chr5:125,953,035-130,343,457

Trait: Left kidney weight

Best TWAS P = 9.98e-09 · Best GWAS P= 2.42e-08 conditioned to 1.00e+00

Associated models

Tissue Gene RNA modality RNA phenotype h2 # weights Model R2 Model R2 P TWAS Z TWAS P Coloc P Joint
Adipose Czib alternative TSS XM_063287396.1 0.02 7 0 9.8e-02 5.24 1.57e-07 0.28 FALSE
Adipose Podn alternative TSS XM_039111168.2 0.03 1928 0.01 3.5e-02 -5.45 5.13e-08 0.2 FALSE
Adipose Podn alternative TSS XM_039111165.2 0.03 1928 0.01 8.6e-03 5.49 4.06e-08 0.33 FALSE
Adipose Podn alternative TSS XM_039111168.2 0.03 1928 0.01 3.0e-02 -5.41 6.29e-08 0.18 FALSE
Adipose Cdkn2c gene expression Cdkn2c 0.1 1231 0.04 1.5e-05 5.3 1.17e-07 0.57 FALSE
Adipose Czib gene expression Czib 0.05 1 0.02 2.0e-03 -5.28 1.29e-07 0.04 FALSE
Adipose Ift25 gene expression Ift25 0.1 2119 0.06 3.2e-07 5.55 2.79e-08 0.35 TRUE
Adipose LOC134486965 gene expression LOC134486965 0.12 39 0.07 1.7e-08 5.22 1.78e-07 0.45 FALSE
Adipose Ttc4 gene expression Ttc4 0.04 1528 0.01 9.1e-03 -5.54 3.05e-08 0.45 FALSE
Adipose Eps15 isoform ratio NR_158458.2 0.05 1337 0.02 9.9e-04 5.36 8.15e-08 0.47 FALSE
Adipose LOC108351012 isoform ratio XR_010066579.1 0.04 1 0.01 7.4e-03 5.29 1.23e-07 0.03 FALSE
Adipose Podn isoform ratio XM_039111163.2 0.06 1 0.04 1.2e-05 -5.5 3.90e-08 0.56 FALSE
Adipose Nrdc intron excision ratio chr5_129001470_129005390 0.02 2 0.01 4.4e-02 -5.37 7.80e-08 0.26 FALSE
Adipose Echdc2 mRNA stability Echdc2 0.03 1 0.01 1.4e-02 5.36 8.21e-08 0.03 FALSE
Adipose Ndc1 mRNA stability Ndc1 0.03 1 0.01 2.5e-02 5.44 5.22e-08 0.04 FALSE
Adipose Ssbp3 mRNA stability Ssbp3 0.03 54 0.01 5.7e-02 -5.73 9.98e-09 0.28 TRUE
BLA Czib alternative TSS NM_001034132.1 0.13 26 0.11 1.5e-06 5.43 5.75e-08 0.47 FALSE
BLA Czib alternative TSS XM_008763867.3 0.12 1 0.12 8.8e-07 -5.42 6.11e-08 0.45 FALSE
BLA Ift25 alternative TSS XM_006238524.5 0.06 1 0.04 5.7e-03 -5.43 5.54e-08 0.05 FALSE
BLA LOC134486963 gene expression LOC134486963 0.2 34 0.15 3.2e-08 -5.22 1.76e-07 0.48 FALSE
BLA Lrp8 gene expression Lrp8 0.23 1 0.25 1.1e-13 -5.54 3.00e-08 0.78 FALSE
BLA Txndc12 gene expression Txndc12 0.19 17 0.16 1.2e-08 5.22 1.79e-07 0.47 FALSE
BLA Czib isoform ratio NM_001034132.1 0.13 1 0.13 2.7e-07 5.42 6.11e-08 0.54 FALSE
BLA Gpx7 intron excision ratio chr5_128377129_128377541 0.12 1 0.09 3.0e-05 -5.22 1.74e-07 0.12 FALSE
BLA Czib mRNA stability Czib 0.07 2126 0.04 5.3e-03 -5.64 1.66e-08 0.34 FALSE
