chr2:91,571,130-96,055,722

Trait: Extensor digitorum longus weight

Best TWAS P = 2.61e-14 · Best GWAS P= 2.61e-14 conditioned to 1.00e+00

Associated models

Tissue Gene RNA modality RNA phenotype h2 # weights Model R2 Model R2 P TWAS Z TWAS P Coloc P Joint
Adipose Tpd52 alternative polyA NM_001401807.1 0.03 1 0.01 1.3e-02 7.62 2.61e-14 0.03 TRUE
Adipose Tpd52 alternative polyA XM_063281536.1 0.03 1 0.01 1.1e-02 -7.62 2.61e-14 0.03 FALSE
Adipose Fabp4 alternative TSS NM_053365.3 0.18 1 0.11 3.7e-12 6.69 2.16e-11 0.16 FALSE
Adipose Fabp4 alternative TSS XM_063282611.1 0.17 1 0.11 6.5e-12 -7.18 6.92e-13 0.85 FALSE
Adipose Fabp9 alternative TSS NM_022854.2 0.02 1927 0 1.1e-01 -5.99 2.12e-09 0.23 FALSE
Adipose Snx16 alternative TSS XM_006232135.5 0.12 1 0.06 1.8e-07 -6.87 6.40e-12 0.32 FALSE
Adipose Snx16 alternative TSS NM_022289.3 0.06 1 0.02 1.4e-03 6.87 6.40e-12 0.05 FALSE
Adipose Snx16 alternative TSS XM_006232135.5 0.06 1 0.02 1.4e-03 -6.87 6.40e-12 0.05 FALSE
Adipose Fabp12 gene expression Fabp12 0.1 1 0.06 7.1e-07 6.89 5.55e-12 0.35 FALSE
Adipose LOC102553210 gene expression LOC102553210 0.13 2179 0.09 3.3e-10 6.69 2.18e-11 0.58 FALSE
Adipose LOC103691511 isoform ratio XR_010064176.1 0.03 1 0.02 3.1e-03 7.18 6.92e-13 0.03 FALSE
Adipose Snx16 intron excision ratio chr2_93262273_93263955 0.04 2093 0.02 2.1e-03 -5.94 2.85e-09 0.41 FALSE
Adipose Fabp4 mRNA stability Fabp4 0.08 1 0.04 1.0e-05 -7.18 6.92e-13 0.78 FALSE
Adipose Impa1 mRNA stability Impa1 0.48 2022 0.14 1.3e-15 5.38 7.29e-08 0 FALSE
Adipose LOC103691511 mRNA stability LOC103691511 0.09 1 0.05 2.7e-06 5.42 5.88e-08 0.01 FALSE
Adipose LOC120093158 mRNA stability LOC120093158 0.13 1 0.09 1.2e-09 -6.87 6.40e-12 0.34 FALSE
BLA Fabp12 gene expression Fabp12 0.11 318 0.06 2.3e-04 5.21 1.86e-07 0.2 FALSE
BLA Fabp4 gene expression Fabp4 0.42 23 0.27 1.1e-14 6.57 5.15e-11 0.42 FALSE
BLA Fabp5 gene expression Fabp5 0.21 1 0.12 1.1e-06 -6.51 7.36e-11 0.04 FALSE
BLA LOC120093158 gene expression LOC120093158 0.14 1 0.08 4.0e-05 5.24 1.60e-07 0.04 FALSE
BLA Pag1 gene expression Pag1 0.09 1 0.04 2.4e-03 6.51 7.53e-11 0.04 FALSE
BLA Pmp2 gene expression Pmp2 0.09 1 0.03 8.4e-03 -6.55 5.94e-11 0.04 FALSE
BLA Tpd52 gene expression Tpd52 0.24 1 0.12 8.1e-07 5.67 1.44e-08 0 FALSE
BLA Impa1 mRNA stability Impa1 0.07 1 0.02 4.0e-02 -6.57 4.93e-11 0.04 FALSE
Brain Zfp704 alternative TSS XM_039103595.2 0.03 1 0.01 4.4e-02 6.73 1.72e-11 0.03 FALSE
