chr7:26,005,811-30,904,027

Trait: Body weight

Best TWAS P=5.54e-21 · Best GWAS P=5.72e-25 conditioned to 1.00e+00

Associated models

Tissue Gene RNA modality RNA phenotype h2 # weights Model R2 Model R2 P TWAS Z TWAS P Coloc P Joint
Adipose Nr2c1 alternative polyA NM_145780.2 0.04 2761 0.03 3.4e-04 -8.09 5.85e-16 0.05 FALSE
Adipose Nr2c1 alternative polyA XM_039078458.1 0.04 2761 0.03 4.4e-04 8.08 6.56e-16 0.05 FALSE
Adipose Cep83os gene expression Cep83os 0.15 142 0.12 1.2e-13 -6.51 7.41e-11 0.04 FALSE
Adipose Elk3 gene expression Elk3 0.19 2608 0.08 1.3e-09 7.03 2.07e-12 0.08 FALSE
Adipose Fgd6 gene expression Fgd6 0.07 105 0.04 4.3e-05 -5.95 2.68e-09 0.14 FALSE
Adipose LOC102548950 gene expression LOC102548950 0.09 15 0.08 1.5e-09 5.52 3.45e-08 0.02 FALSE
Adipose Ndufa12 gene expression Ndufa12 0.31 161 0.21 1.5e-22 7.31 2.65e-13 0 FALSE
Adipose Socs2 gene expression Socs2 0.04 3496 0.01 4.0e-02 -7.67 1.78e-14 0.34 FALSE
Adipose Tmcc3 gene expression Tmcc3 0.11 2486 0.04 1.3e-05 -5.86 4.61e-09 0.01 FALSE
Adipose Ube2n gene expression Ube2n 0.06 1 0.01 2.9e-02 8.1 5.43e-16 0.03 FALSE
Adipose Vezt gene expression Vezt 0.11 1 0.1 8.4e-11 6.33 2.47e-10 0 FALSE
Adipose Cep83 isoform ratio XM_008765318.3 0.03 1 0.02 1.7e-03 -7.07 1.56e-12 0.03 FALSE
Adipose Nr2c1 isoform ratio NM_145780.2 0.02 2761 0.01 3.2e-02 -8.34 7.34e-17 0.22 FALSE
Adipose Nr2c1 isoform ratio XM_008765216.3 0.02 2761 0.01 2.0e-02 8.92 4.48e-19 0.24 FALSE
Adipose Cep83 intron excision ratio chr7_29322957_29325469 0.03 1 0.02 1.2e-03 6.94 4.05e-12 0.03 FALSE
Adipose Lta4h mRNA stability Lta4h 0.08 2336 0.02 3.4e-03 5.94 2.81e-09 0.21 FALSE
Adipose Vezt mRNA stability Vezt 0.07 2620 0.09 3.0e-10 -7.16 7.98e-13 0.02 FALSE
BLA Nr2c1 alternative polyA NM_145780.2 0.08 2770 0.07 1.1e-04 -7.6 2.89e-14 0.41 FALSE
BLA Nr2c1 alternative polyA XM_039078458.1 0.08 2770 0.07 1.1e-04 7.69 1.51e-14 0.43 FALSE
BLA Socs2 alternative polyA XM_017595137.2 0.1 1 0.06 3.0e-04 -5.64 1.70e-08 0.04 FALSE
BLA Socs2 alternative polyA XM_039079990.1 0.09 3419 0.02 4.0e-02 -6.57 5.09e-11 0.06 FALSE
BLA Ccdc38 gene expression Ccdc38 0.05 2469 0.02 3.8e-02 8.35 7.11e-17 0.29 FALSE
BLA Cdk17 gene expression Cdk17 0.09 2997 0.03 8.8e-03 -5.51 3.51e-08 0.22 FALSE
BLA Fgd6 gene expression Fgd6 0.08 1 0.08 3.4e-05 8.56 1.14e-17 0.23 FALSE
BLA LOC120093559 gene expression LOC120093559 0.07 3160 0.04 2.2e-03 5.72 1.04e-08 0.12 FALSE