Brain Yipf1 alternative polyA NM_199383.2 0.05 1 0.04 2.8e-04 -5.28 1.29e-07 0.09 FALSE
Brain Zfyve9 alternative polyA NM_001107952.1 0.02 1 0.01 2.8e-02 5.22 1.80e-07 0.04 FALSE
Brain Zfyve9 alternative polyA NM_001107952.1 0.02 1 0.02 7.2e-03 5.22 1.80e-07 0.04 FALSE
Brain Calr4 alternative TSS XM_063288592.1 0.03 1328 0.03 1.6e-03 -5.32 1.03e-07 0.46 FALSE
Brain Calr4 alternative TSS XM_063288592.1 0.03 1328 0.03 1.9e-03 -5.27 1.34e-07 0.45 FALSE
Brain Lrp8 alternative TSS XM_039111160.2 0.04 2231 0.01 1.4e-02 -5.4 6.68e-08 0.35 FALSE
Brain Ttc4 alternative TSS NM_001395043.1 0.1 1528 0.13 9.4e-12 -5.27 1.36e-07 0.62 FALSE
Brain Ttc4 alternative TSS XM_039110294.2 0.1 1528 0.13 8.0e-12 5.26 1.44e-07 0.62 FALSE
Brain LOC120102944 gene expression LOC120102944 0.04 1587 0.02 3.5e-03 -5.56 2.73e-08 0.37 FALSE
Brain Scp2 gene expression Scp2 0.16 1805 0.24 1.2e-22 -5.4 6.55e-08 0.48 FALSE
Brain Zfyve9 gene expression Zfyve9 0.03 1 0.02 5.9e-03 5.21 1.87e-07 0.04 FALSE
Brain Zyg11b gene expression Zyg11b 0.1 1520 0.11 4.2e-10 -5.35 8.86e-08 0.5 FALSE
Brain Czib isoform ratio XM_008763867.3 0.06 1 0.08 6.9e-08 -5.3 1.18e-07 0.48 FALSE
Brain Gpx7 intron excision ratio chr5_128377129_128377541 0.06 1618 0.06 7.4e-06 -5.34 9.41e-08 0.47 FALSE
Brain Lrp8 intron excision ratio chr5_127856431_127859639 0.03 1 0.03 5.1e-04 5.32 1.05e-07 0.06 FALSE
Brain Acot11 mRNA stability Acot11 0.13 1656 0.16 3.4e-15 -5.39 7.16e-08 0.59 FALSE
Brain Czib mRNA stability Czib 0.03 2126 0.02 5.0e-03 -5.46 4.66e-08 0.44 FALSE
Brain Rab3b mRNA stability Rab3b 0.02 1 0.02 3.2e-03 -5.21 1.85e-07 0.04 TRUE
Eye Eps15 gene expression Eps15 0.27 46 0.17 1.4e-03 -5.38 7.43e-08 0.3 FALSE
Eye Lrrc42 mRNA stability Lrrc42 0.43 1 0.18 9.9e-04 -5.28 1.29e-07 0.06 FALSE
IC Txndc12 alternative TSS NM_001100840.1 0.14 1381 0.11 2.1e-05 5.21 1.84e-07 0.48 FALSE
IC Txndc12 alternative TSS NM_001100840.1 0.12 1381 0.1 5.9e-05 5.26 1.46e-07 0.48 FALSE
IC Txndc12 alternative TSS XM_063287392.1 0.13 1381 0.1 4.0e-05 -5.28 1.32e-07 0.48 FALSE
IC Calr4 gene expression Calr4 0.11 1328 0.08 4.4e-04 5.38 7.28e-08 0.49 FALSE
IC Cdcp2 gene expression Cdcp2 0.13 2042 0.09 1.6e-04 -5.36 8.40e-08 0.3 FALSE
IC Cpt2 gene expression Cpt2 0.08 2051 0.03 2.1e-02 -5.72 1.09e-08 0.3 FALSE
IC Echdc2 gene expression Echdc2 0.12 1 0.06 1.3e-03 -5.5 3.90e-08 0.1 FALSE
IC Podn gene expression Podn 0.22 1 0.21 3.2e-09 -5.38 7.44e-08 0.59 FALSE
IC Scp2 gene expression Scp2 0.28 8 0.32 3.1e-14 -5.34 9.15e-08 0.39 TRUE