Brain Zfp704 alternative TSS XM_039103596.2 0.03 1 0.02 1.1e-02 -6.73 1.72e-11 0.03 FALSE
Brain Fabp4 gene expression Fabp4 0.18 1 0.1 1.9e-09 -6.51 7.35e-11 0.06 FALSE
Brain Fabp5 gene expression Fabp5 0.22 1 0.13 1.5e-12 -7 2.63e-12 0.48 FALSE
Brain LOC120093158 gene expression LOC120093158 0.11 1 0.02 3.8e-03 6.74 1.59e-11 0.03 FALSE
Brain Pag1 gene expression Pag1 0.05 1 0.03 6.6e-04 6.69 2.16e-11 0.03 FALSE
Brain Zbtb10 gene expression Zbtb10 0.17 2399 0.09 7.2e-09 6.33 2.47e-10 0.63 FALSE
Brain Snx16 isoform ratio XM_006232135.5 0.06 2093 0.04 6.8e-05 -5.52 3.35e-08 0.39 FALSE
Brain Tpd52 isoform ratio XM_063281545.1 0.04 1 0.01 2.6e-02 7.53 5.17e-14 0.04 FALSE
Brain Zfp704 isoform ratio XM_039103595.2 0.04 2077 0.01 6.8e-02 -6.98 2.90e-12 0.27 FALSE
Brain Snx16 intron excision ratio chr2_93262273_93263955 0.13 2093 0.08 9.1e-08 -6.22 4.85e-10 0.56 FALSE
Brain Tpd52 intron excision ratio chr2_94712027_94720312 0.04 2151 0.01 3.4e-02 5.38 7.50e-08 0.26 FALSE
Brain Tpd52 intron excision ratio chr2_94713077_94719048 0.04 1 0.02 4.9e-03 7.48 7.22e-14 0.04 FALSE
Brain Impa1 mRNA stability Impa1 0.32 35 0.11 3.9e-10 -5.3 1.18e-07 0.54 FALSE
Brain Mrps28 mRNA stability Mrps28 0.08 2085 0.03 7.9e-04 7.33 2.33e-13 0.55 FALSE
Brain Tpd52 mRNA stability Tpd52 0.35 13 0.21 1.1e-19 -7.14 9.29e-13 0.58 FALSE
Brain Zfp704 mRNA stability Zfp704 0.05 1 0.04 1.9e-04 7.05 1.76e-12 0.03 FALSE
Eye LOC108349981 gene expression LOC108349981 0.61 1 0.34 3.0e-06 -5.26 1.46e-07 0.05 FALSE
Eye Fabp12 intron excision ratio chr2_93408057_93449086 0.25 1 0.12 6.7e-03 5.3 1.17e-07 0.06 FALSE
Eye LOC120093158 intron excision ratio chr2_93408057_93449086 0.26 1 0.12 6.7e-03 5.36 8.14e-08 0.06 FALSE
Eye Tpd52 intron excision ratio chr2_94712027_94719048 0.38 2 0.16 1.9e-03 5.81 6.41e-09 0.21 FALSE
Eye Tpd52 intron excision ratio chr2_94712027_94720312 0.35 33 0.06 4.8e-02 -7.47 7.89e-14 0.27 FALSE
Eye Mrps28 mRNA stability Mrps28 0.36 13 0.25 9.7e-05 5.61 2.01e-08 0.25 FALSE
Eye Tpd52 mRNA stability Tpd52 0.67 14 0.3 1.8e-05 -5.57 2.53e-08 0.15 FALSE
IC Fabp4 gene expression Fabp4 0.1 1 0.05 3.2e-03 -7.1 1.22e-12 0.06 FALSE
IC Fabp5 gene expression Fabp5 0.56 276 0.29 7.4e-13 -6.3 3.04e-10 0.2 FALSE
IC Hey1 gene expression Hey1 0.12 1 0.09 1.6e-04 -7.49 6.93e-14 0.07 FALSE
IC LOC102553210 gene expression LOC102553210 0.11 15 0.02 3.5e-02 -6.99 2.70e-12 0.39 FALSE