BLA Metap2 gene expression Metap2 0.08 44 0.06 2.5e-04 -6.03 1.60e-09 0.5 FALSE
BLA Mir331 gene expression Mir331 0.06 65 0.06 2.8e-04 -8.82 1.12e-18 0.63 FALSE
BLA Ndufa12 gene expression Ndufa12 0.11 2644 0.01 6.0e-02 -7.6 2.97e-14 0.51 TRUE
BLA Ntn4 gene expression Ntn4 0.06 2492 0.04 2.8e-03 7.33 2.25e-13 0.3 FALSE
BLA Vezt gene expression Vezt 0.29 28 0.31 3.5e-17 -8.46 2.77e-17 0.6 FALSE
BLA Nr2c1 isoform ratio NM_145780.2 0.05 1 0.04 2.1e-03 7.55 4.21e-14 0.04 FALSE
BLA Socs2 isoform ratio XM_017595137.2 0.13 1 0.04 3.2e-03 -5.64 1.70e-08 0.04 FALSE
BLA Lta4h intron excision ratio chr7_27997602_27999743 0.06 1 0.03 7.6e-03 6.28 3.34e-10 0.04 FALSE
BLA Vezt intron excision ratio chr7_28557619_28560958 0.12 2627 0.03 6.0e-03 6.37 1.93e-10 0.24 FALSE
BLA Mrpl42 mRNA stability Mrpl42 0.06 3247 0.03 9.8e-03 -6.38 1.80e-10 0.14 FALSE
BLA Plxnc1 mRNA stability Plxnc1 0.09 1 0.08 7.2e-05 -7.85 4.25e-15 0.03 FALSE
BLA Vezt mRNA stability Vezt 0.27 120 0.33 1.5e-18 8.45 3.00e-17 0.78 FALSE
Brain Nr2c1 alternative polyA NM_145780.2 0.05 72 0.06 6.6e-06 7.59 3.14e-14 0.03 FALSE
Brain Nr2c1 alternative polyA XM_039078458.1 0.05 1 0.06 2.8e-06 -7.25 4.22e-13 0.01 FALSE
Brain Fgd6 alternative TSS NM_001137645.1 0.04 1 0.04 3.3e-04 7.98 1.41e-15 0.02 FALSE
Brain Fgd6 alternative TSS XM_039079738.1 0.05 1 0.04 2.0e-04 -7.98 1.41e-15 0.02 FALSE
Brain Ccdc38 gene expression Ccdc38 0.11 2469 0.07 4.3e-07 7.12 1.06e-12 0.39 FALSE
Brain Cdk17 gene expression Cdk17 0.11 117 0.09 1.4e-08 -5.31 1.08e-07 0 FALSE
Brain Fgd6 gene expression Fgd6 0.17 1 0.2 6.5e-18 8.25 1.54e-16 0.12 FALSE
Brain LOC120093556 gene expression LOC120093556 0.05 2435 0.03 1.4e-03 -5.96 2.53e-09 0.17 FALSE
Brain LOC120093563 gene expression LOC120093563 0.05 4 0.03 1.2e-03 9.4 5.54e-21 0.87 TRUE
Brain Lta4h gene expression Lta4h 0.04 1 0.01 2.0e-02 -8.2 2.32e-16 0.03 FALSE
Brain Ndufa12 gene expression Ndufa12 0.42 2644 0.33 3.8e-31 -7.8 6.35e-15 0 FALSE
Brain Plxnc1 gene expression Plxnc1 0.04 3165 0.04 1.2e-04 -6.36 2.04e-10 0.11 FALSE
Brain Vezt gene expression Vezt 0.2 2627 0.22 2.2e-20 -8.22 2.03e-16 0.86 FALSE
Brain Lta4h isoform ratio NM_001030031.2 0.04 2339 0.01 1.4e-02 6.54 6.23e-11 0.66 FALSE
Brain Lta4h isoform ratio XM_006241251.4 0.04 2339 0.01 1.6e-02 -6.43 1.28e-10 0.62 FALSE
Brain Lta4h intron excision ratio chr7_27997602_27999743 0.05 1 0.03 1.3e-03 6.83 8.54e-12 0.03 FALSE
