Best TWAS P = 2.11e-10 · Best GWAS P= 3.40e-08 conditioned to 1.92e-01
| Tissue | Gene | RNA modality | RNA phenotype | h2 | # weights | Model R2 | Model R2 P | TWAS Z | TWAS P | Coloc P | Joint |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Adipose | Ehd4 | gene expression | Ehd4 | 0.07 | 1486 | 0.04 | 3.7e-05 | -5.33 | 9.74e-08 | 0.72 | FALSE |
| Adipose | Vps18 | gene expression | Vps18 | 0.12 | 1 | 0.08 | 8.2e-09 | 5.26 | 1.47e-07 | 0.91 | FALSE |
| BLA | Rpap1 | gene expression | Rpap1 | 0.1 | 1 | 0.08 | 6.6e-05 | -5.32 | 1.03e-07 | 0.22 | FALSE |
| BLA | Pla2g4b | isoform ratio | XM_006234775.4 | 0.05 | 1 | 0.03 | 1.7e-02 | 5.27 | 1.34e-07 | 0.04 | FALSE |
| BLA | Itpka | mRNA stability | Itpka | 0.08 | 1 | 0.03 | 1.5e-02 | -5.32 | 1.04e-07 | 0.07 | FALSE |
| Brain | Pla2g4b | alternative TSS | XM_039104945.1 | 0.02 | 1 | 0.02 | 5.7e-03 | 5.4 | 6.48e-08 | 0.05 | FALSE |
| Brain | Ankrd63 | gene expression | Ankrd63 | 0.1 | 98 | 0.05 | 2.5e-05 | -5.4 | 6.67e-08 | 0.07 | FALSE |
| Brain | Jmjd7 | gene expression | Jmjd7 | 0.08 | 1503 | 0.1 | 1.3e-09 | 5.28 | 1.28e-07 | 0.73 | FALSE |
| Brain | Pla2g4b | gene expression | Pla2g4b | 0.15 | 1 | 0.21 | 4.8e-19 | 5.52 | 3.40e-08 | 0.86 | FALSE |
| Brain | Vps18 | gene expression | Vps18 | 0.03 | 1 | 0.03 | 1.4e-03 | 5.29 | 1.20e-07 | 0.16 | FALSE |
| Brain | Mapkbp1 | isoform ratio | NM_001108589.1 | 0.09 | 1 | 0.11 | 1.0e-10 | 5.3 | 1.17e-07 | 0.65 | FALSE |
| Brain | Mapkbp1 | isoform ratio | XM_006234781.5 | 0.1 | 1 | 0.12 | 1.6e-11 | -5.3 | 1.17e-07 | 0.65 | FALSE |
| Eye | C3h15orf62 | isoform ratio | NM_001399846.1 | 0.57 | 1 | 0.19 | 6.6e-04 | 5.3 | 1.17e-07 | 0.08 | FALSE |
| Eye | C3h15orf62 | isoform ratio | NM_001399847.1 | 0.59 | 1 | 0.2 | 4.9e-04 | -5.3 | 1.17e-07 | 0.08 | FALSE |
| IC | Mga | intron excision ratio | chr3_127328375_127334111 | 0.09 | 1 | 0.05 | 3.9e-03 | -5.26 | 1.42e-07 | 0.05 | FALSE |
| IC | Sptbn5 | intron excision ratio | chr3_127467945_127470706 | 0.12 | 9 | 0.09 | 1.9e-04 | -5.21 | 1.90e-07 | 0.69 | FALSE |
| IL | Sptbn5 | gene expression | Sptbn5 | 0.47 | 1 | 0.19 | 3.3e-05 | 5.46 | 4.78e-08 | 0.19 | FALSE |
| IL | Itpka | mRNA stability | Itpka | 0.13 | 1 | 0.04 | 4.7e-02 | -5.27 | 1.36e-07 | 0.05 | FALSE |
| Liver | Rpusd2 | gene expression | Rpusd2 | 0.05 | 138 | 0 | 9.4e-02 | -5.2 | 1.95e-07 | 0.59 | FALSE |
| Liver | C3h15orf62 | isoform ratio | NM_001399846.1 | 0.18 | 1 | 0.12 | 1.8e-13 | 5.29 | 1.20e-07 | 0.95 | FALSE |
| Liver | C3h15orf62 | isoform ratio | NM_001399847.1 | 0.2 | 1 | 0.13 | 4.5e-14 | -5.29 | 1.20e-07 | 0.95 | FALSE |
| NAcc | Plcb2 | alternative polyA | XM_063284733.1 | 0.27 | 1827 | 0.07 | 1.5e-10 | 5.28 | 1.30e-07 | 0.02 | FALSE |