IC Zyg11b gene expression Zyg11b 0.12 1520 0.1 7.8e-05 -5.35 8.83e-08 0.47 FALSE
IC Zfyve9 isoform ratio XM_063287712.1 0.1 1 0.04 5.9e-03 -5.3 1.13e-07 0.05 FALSE
IC Gpx7 intron excision ratio chr5_128377129_128377541 0.08 1618 0.04 5.6e-03 -5.32 1.02e-07 0.42 FALSE
IC Ttc39a mRNA stability Ttc39a 0.07 1 0.07 8.2e-04 5.29 1.20e-07 0.05 FALSE
IL Kti12 gene expression Kti12 0.2 1 0.08 6.6e-03 5.21 1.87e-07 0.05 FALSE
IL Podn gene expression Podn 0.21 1 0.1 1.9e-03 -5.42 6.11e-08 0.06 FALSE
IL Zyg11b gene expression Zyg11b 0.2 1 0.05 2.1e-02 -5.24 1.58e-07 0.05 FALSE
IL Eps15 intron excision ratio chr5_129350974_129353588 0.21 1 0.09 4.6e-03 -5.29 1.23e-07 0.06 FALSE
LHb Fam151a gene expression Fam151a 0.19 1488 0.07 1.1e-02 -5.32 1.03e-07 0.42 FALSE
Liver Calr4 alternative TSS XM_063288592.1 0.03 1328 0.01 4.3e-02 -5.38 7.46e-08 0.25 FALSE
Liver Calr4 alternative TSS XM_063288592.1 0.04 1 0.01 1.2e-02 -5.22 1.81e-07 0.03 FALSE
Liver Osbpl9 alternative TSS XM_039109559.2 0.04 51 0.01 3.0e-02 5.25 1.52e-07 0.22 TRUE
Liver Txndc12 alternative TSS NM_001100840.1 0.19 85 0.11 3.5e-12 5.39 7.08e-08 0.45 FALSE
Liver Txndc12 alternative TSS NM_001100840.1 0.19 87 0.11 3.9e-12 5.4 6.82e-08 0.45 FALSE
Liver Txndc12 alternative TSS XM_063287392.1 0.18 83 0.11 3.8e-12 -5.4 6.73e-08 0.45 FALSE
Liver Dio1 gene expression Dio1 0.11 1 0.05 4.3e-06 -5.32 1.04e-07 0.53 FALSE
Liver Ssbp3 gene expression Ssbp3 0.12 1787 0.07 1.3e-08 -5.34 9.45e-08 0.52 FALSE
Liver Zyg11a gene expression Zyg11a 0.03 1697 0.01 7.1e-03 -5.4 6.49e-08 0.37 FALSE
Liver Echdc2 isoform ratio NM_001106675.1 0.03 1 0.01 1.6e-02 5.28 1.29e-07 0.03 FALSE
Liver Czib intron excision ratio chr5_127877560_127878881 0.11 1 0.09 7.2e-10 5.44 5.22e-08 0.68 FALSE
Liver Czib intron excision ratio chr5_127877688_127878881 0.11 1 0.09 4.0e-10 -5.44 5.22e-08 0.68 FALSE
Liver Czib mRNA stability Czib 0.02 2126 -0 3.5e-01 -5.54 2.99e-08 0.25 FALSE
Liver Echdc2 mRNA stability Echdc2 0.11 1719 0.08 7.3e-09 5.33 9.79e-08 0.43 FALSE
Liver Rnf11 mRNA stability Rnf11 0.07 102 0.03 2.0e-04 -5.29 1.20e-07 0.5 FALSE
NAcc Yipf1 alternative polyA NM_199383.2 0.07 1 0.03 2.3e-05 -5.23 1.69e-07 0.51 FALSE
NAcc Yipf1 alternative polyA XM_006238504.5 0.03 1 0.03 6.5e-05 5.5 3.90e-08 0.62 FALSE
NAcc Yipf1 alternative polyA NM_199383.2 0.09 1 0.04 3.1e-06 -5.28 1.27e-07 0.6 FALSE
NAcc Yipf1 alternative polyA XM_006238504.5 0.04 1 0.04 3.4e-07 5.5 3.90e-08 0.81 FALSE