Brain Vezt intron excision ratio chr7_28536176_28538306 0.04 2627 0.03 1.3e-03 8.33 7.96e-17 0.41 FALSE
Brain Lta4h mRNA stability Lta4h 0.09 1 0.07 3.0e-07 -8.33 8.36e-17 0.24 FALSE
Brain Vezt mRNA stability Vezt 0.08 57 0.07 4.3e-07 7.98 1.46e-15 0.82 FALSE
Eye Lta4h gene expression Lta4h 0.37 1 0.19 7.8e-04 -8.27 1.34e-16 0.06 FALSE
Eye Fgd6 isoform ratio NM_001137645.1 0.54 2617 0.13 4.7e-03 -8.08 6.58e-16 0.17 FALSE
IL Tmcc3 gene expression Tmcc3 0.42 1 0.12 7.1e-04 -5.35 8.80e-08 0.05 TRUE
IL Ube2n gene expression Ube2n 0.29 2810 0.09 3.3e-03 6.03 1.61e-09 0.21 FALSE
IL Vezt gene expression Vezt 0.31 2627 0.17 6.6e-05 -7.82 5.27e-15 0.46 FALSE
IL Cep83 isoform ratio NM_001014266.2 0.17 1 0.05 2.9e-02 -6.74 1.57e-11 0.05 FALSE
IL Vezt mRNA stability Vezt 0.26 18 0.08 5.4e-03 -8.12 4.77e-16 0.38 FALSE
LHb LOC120093559 gene expression LOC120093559 0.27 116 0.06 1.6e-02 -6.33 2.48e-10 0.21 FALSE
LHb Plxnc1 gene expression Plxnc1 0.41 3149 0.22 6.1e-06 -5.38 7.29e-08 0.2 FALSE
Liver Nr2c1 alternative polyA NM_145780.2 0.08 29 0.07 1.4e-08 7.27 3.71e-13 0.02 FALSE
Liver Nr2c1 alternative polyA XM_039078458.1 0.08 31 0.08 5.8e-09 -7.17 7.54e-13 0.02 FALSE
Liver Ccdc38 alternative TSS XM_039080092.1 0.02 1 0.02 3.7e-03 6.13 8.90e-10 0.03 FALSE
Liver Amdhd1 gene expression Amdhd1 0.38 267 0.37 1.6e-42 7.16 8.35e-13 0 FALSE
Liver LOC102548950 gene expression LOC102548950 0.13 1 0.11 3.5e-12 -6.18 6.28e-10 0 FALSE
Liver LOC102553539 gene expression LOC102553539 0.14 1 0.11 5.6e-12 8.29 1.17e-16 0.18 FALSE
Liver Ndufa12 gene expression Ndufa12 0.41 2635 0.47 9.6e-58 -7.04 1.90e-12 0 FALSE
Liver Nr2c1 gene expression Nr2c1 0.03 35 0.02 2.5e-03 5.69 1.26e-08 0.11 FALSE
Liver Ntn4 gene expression Ntn4 0.1 2485 0.07 4.5e-08 -9.11 8.06e-20 0.58 FALSE
Liver Nudt4 gene expression Nudt4 0.11 39 0.06 1.4e-07 6.91 4.72e-12 0.01 FALSE
Liver Ccdc38 isoform ratio XM_039080091.1 0.19 182 0.2 2.7e-22 -5.83 5.70e-09 0 FALSE
Liver Ccdc38 isoform ratio XM_039080094.1 0.24 2464 0.27 3.2e-30 -6.71 1.96e-11 0 FALSE
Liver Ccdc38 isoform ratio XM_039080095.1 0.05 2464 0.04 5.0e-05 6.8 1.02e-11 0.19 FALSE
Liver LOC102553539 isoform ratio XR_005486853.1 0.08 2435 0.06 3.4e-07 -5.28 1.31e-07 0 FALSE
Liver LOC102553539 isoform ratio XR_593386.3 0.07 2435 0.05 1.5e-06 5.43 5.62e-08 0.01 FALSE