IC LOC108349981 gene expression LOC108349981 0.12 1 0.06 2.2e-03 -5.22 1.81e-07 0.04 FALSE
IC Mrps28 gene expression Mrps28 0.14 1 0.06 1.9e-03 -7.48 7.63e-14 0.06 FALSE
IC Stmn2 gene expression Stmn2 0.24 1 0.11 2.9e-05 5.43 5.68e-08 0.04 FALSE
IC Zfand1 isoform ratio XM_063282037.1 0.13 1 0.1 3.8e-05 5.29 1.25e-07 0.04 FALSE
IC Tpd52 mRNA stability Tpd52 0.22 2151 0.1 5.2e-05 -5.42 5.91e-08 0.02 TRUE
IL Tgap1 alternative TSS XM_039101957.2 1 1 0.01 2.3e-01 -6.03 1.66e-09 0.05 FALSE
IL Fabp4 gene expression Fabp4 0.71 1955 0.06 1.3e-02 7.33 2.38e-13 0.62 FALSE
IL Fabp5 gene expression Fabp5 0.31 2131 0.1 1.8e-03 6.74 1.57e-11 0.32 FALSE
IL LOC134485606 gene expression LOC134485606 0.34 60 0.05 2.4e-02 -6.07 1.29e-09 0.11 FALSE
IL Tpd52 mRNA stability Tpd52 0.55 4 0.31 3.9e-08 -7.22 5.03e-13 0.59 FALSE
LHb LOC134485606 gene expression LOC134485606 0.68 286 0.17 6.1e-05 -5.9 3.57e-09 0.08 FALSE
LHb Stmn2 gene expression Stmn2 0.34 46 0.09 4.7e-03 7.14 9.35e-13 0.2 FALSE
LHb Tpd52 gene expression Tpd52 0.37 98 0.16 1.6e-04 7.31 2.63e-13 0.56 FALSE
LHb Impa1 mRNA stability Impa1 0.48 1 0.1 2.2e-03 -6.87 6.40e-12 0.05 FALSE
LHb Tpd52 mRNA stability Tpd52 0.47 9 0.21 9.7e-06 7.15 8.94e-13 0.56 FALSE
Liver Fabp12 gene expression Fabp12 0.72 355 0.48 2.8e-60 5.45 4.92e-08 0 FALSE
Liver Fabp5 gene expression Fabp5 0.05 112 0.02 1.1e-03 -5.96 2.53e-09 0.4 FALSE
Liver LOC134485605 gene expression LOC134485605 0.05 2120 0.03 8.1e-04 6.3 2.93e-10 0.16 FALSE
Liver Zbtb10 gene expression Zbtb10 0.04 1 0.02 4.9e-03 -6.51 7.59e-11 0.03 FALSE
Liver Zfand1 gene expression Zfand1 0.02 1 0.02 5.6e-03 7.24 4.36e-13 0.04 TRUE
Liver Fabp12 intron excision ratio chr2_93410626_93419071 0.65 15 0.46 1.9e-56 5.69 1.25e-08 0 FALSE
Liver Fabp12 intron excision ratio chr2_93410626_93456552 0.46 1 0.29 2.0e-32 5.42 5.88e-08 0 FALSE
Liver Fabp12 intron excision ratio chr2_93456672_93458264 0.45 172 0.33 9.3e-38 5.41 6.22e-08 0 FALSE
Liver Fabp12 intron excision ratio chr2_93458436_93460630 0.49 312 0.35 4.8e-40 5.88 4.00e-09 0 FALSE
Liver LOC120093158 intron excision ratio chr2_93410626_93419071 0.66 10 0.46 4.5e-57 5.37 7.69e-08 0 FALSE
Liver LOC120093158 intron excision ratio chr2_93410626_93456552 0.45 1 0.29 2.0e-32 5.42 5.88e-08 0 FALSE
Liver LOC120093158 intron excision ratio chr2_93456672_93458264 0.46 167 0.33 3.4e-37 5.41 6.24e-08 0 FALSE
Liver LOC120093158 intron excision ratio chr2_93458436_93460630 0.49 352 0.35 5.1e-40 5.78 7.59e-09 0 FALSE