NAcc Calr4 alternative TSS XM_063288592.1 0.03 6 0.04 2.6e-06 -5.32 1.04e-07 0.49 FALSE
NAcc Calr4 alternative TSS XM_063288592.1 0.04 1327 0.04 1.8e-06 -5.36 8.22e-08 0.51 FALSE
NAcc Czib alternative TSS NM_001034132.1 0.02 1 0.02 1.8e-04 5.42 6.11e-08 0.22 FALSE
NAcc Czib alternative TSS XM_008763867.3 0.04 1 0.04 2.9e-07 -5.42 6.11e-08 0.64 FALSE
NAcc Ssbp3 alternative TSS XM_039110873.2 0.04 1787 0.03 2.1e-05 -5.31 1.11e-07 0.11 FALSE
NAcc Txndc12 alternative TSS NM_001100840.1 0.06 11 0.07 7.0e-11 5.4 6.54e-08 0.49 FALSE
NAcc Txndc12 alternative TSS NM_001100840.1 0.06 3 0.08 1.4e-11 5.35 8.87e-08 0.48 FALSE
NAcc Txndc12 alternative TSS XM_063287392.1 0.07 2 0.08 1.3e-12 -5.21 1.93e-07 0.47 FALSE
NAcc Btf3l4 gene expression Btf3l4 0.05 1379 0.06 1.2e-09 5.25 1.49e-07 0.48 FALSE
NAcc Calr4 gene expression Calr4 0.06 8 0.07 5.4e-11 5.37 7.87e-08 0.49 FALSE
NAcc Glis1 gene expression Glis1 0.02 1 0.02 1.4e-03 -5.28 1.29e-07 0.33 TRUE
NAcc Gpx7 gene expression Gpx7 0.08 1615 0.09 9.3e-14 5.33 9.80e-08 0.46 FALSE
NAcc Lrp8 gene expression Lrp8 0.17 1 0.27 1.8e-41 -5.42 6.11e-08 0.65 FALSE
NAcc Nrdc gene expression Nrdc 0.04 1381 0.04 4.9e-06 -5.36 8.38e-08 0.5 FALSE
NAcc Scp2 gene expression Scp2 0.09 106 0.13 1.3e-19 -5.36 8.27e-08 0.44 FALSE
NAcc Czib isoform ratio NM_001034132.1 0.06 1 0.07 5.0e-11 5.58 2.42e-08 0.81 FALSE
NAcc Yipf1 isoform ratio XM_006238504.5 0.05 1 0.05 1.0e-07 5.5 3.90e-08 0.82 FALSE
NAcc Podn intron excision ratio chr5_128023182_128024449 0.03 1 0.04 1.0e-06 5.32 1.01e-07 0.48 FALSE
NAcc Czib mRNA stability Czib 0.03 1 0.03 5.8e-06 -5.5 3.90e-08 0.7 FALSE
NAcc Ttc39a mRNA stability Ttc39a 0.03 1 0.04 1.0e-06 5.39 7.07e-08 0.74 FALSE
NAcc Tut4 mRNA stability Tut4 0.04 1 0.04 2.6e-06 -5.23 1.67e-07 0.5 FALSE
OFC Podn gene expression Podn 0.39 263 0.15 2.5e-04 -5.72 1.06e-08 0.45 FALSE
OFC Rnf11 gene expression Rnf11 0.17 1190 0.05 3.0e-02 -5.37 7.72e-08 0.35 FALSE
OFC Scp2 gene expression Scp2 0.24 1 0.15 1.8e-04 -5.42 6.11e-08 0.06 FALSE
OFC Ift25 intron excision ratio chr5_127270828_127272933 0.23 2119 0.07 8.1e-03 -5.54 3.02e-08 0.25 FALSE
PL Calr4 alternative TSS XM_063288592.1 0.03 1327 0.03 1.4e-04 -5.39 7.24e-08 0.5 FALSE
PL Calr4 alternative TSS XM_063288592.1 0.04 1327 0.04 2.1e-05 -5.37 8.02e-08 0.5 FALSE
PL Ift25 alternative TSS XM_006238524.5 0.07 20 0.08 2.7e-09 -5.37 7.91e-08 0.03 FALSE
PL Ift25 alternative TSS XM_008763899.4 0.07 83 0.07 8.4e-08 5.33 9.74e-08 0.42 FALSE
