Best TWAS P=1.48e-08 · Best GWAS P=2.33e-08 conditioned to 2.04e-01
Tissue | Gene | RNA modality | RNA phenotype | h2 | # weights | Model R2 | Model R2 P | TWAS Z | TWAS P | Coloc P | Joint |
---|---|---|---|---|---|---|---|---|---|---|---|
Adipose | Pigh | gene expression | ENSRNOG00000010914 | 0.11 | 17 | 0.07 | 3.4e-08 | 5.58 | 2.37e-08 | 0.51 | FALSE |
BLA | Pigh | alternative polyA | ENSRNOT00000014775 | 0.12 | 30 | 0.06 | 5.1e-04 | -5.45 | 4.99e-08 | 0.62 | FALSE |
BLA | Pigh | alternative polyA | ENSRNOT00000101349 | 0.16 | 2175 | 0.07 | 8.8e-05 | 5.26 | 1.47e-07 | 0.69 | FALSE |
BLA | Pigh | gene expression | ENSRNOG00000010914 | 0.25 | 114 | 0.2 | 5.3e-11 | 5.53 | 3.20e-08 | 0.91 | FALSE |
BLA | Arg2 | gene expression | ENSRNOG00000053811 | 0.2 | 1 | 0.17 | 2.4e-09 | 5.26 | 1.46e-07 | 0.88 | FALSE |
BLA | Pigh | isoform ratio | ENSRNOT00000014775 | 0.19 | 119 | 0.13 | 2.8e-07 | -5.38 | 7.49e-08 | 0.75 | FALSE |
BLA | Pigh | isoform ratio | ENSRNOT00000101349 | 0.18 | 156 | 0.11 | 1.0e-06 | 5.63 | 1.84e-08 | 0.86 | FALSE |
BLA | Arg2 | mRNA stability | ENSRNOG00000053811 | 0.15 | 1 | 0.12 | 5.8e-07 | 5.32 | 1.02e-07 | 0.86 | FALSE |
Brain | Atp6v1d | mRNA stability | ENSRNOG00000009080 | 0.09 | 1744 | 0.04 | 3.0e-04 | -5.47 | 4.56e-08 | 0.94 | FALSE |
IL | Mpp5 | mRNA stability | ENSRNOG00000008788 | 0.65 | 1508 | 0.29 | 1.2e-07 | 5.2 | 1.97e-07 | 0.96 | FALSE |
Liver | Pigh | isoform ratio | ENSRNOT00000101349 | 0.03 | 2174 | 0 | 9.9e-02 | 5.66 | 1.48e-08 | 0.57 | TRUE |
NAcc | Zfyve26 | intron excision ratio | chr6:98082700:98083733 | 0.33 | 95 | 0.23 | 3.9e-17 | 5.25 | 1.54e-07 | 0 | FALSE |
NAcc | Zfyve26 | intron excision ratio | chr6:98082703:98083733 | 0.34 | 96 | 0.23 | 2.0e-17 | -5.38 | 7.50e-08 | 0 | FALSE |
OFC | Pigh | gene expression | ENSRNOG00000010914 | 0.28 | 15 | 0.11 | 1.3e-03 | 5.15 | 2.66e-07 | 0.71 | FALSE |
PL | Pigh | isoform ratio | ENSRNOT00000014775 | 0.1 | 1 | 0.07 | 2.9e-06 | -5.34 | 9.47e-08 | 0.9 | FALSE |
PL | Pigh | isoform ratio | ENSRNOT00000101349 | 0.13 | 2174 | 0.09 | 3.6e-07 | 5.59 | 2.33e-08 | 0.95 | FALSE |
PL | Mpp5 | mRNA stability | ENSRNOG00000008788 | 0.67 | 1512 | 0.45 | 6.3e-38 | 5.1 | 3.38e-07 | 0.71 | FALSE |