Liver Chmp4c mRNA stability Chmp4c 0.04 2043 0.02 1.5e-03 -5.63 1.80e-08 0.38 FALSE
Liver LOC120093158 mRNA stability LOC120093158 0.55 4 0.37 1.8e-43 5.24 1.65e-07 0 FALSE
Liver Pag1 mRNA stability Pag1 0.04 2196 0.02 2.4e-03 -5.88 4.10e-09 0.17 FALSE
Liver Tpd52 mRNA stability Tpd52 0.12 1 0.06 4.4e-07 7.24 4.65e-13 0.21 FALSE
NAcc Fabp12 gene expression Fabp12 0.08 1 0.05 9.7e-08 5.29 1.19e-07 0 FALSE
NAcc Fabp4 gene expression Fabp4 0.15 48 0.17 4.2e-25 -7.08 1.39e-12 0.66 FALSE
NAcc Fabp5 gene expression Fabp5 0.03 2131 0.02 2.2e-04 5.87 4.40e-09 0.42 FALSE
NAcc LOC120093158 gene expression LOC120093158 0.03 31 0.02 2.1e-04 6.49 8.42e-11 0.38 FALSE
NAcc Mrps28 gene expression Mrps28 0.02 2085 0.01 3.9e-03 5.57 2.59e-08 0.29 FALSE
NAcc Pag1 gene expression Pag1 0.14 22 0.17 6.8e-25 -6.87 6.28e-12 0.14 FALSE
NAcc Pmp2 gene expression Pmp2 0.07 1 0.06 1.3e-09 -6.51 7.59e-11 0.06 FALSE
NAcc Stmn2 gene expression Stmn2 0.02 1 0.02 1.1e-03 -6.73 1.67e-11 0.02 TRUE
NAcc Tpd52 gene expression Tpd52 0.06 4 0.06 5.8e-09 -6.97 3.12e-12 0.02 TRUE
NAcc Zbtb10 gene expression Zbtb10 0.13 50 0.11 1.1e-16 7.15 8.88e-13 0.66 FALSE
NAcc Snx16 isoform ratio XM_006232135.5 0.02 21 0.02 1.9e-04 5.88 4.21e-09 0.55 FALSE
NAcc Snx16 intron excision ratio chr2_93262273_93263955 0.08 4 0.07 5.0e-11 -7.12 1.05e-12 0.61 FALSE
NAcc Snx16 intron excision ratio chr2_93262871_93263955 0.02 2093 0.01 3.1e-03 6.24 4.49e-10 0.32 FALSE
NAcc Impa1 mRNA stability Impa1 0.11 68 0.06 2.3e-09 -6.26 3.75e-10 0.26 FALSE
NAcc Tpd52 mRNA stability Tpd52 0.2 38 0.24 2.8e-35 6.91 4.81e-12 0.3 FALSE
OFC Fabp4 gene expression Fabp4 0.41 1 0.14 4.3e-04 -6.89 5.73e-12 0.05 FALSE
OFC Fabp5 gene expression Fabp5 0.39 2131 0.12 9.9e-04 6.81 9.54e-12 0.53 FALSE
OFC LOC134485606 gene expression LOC134485606 0.3 1 0.07 1.1e-02 -5.49 3.97e-08 0.05 FALSE
OFC Mrps28 gene expression Mrps28 0.39 19 0.19 2.7e-05 -6.68 2.36e-11 0.61 FALSE
OFC Tpd52 gene expression Tpd52 0.44 202 0.09 4.5e-03 6.7 2.11e-11 0.32 FALSE
OFC Zbtb10 gene expression Zbtb10 0.27 1 0.08 5.8e-03 -7.27 3.68e-13 0.05 FALSE
OFC Tpd52 mRNA stability Tpd52 0.36 289 0.13 6.2e-04 6.99 2.68e-12 0.41 FALSE
PL Fabp4 gene expression Fabp4 0.44 105 0.34 8.0e-38 -7.09 1.37e-12 0.68 FALSE
PL Fabp5 gene expression Fabp5 0.4 165 0.32 4.4e-36 -7.01 2.34e-12 0.4 FALSE
PL Hey1 gene expression Hey1 0.16 1 0.05 5.9e-06 -7.47 8.11e-14 0.62 FALSE