Liver LOC102554269 isoform ratio XR_005486859.1 0.22 9 0.04 1.7e-05 -5.19 2.10e-07 0 FALSE
Liver Nr2c1 isoform ratio NM_145780.2 0.09 15 0.09 1.0e-09 6.96 3.29e-12 0.03 FALSE
Liver LOC102553539 intron excision ratio chr7_27999133_27999512 0.13 2435 0.1 1.2e-11 8.7 3.35e-18 0.64 FALSE
Liver LOC102553539 intron excision ratio chr7_27999133_27999838 0.17 2435 0.11 3.3e-12 -8.41 4.16e-17 0.69 FALSE
Liver Amdhd1 mRNA stability Amdhd1 0.11 1 0.09 1.2e-10 6.07 1.29e-09 0 FALSE
Liver Ccdc38 mRNA stability Ccdc38 0.33 1 0.34 1.4e-38 -6.07 1.29e-09 0 FALSE
Liver LOC102553539 mRNA stability LOC102553539 0.09 2435 0.06 2.8e-07 -8.41 4.00e-17 0.68 FALSE
Liver Lta4h mRNA stability Lta4h 0.12 2336 0.09 3.1e-10 8.52 1.57e-17 0.62 FALSE
Liver Snrpf mRNA stability Snrpf 0.03 1 0.01 1.1e-02 6.35 2.15e-10 0.03 FALSE
Liver Tmcc3 mRNA stability Tmcc3 0.03 2486 0.02 2.6e-03 -8.92 4.79e-19 0.59 FALSE
NAcc Nr2c1 alternative polyA NM_145780.2 0.05 1 0.04 7.1e-06 7.98 1.41e-15 0.02 FALSE
NAcc Nr2c1 alternative polyA XM_039078458.1 0.05 1 0.05 4.8e-06 -7.98 1.41e-15 0.02 FALSE
NAcc Vezt alternative polyA XM_039078694.1 0.02 1 0.01 2.1e-02 -6.93 4.24e-12 0.03 FALSE
NAcc Vezt alternative polyA XM_039078694.1 0.02 1 0.01 2.7e-02 -6.93 4.24e-12 0.03 FALSE
NAcc Tmcc3 alternative TSS XM_006241261.4 0.03 2428 0.01 3.0e-02 -6.11 9.91e-10 0.19 TRUE
NAcc Ccdc38 gene expression Ccdc38 0.08 2469 0.05 7.5e-07 5.18 2.17e-07 0.03 FALSE
NAcc Elk3 gene expression Elk3 0.06 33 0.06 9.5e-08 5.83 5.63e-09 0.06 FALSE
NAcc Fgd6 gene expression Fgd6 0.04 2617 0.02 8.1e-04 -8.94 3.76e-19 0.61 FALSE
NAcc Lta4h gene expression Lta4h 0.04 2339 0.04 8.3e-06 8.39 4.94e-17 0.36 FALSE
NAcc Mir331 gene expression Mir331 0.03 2 0.02 6.8e-04 8.71 3.17e-18 0.46 FALSE
NAcc Plxnc1 gene expression Plxnc1 0.08 6 0.11 3.1e-12 -6.86 6.70e-12 0 FALSE
NAcc Vezt gene expression Vezt 0.07 2617 0.12 2.9e-14 -8.64 5.48e-18 0.34 FALSE
NAcc Plxnc1 isoform ratio XM_039080099.1 0.02 3009 0.01 2.5e-02 8.11 4.94e-16 0.13 FALSE
NAcc LOC108351432 intron excision ratio chr7_29600910_29601491 0.09 2804 0.02 3.0e-03 -5.21 1.85e-07 0.01 FALSE
NAcc LOC120093559 intron excision ratio chr7_29545175_29548381 0.05 3010 0.04 2.9e-05 -5.82 5.76e-09 0.1 FALSE
NAcc Tmcc3 intron excision ratio chr7_29133627_29159418 0.05 52 0.05 3.3e-06 5.78 7.37e-09 0.06 FALSE
NAcc Vezt intron excision ratio chr7_28538513_28538938 0.05 11 0.03 1.2e-04 -9.03 1.77e-19 0.48 FALSE