PL Ift25 alternative TSS XM_006238524.5 0.1 117 0.11 3.4e-12 -5.59 2.29e-08 0.23 FALSE
PL Cdcp2 gene expression Cdcp2 0.09 48 0.09 1.8e-10 -5.54 3.04e-08 0.36 FALSE
PL Ift25 gene expression Ift25 0.02 19 0 1.3e-01 -5.69 1.30e-08 0.44 FALSE
PL LOC134486963 gene expression LOC134486963 0.04 5 0.03 1.7e-04 -5.27 1.37e-07 0.52 FALSE
PL Podn gene expression Podn 0.13 1 0.08 3.9e-09 -5.22 1.74e-07 0.39 FALSE
PL Scp2 gene expression Scp2 0.2 1758 0.27 3.2e-29 -5.3 1.13e-07 0.36 FALSE
PL Zfyve9 gene expression Zfyve9 0.04 12 0.02 1.4e-03 5.46 4.65e-08 0.48 FALSE
PL Zyg11b gene expression Zyg11b 0.05 1517 0.05 6.7e-06 -5.33 1.01e-07 0.48 FALSE
PL Osbpl9 intron excision ratio chr5_129119623_129147542 0.03 338 0.01 2.5e-02 5.24 1.64e-07 0.4 FALSE
PL Zfyve9 intron excision ratio chr5_128668858_128672853 0.06 1 0.05 2.5e-06 -5.21 1.94e-07 0.48 FALSE
PL Scp2 mRNA stability Scp2 0.02 1 0.02 1.6e-03 -5.28 1.29e-07 0.06 FALSE
pVTA Orc1 alternative polyA XM_039109968.2 0.03 993 0.02 4.3e-03 -5.32 1.02e-07 0.37 FALSE
pVTA Orc1 alternative polyA XM_006238515.5 0.27 6 0.03 3.9e-03 5.23 1.73e-07 0.39 FALSE
pVTA Yipf1 alternative polyA NM_199383.2 0.03 2055 0.02 1.5e-02 -5.59 2.30e-08 0.32 FALSE
pVTA Btf3l4 gene expression Btf3l4 0.05 1011 0.03 2.0e-03 5.25 1.55e-07 0.45 FALSE
pVTA Dmrtb1 gene expression Dmrtb1 0.06 1 0.07 3.2e-06 5.38 7.44e-08 0.44 FALSE
pVTA Echdc2 gene expression Echdc2 0.04 1357 0.02 8.8e-03 -5.37 8.05e-08 0.39 FALSE
pVTA Eps15 gene expression Eps15 0.03 1 0.01 4.6e-02 -5.29 1.23e-07 0.04 FALSE
pVTA Fam151a gene expression Fam151a 0.11 21 0.12 3.7e-10 -5.28 1.30e-07 0.57 FALSE
pVTA Kti12 gene expression Kti12 0.04 1 0.04 3.0e-04 5.24 1.60e-07 0.05 FALSE
pVTA LOC134486963 gene expression LOC134486963 0.12 965 0.07 4.9e-06 -5.23 1.72e-07 0.54 FALSE
pVTA Osbpl9 gene expression Osbpl9 0.08 1 0.05 5.3e-05 5.29 1.20e-07 0.52 FALSE
pVTA Zyg11b gene expression Zyg11b 0.06 1139 0.05 4.3e-05 -5.35 8.81e-08 0.48 FALSE
pVTA Gpx7 intron excision ratio chr5_128377129_128377541 0.05 12 0.04 2.9e-04 -5.23 1.71e-07 0.46 FALSE
pVTA Osbpl9 intron excision ratio chr5_129119623_129120517 0.03 1 0.03 8.4e-04 -5.23 1.72e-07 0.04 FALSE
pVTA Eps15 mRNA stability Eps15 0.04 1 0.03 3.1e-03 -5.29 1.20e-07 0.04 FALSE
pVTA Rab3b mRNA stability Rab3b 0.05 995 0.04 2.0e-04 -5.34 9.08e-08 0.5 FALSE
pVTA Ttc39a mRNA stability Ttc39a 0.07 1 0.02 4.5e-03 5.29 1.20e-07 0.06 FALSE
RMTg Orc1 alternative TSS NM_177931.2 0.15 993 0.05 2.1e-02 -5.3 1.13e-07 0.22 FALSE