| NAcc | Mga | alternative TSS | XM_008762120.4 | 0.01 | 1 | 0 | 5.0e-02 | -5.43 | 5.62e-08 | 0.04 | FALSE |
| NAcc | Pla2g4b | gene expression | Pla2g4b | 0.03 | 1 | 0.03 | 9.7e-06 | 5.32 | 1.03e-07 | 0.46 | FALSE |
| NAcc | Zfp106 | gene expression | Zfp106 | 0.04 | 1694 | 0.02 | 1.8e-04 | 5.62 | 1.92e-08 | 0.82 | FALSE |
| NAcc | Plcb2 | isoform ratio | NM_053478.2 | 0.14 | 1827 | 0.02 | 1.2e-03 | -5.27 | 1.36e-07 | 0.03 | TRUE |
| NAcc | Stard9 | isoform ratio | NM_001427830.1 | 0.03 | 19 | 0.01 | 2.4e-03 | -5.32 | 1.02e-07 | 0.84 | FALSE |
| NAcc | Ganc | intron excision ratio | chr3_127812058_127812306 | 0.55 | 162 | 0.17 | 1.4e-24 | 6.35 | 2.11e-10 | 0 | TRUE |
| NAcc | Pla2g4b | intron excision ratio | chr3_127458196_127460407 | 0.02 | 1 | 0.02 | 8.6e-04 | -5.32 | 1.03e-07 | 0.07 | FALSE |
| NAcc | Pla2g4b | intron excision ratio | chr3_127459119_127460407 | 0.02 | 1 | 0.01 | 2.3e-03 | 5.32 | 1.03e-07 | 0.08 | FALSE |
| NAcc | Pla2g4b | mRNA stability | Pla2g4b | 0.03 | 1 | 0.02 | 3.0e-04 | 5.31 | 1.07e-07 | 0.42 | FALSE |
| OFC | Sptbn5 | gene expression | Sptbn5 | 0.33 | 1 | 0.14 | 3.7e-04 | 5.25 | 1.48e-07 | 0.07 | FALSE |
| PL | Mga | alternative TSS | XM_063284962.1 | 0.03 | 194 | 0.01 | 3.4e-02 | 5.96 | 2.49e-09 | 0.41 | FALSE |
| PL | Jmjd7 | gene expression | Jmjd7 | 0.03 | 1503 | 0.03 | 1.1e-04 | 5.28 | 1.32e-07 | 0.71 | FALSE |
| PL | Mga | gene expression | Mga | 0.02 | 23 | 0.02 | 1.2e-03 | -5.32 | 1.02e-07 | 0.63 | FALSE |
| PL | Rpap1 | gene expression | Rpap1 | 0.15 | 1 | 0.22 | 1.1e-23 | -5.31 | 1.07e-07 | 0.67 | FALSE |
| PL | Sptbn5 | gene expression | Sptbn5 | 0.28 | 1462 | 0.35 | 2.3e-39 | 5.4 | 6.74e-08 | 0.69 | FALSE |
| PL | Mapkbp1 | isoform ratio | NM_001108589.1 | 0.02 | 1 | 0.01 | 2.9e-02 | 5.32 | 1.03e-07 | 0.05 | FALSE |
| PL | Sptbn5 | isoform ratio | XM_039106497.2 | 0.04 | 1 | 0.04 | 3.1e-05 | 5.32 | 1.04e-07 | 0.46 | FALSE |
| PL | Mapkbp1 | intron excision ratio | chr3_127437355_127437545 | 0.04 | 1 | 0.03 | 4.3e-04 | 5.31 | 1.07e-07 | 0.34 | FALSE |
| PL | Mapkbp1 | intron excision ratio | chr3_127437355_127437672 | 0.04 | 1 | 0.03 | 3.1e-04 | -5.31 | 1.07e-07 | 0.38 | FALSE |
| PL | Sptbn5 | intron excision ratio | chr3_127470972_127471250 | 0.02 | 23 | 0.02 | 5.2e-03 | 5.41 | 6.21e-08 | 0.65 | FALSE |
| pVTA | Zfyve19 | isoform ratio | XM_039105682.2 | 0.07 | 5 | 0.04 | 2.0e-04 | -5.27 | 1.33e-07 | 0.73 | FALSE |
| pVTA | Ganc | mRNA stability | Ganc | 0.48 | 122 | 0.1 | 1.6e-08 | 5.87 | 4.49e-09 | 0.11 | FALSE |
| RMTg | Mga | alternative TSS | XM_008762120.4 | 0.13 | 14 | 0.1 | 1.2e-03 | -5.34 | 9.10e-08 | 0.62 | FALSE |
| RMTg | Mga | isoform ratio | XM_008762120.4 | 0.11 | 120 | 0.06 | 1.4e-02 | -5.32 | 1.02e-07 | 0.51 | FALSE |