NAcc Lta4h mRNA stability Lta4h 0.05 1 0.07 1.5e-08 -8.2 2.32e-16 0.1 FALSE
NAcc Vezt mRNA stability Vezt 0.12 16 0.2 3.0e-23 -9.05 1.37e-19 0.86 FALSE
OFC Ndufa12 gene expression Ndufa12 0.22 1 0.13 4.7e-04 6.76 1.34e-11 0.05 TRUE
OFC Vezt gene expression Vezt 0.26 1 0.18 4.2e-05 8.33 8.36e-17 0.06 FALSE
OFC Vezt mRNA stability Vezt 0.37 1 0.23 4.6e-06 7.73 1.11e-14 0.05 FALSE
PL LOC102548848 alternative polyA XR_005486848.1 0.16 3004 0.1 8.6e-11 5.53 3.20e-08 0 TRUE
PL LOC102548848 alternative polyA XR_355387.4 0.12 3004 0.07 3.7e-08 -5.98 2.26e-09 0 FALSE
PL LOC102548848 alternative polyA XR_005486848.1 0.18 3004 0.09 1.9e-10 5.79 7.23e-09 0 FALSE
PL Nr2c1 alternative polyA NM_145780.2 0.04 1 0.06 3.1e-07 7.33 2.23e-13 0 FALSE
PL Nr2c1 alternative polyA XM_039078458.1 0.05 1 0.06 2.8e-07 -7.33 2.23e-13 0 FALSE
PL Socs2 alternative polyA XM_039079993.1 0.06 17 0.04 1.1e-05 -6.61 3.97e-11 0.01 FALSE
PL Ccdc38 gene expression Ccdc38 0.07 25 0.04 4.4e-05 -5.77 7.98e-09 0.22 FALSE
PL Fgd6 gene expression Fgd6 0.06 1 0.08 3.0e-09 7.49 7.04e-14 0 FALSE
PL LOC120093558 gene expression LOC120093558 0.55 1 0.29 2.0e-32 -5.41 6.15e-08 0 FALSE
PL LOC120093559 gene expression LOC120093559 0.08 29 0.09 9.4e-10 -5.4 6.70e-08 0.06 FALSE
PL Lta4h gene expression Lta4h 0.03 2339 0.01 3.5e-02 7.8 6.02e-15 0.4 FALSE
PL Mir331 gene expression Mir331 0.02 2415 0.03 6.2e-04 8.46 2.69e-17 0.47 FALSE
PL Ndufa12 gene expression Ndufa12 0.07 1 0.13 1.5e-14 7.98 1.41e-15 0.02 FALSE
PL Tmcc3 gene expression Tmcc3 0.38 12 0.24 1.1e-25 5.34 9.38e-08 0 FALSE
PL Vezt gene expression Vezt 0.26 22 0.36 2.7e-41 -8.07 7.18e-16 0.54 FALSE
PL LOC102548260 intron excision ratio chr7_26674153_26674654 0.05 1998 0.01 7.2e-02 5.43 5.50e-08 0.67 FALSE
PL Lta4h mRNA stability Lta4h 0.05 1 0.07 5.9e-08 -8.38 5.47e-17 0.32 FALSE
PL Plxnc1 mRNA stability Plxnc1 0.04 1 0.03 4.5e-04 -8.07 7.32e-16 0.03 FALSE
PL Vezt mRNA stability Vezt 0.16 21 0.22 2.5e-23 -8.55 1.28e-17 0.8 FALSE
pVTA Fgd6 gene expression Fgd6 0.05 1 0.03 2.7e-02 6.21 5.35e-10 0.04 FALSE
pVTA Plxnc1 gene expression Plxnc1 0.1 71 0.06 1.3e-03 5.86 4.62e-09 0.04 FALSE
pVTA Vezt gene expression Vezt 0.1 1 0.04 4.9e-03 8.94 3.84e-19 0.63 FALSE
pVTA Lta4h intron excision ratio chr7_27997602_27999743 0.06 2339 0.05 4.7e-03 -5.51 3.53e-08 0.09 FALSE
pVTA Lta4h mRNA stability Lta4h 0.18 2339 0.12 4.8e-06 8.01 1.17e-15 0.47 FALSE