PL LOC102553210 gene expression LOC102553210 0.03 1 0.02 3.5e-03 6.24 4.42e-10 0.03 FALSE
PL Mrps28 gene expression Mrps28 0.14 1 0.08 7.6e-09 -7.05 1.76e-12 0.07 FALSE
PL Pmp2 gene expression Pmp2 0.09 18 0.06 7.2e-07 7.03 2.04e-12 0.6 FALSE
PL Zbtb10 gene expression Zbtb10 0.08 2399 0.04 7.7e-05 7 2.61e-12 0.64 FALSE
PL Snx16 isoform ratio XM_006232135.5 0.02 2093 0.01 1.6e-02 -6.44 1.21e-10 0.34 FALSE
PL Snx16 intron excision ratio chr2_93262273_93263955 0.11 1 0.07 2.8e-08 7.09 1.30e-12 0.7 FALSE
PL Impa1 mRNA stability Impa1 0.15 1 0.1 6.0e-11 -5.24 1.60e-07 0 FALSE
PL Mrps28 mRNA stability Mrps28 0.09 1 0.03 1.3e-04 -5.66 1.53e-08 0.01 FALSE
PL Tpd52 mRNA stability Tpd52 0.35 23 0.24 3.9e-26 -6.78 1.18e-11 0.01 FALSE
pVTA Fabp12 alternative TSS XM_006232145.5 0.03 1953 0.02 9.9e-03 -6.42 1.35e-10 0.33 FALSE
pVTA Fabp4 gene expression Fabp4 0.1 57 0.11 3.2e-09 -6.63 3.32e-11 0.46 FALSE
pVTA Impa1 gene expression Impa1 0.07 23 0.05 3.8e-05 7.1 1.28e-12 0.66 FALSE
pVTA LOC102553210 gene expression LOC102553210 0.07 2179 0.06 8.5e-06 -6.76 1.41e-11 0.5 FALSE
pVTA LOC108349981 gene expression LOC108349981 0.11 3755 0.07 1.8e-06 6.52 6.81e-11 0.21 FALSE
pVTA LOC120093158 gene expression LOC120093158 0.15 5 0.13 5.5e-11 6.27 3.56e-10 0.49 FALSE
pVTA Mrps28 gene expression Mrps28 0.04 2080 0.03 3.2e-03 6.86 6.98e-12 0.46 FALSE
pVTA Pag1 gene expression Pag1 0.14 1 0.07 2.2e-06 6.52 7.13e-11 0.02 FALSE
pVTA Snx16 isoform ratio NM_022289.3 0.05 4 0.05 3.4e-05 6.93 4.15e-12 0.58 FALSE
pVTA Snx16 isoform ratio XM_006232135.5 0.08 8 0.07 3.0e-06 -7.05 1.73e-12 0.64 FALSE
pVTA Tpd52 isoform ratio XM_063281544.1 0.04 2151 0.03 2.7e-03 6.15 7.92e-10 0.46 FALSE
pVTA Tpd52 isoform ratio XM_063281545.1 0.05 7 0.03 1.1e-03 6.53 6.36e-11 0.52 FALSE
pVTA Pag1 intron excision ratio chr2_93892679_93964594 0.09 41 0.04 4.7e-04 -5.71 1.13e-08 0.2 FALSE
pVTA Snx16 intron excision ratio chr2_93262273_93263955 0.16 8 0.16 5.0e-13 7.22 5.07e-13 0.67 FALSE
pVTA Mrps28 mRNA stability Mrps28 0.05 1 0.04 7.2e-04 -7.06 1.69e-12 0.03 FALSE
pVTA Stmn2 mRNA stability Stmn2 0.07 1 0.05 5.4e-05 -6.96 3.47e-12 0.04 FALSE
pVTA Tpd52 mRNA stability Tpd52 0.12 2151 0.11 8.4e-09 -7.24 4.48e-13 0.61 FALSE
RMTg Fabp12 gene expression Fabp12 0.15 1 0.06 1.1e-02 5.32 1.03e-07 0.05 FALSE
RMTg Tpd52 gene expression Tpd52 0.39 103 0.13 2.1e-04 -6.18 6.50e-10 0.45 FALSE
RMTg Mrps28 mRNA stability Mrps28 0.22 2085 0.09 2.7e-03 7.11 1.16e-12 0.48 FALSE