Best TWAS P=1.965534e-09 · Best GWAS P=1.441641e-09 conditioned to 1
# | Tissue | Gene | Modality | RNA phenotype | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | Adipose | Ubr2 | alternative polyA | ENSRNOT00000100833 | 0.02 | 0.00 | blup | 1694 | 0.01 | 4.7e-02 | -4.9 | -5.4 | 6.6e-08 | 0.50 | 0.36 | 0.30 | TRUE |
2 | Adipose | Ppp2r5d | alternative TSS | ENSRNOT00000108773 | 0.09 | 0.09 | lasso | 18 | 0.09 | 8.0e-10 | -5.0 | -5.3 | 1.3e-07 | 0.55 | 0.42 | 0.58 | FALSE |
3 | Adipose | Ppp2r5d | gene expression | ENSRNOG00000016849 | 0.04 | 0.02 | top1 | 1 | 0.02 | 1.6e-03 | -5.1 | -5.1 | 2.6e-07 | 0.59 | 0.05 | 0.04 | FALSE |
4 | Adipose | Rrp36 | gene expression | ENSRNOG00000017836 | 0.40 | 0.44 | blup | 1253 | 0.44 | 2.1e-53 | -5.1 | 5.2 | 1.5e-07 | -0.59 | 0.36 | 0.64 | FALSE |
5 | Adipose | Mrpl2 | gene expression | ENSRNOG00000018057 | 0.05 | 0.01 | enet | 81 | 0.03 | 4.3e-04 | -4.6 | -5.1 | 3.4e-07 | 0.57 | 0.36 | 0.35 | TRUE |
6 | Adipose | Klc4 | gene expression | ENSRNOG00000018168 | 0.05 | 0.03 | blup | 1222 | 0.04 | 6.0e-05 | -5.1 | 5.4 | 7.8e-08 | -0.49 | 0.41 | 0.58 | FALSE |
7 | Adipose | Slc29a1 | gene expression | ENSRNOG00000019752 | 0.14 | 0.11 | top1 | 1 | 0.11 | 2.6e-12 | -5.8 | -5.8 | 7.0e-09 | 0.98 | 0.36 | 0.64 | FALSE |
8 | Adipose | Cdc5l | gene expression | ENSRNOG00000019975 | 0.07 | 0.08 | top1 | 1 | 0.08 | 3.0e-09 | -6.0 | -6.0 | 2.2e-09 | 0.96 | 0.16 | 0.84 | TRUE |
9 | Adipose | Aars2 | gene expression | ENSRNOG00000025808 | 0.24 | 0.18 | top1 | 1 | 0.18 | 3.2e-19 | -5.8 | -5.8 | 7.0e-09 | 0.98 | 0.36 | 0.64 | FALSE |
10 | Adipose | Ptk7 | gene expression | ENSRNOG00000039976 | 0.20 | 0.18 | enet | 181 | 0.18 | 2.2e-19 | -5.1 | 5.2 | 1.7e-07 | -0.57 | 0.37 | 0.63 | FALSE |
11 | Adipose | Klhdc3 | isoform ratio | ENSRNOT00000023979 | 0.03 | 0.03 | top1 | 1 | 0.03 | 2.8e-04 | -5.1 | 5.1 | 2.7e-07 | -0.60 | 0.07 | 0.07 | FALSE |
12 | Adipose | Klhdc3 | isoform ratio | ENSRNOT00000102730 | 0.04 | 0.03 | top1 | 1 | 0.03 | 2.1e-04 | -5.1 | -5.1 | 2.7e-07 | 0.59 | 0.07 | 0.08 | FALSE |
13 | Adipose | Klhdc3 | intron excision ratio | chr9:14302484:14304654 | 0.09 | 0.10 | top1 | 1 | 0.10 | 3.3e-11 | -5.1 | 5.1 | 2.6e-07 | -0.60 | 0.43 | 0.57 | FALSE |
14 | Adipose | Trerf1 | intron excision ratio | chr9:13668682:13673744 | 0.04 | 0.03 | top1 | 1 | 0.03 | 7.5e-04 | -5.2 | 5.2 | 2.4e-07 | -0.58 | 0.06 | 0.04 | FALSE |
15 | Adipose | Pex6 | mRNA stability | ENSRNOG00000016655 | 0.07 | 0.06 | blup | 1332 | 0.06 | 1.1e-07 | -5.1 | -5.3 | 1.1e-07 | 0.57 | 0.40 | 0.60 | FALSE |
16 | Adipose | Ppp2r5d | mRNA stability | ENSRNOG00000016849 | 0.03 | 0.02 | top1 | 1 | 0.02 | 3.2e-03 | -5.1 | 5.1 | 2.8e-07 | -0.60 | 0.05 | 0.04 | FALSE |
17 | Adipose | Rrp36 | mRNA stability | ENSRNOG00000017836 | 0.03 | 0.02 | top1 | 1 | 0.03 | 7.7e-04 | -5.2 | 5.2 | 2.4e-07 | -0.61 | 0.07 | 0.08 | FALSE |
