85	0.15	FALSE
55	OFC	Vezt	gene expression	ENSRNOG00000006514	0.38	0.25	enet	117	0.28	3.0e-07	-6.43	-6.6	3.9e-11	0.67	0.40	0.60	FALSE
56	OFC	Ndufa12	gene expression	ENSRNOG00000007407	0.19	0.16	top1	1	0.16	1.1e-04	-6.20	-6.2	5.5e-10	0.63	0.14	0.08	FALSE
57	OFC	Socs2	isoform ratio	ENSRNOT00000103867	0.33	0.15	top1	1	0.15	2.3e-04	5.78	-5.8	7.5e-09	0.04	0.15	0.05	FALSE
58	OFC	Vezt	mRNA stability	ENSRNOG00000006514	0.24	0.12	blup	2568	0.14	3.2e-04	-5.72	6.2	4.2e-10	-0.67	0.60	0.36	FALSE
59	PL	Socs2	alternative polyA	ENSRNOT00000011948	0.10	0.05	top1	1	0.05	1.5e-04	6.57	6.6	4.9e-11	-0.34	0.54	0.26	FALSE
60	PL	Socs2	alternative polyA	ENSRNOT00000103867	0.09	0.04	enet	16	0.04	2.5e-04	6.57	-6.5	8.9e-11	0.20	0.86	0.14	FALSE
61	PL	Vezt	gene expression	ENSRNOG00000006514	0.35	0.39	lasso	7	0.41	4.8e-33	-5.11	-5.8	8.7e-09	0.60	0.98	0.03	FALSE
62	PL	Ndufa12	gene expression	ENSRNOG00000007407	0.07	0.06	lasso	18	0.07	1.0e-05	-5.36	-6.0	2.1e-09	0.36	0.48	0.52	TRUE
63	PL	Socs2	gene expression	ENSRNOG00000008965	0.05	0.04	top1	1	0.04	9.1e-04	-7.28	7.3	3.3e-13	-0.69	0.06	0.44	TRUE
64	PL	Nudt4	gene expression	ENSRNOG00000009094	0.68	0.51	enet	84	0.55	1.1e-49	-4.84	5.9	3.9e-09	-0.34	1.00	0.00	FALSE
65	PL	Fgd6	gene expression	ENSRNOG00000054515	0.07	0.09	lasso	7	0.10	5.4e-08	-5.44	-5.4	5.3e-08	0.50	0.81	0.19	FALSE
66	PL	Socs2	isoform ratio	ENSRNOT00000011948	0.10	0.05	top1	1	0.05	1.4e-04	5.99	6.0	2.1e-09	-0.30	0.76	0.02	TRUE
67	PL	Socs2	isoform ratio	ENSRNOT00000103867	0.10	0.05	top1	1	0.05	1.3e-04	5.99	-6.0	2.1e-09	0.30	0.76	0.02	FALSE
68	PL	Vezt	mRNA stability	ENSRNOG00000006514	0.27	0.38	top1	1	0.38	1.6e-30	-5.94	5.9	2.8e-09	-0.66	0.86	0.14	FALSE
69	PL	Plxnc1	mRNA stability	ENSRNOG00000007970	0.05	0.05	top1	1	0.05	1.2e-04	-6.04	6.0	1.5e-09	-0.59	0.20	0.03	FALSE
70	PL	Cradd	mRNA stability	ENSRNOG00000008507	0.09	0.08	top1	1	0.07	2.3e-06	-6.65	6.6	2.9e-11	-0.63	0.44	0.34	FALSE

h2: Heritability estimate for the given transcriptomic model. PP3: Posterior probability of two distinct causal variants. PP4: Posterior probability of a single shared causal variant. joint: Whether the RNA phenotype is in the joint model.