18 | Adipose | Aars2 | mRNA stability | ENSRNOG00000025808 | 0.14 | 0.13 | top1 | 1 | 0.13 | 2.2e-14 | -5.8 | -5.8 | 7.0e-09 | 0.97 | 0.36 | 0.64 | FALSE |
19 | BLA | Ppp2r5d | alternative TSS | ENSRNOT00000022862 | 0.22 | 0.21 | blup | 1338 | 0.22 | 7.7e-12 | -5.1 | 5.4 | 6.6e-08 | -0.55 | 0.39 | 0.61 | FALSE |
20 | BLA | Ppp2r5d | alternative TSS | ENSRNOT00000108773 | 0.23 | 0.22 | blup | 1338 | 0.23 | 8.3e-13 | -5.1 | -5.4 | 6.6e-08 | 0.55 | 0.39 | 0.61 | FALSE |
21 | BLA | Rrp36 | gene expression | ENSRNOG00000017836 | 0.46 | 0.50 | blup | 1256 | 0.52 | 6.7e-32 | -5.2 | 5.1 | 2.7e-07 | -0.58 | 0.38 | 0.62 | FALSE |
22 | BLA | Klc4 | gene expression | ENSRNOG00000018168 | 0.10 | 0.12 | top1 | 1 | 0.12 | 4.4e-07 | -5.3 | 5.3 | 1.0e-07 | -0.61 | 0.21 | 0.69 | FALSE |
23 | BLA | Nfkbie | gene expression | ENSRNOG00000019907 | 0.12 | 0.06 | enet | 46 | 0.07 | 1.8e-04 | 4.4 | -5.2 | 1.7e-07 | 0.76 | 0.56 | 0.35 | TRUE |
24 | BLA | Mrps10 | gene expression | ENSRNOG00000022609 | 0.51 | 0.40 | blup | 1740 | 0.41 | 1.3e-23 | -4.9 | 5.5 | 4.0e-08 | -0.55 | 0.34 | 0.66 | FALSE |
25 | BLA | Klhdc3 | intron excision ratio | chr9:14304118:14304654 | 0.15 | 0.14 | top1 | 1 | 0.14 | 1.1e-07 | -5.1 | -5.1 | 2.7e-07 | 0.60 | 0.43 | 0.55 | FALSE |
26 | BLA | Trerf1 | intron excision ratio | chr9:13710850:13768409 | 0.11 | 0.08 | top1 | 1 | 0.08 | 5.4e-05 | -5.3 | 5.3 | 9.3e-08 | -0.59 | 0.15 | 0.36 | FALSE |
27 | BLA | Trerf1 | intron excision ratio | chr9:13760250:13761689 | 0.05 | 0.05 | top1 | 1 | 0.05 | 1.2e-03 | -5.3 | -5.3 | 9.5e-08 | 0.55 | 0.08 | 0.06 | FALSE |
28 | Brain | Bicral | gene expression | ENSRNOG00000016229 | 0.44 | 0.35 | enet | 135 | 0.38 | 3.1e-37 | -4.8 | 5.1 | 3.5e-07 | -0.40 | 0.91 | 0.09 | FALSE |
29 | Brain | Pex6 | gene expression | ENSRNOG00000016655 | 0.36 | 0.44 | top1 | 1 | 0.44 | 3.2e-44 | -5.3 | -5.3 | 1.1e-07 | 0.60 | 0.25 | 0.75 | FALSE |
30 | Brain | Klhdc3 | gene expression | ENSRNOG00000017495 | 0.09 | 0.08 | top1 | 1 | 0.08 | 1.6e-07 | -5.1 | 5.1 | 2.6e-07 | -0.61 | 0.43 | 0.57 | FALSE |
31 | Brain | Mrpl2 | gene expression | ENSRNOG00000018057 | 0.04 | 0.03 | blup | 1225 | 0.03 | 6.5e-04 | -5.3 | -5.3 | 1.1e-07 | 0.55 | 0.36 | 0.58 | FALSE |
32 | Brain | Klc4 | gene expression | ENSRNOG00000018168 | 0.73 | 0.67 | lasso | 52 | 0.67 | 2.5e-84 | -5.2 | 5.2 | 2.5e-07 | -0.60 | 0.39 | 0.61 | FALSE |
33 | Brain | Srf | gene expression | ENSRNOG00000018232 | 0.04 | 0.01 | blup | 1046 | 0.02 | 4.5e-03 | -5.3 | 5.3 | 1.1e-07 | -0.51 | 0.34 | 0.60 | FALSE |
34 | Brain | Hsp90ab1 | gene expression | ENSRNOG00000019834 | 0.10 | 0.03 | blup | 2011 | 0.06 | 2.4e-06 | -5.7 | -5.3 | 1.3e-07 | 0.86 | 0.26 | 0.74 | TRUE |
35 | Brain | Bysl | gene expression | ENSRNOG00000049121 | 0.05 | 0.05 | top1 | 1 | 0.05 | 3.0e-05 | -5.3 | 5.3 | 1.2e-07 | -0.57 | 0.09 | 0.76 | FALSE |
36 | Brain | Ubr2 | isoform ratio | ENSRNOT00000094973 | 0.07 | 0.05 | top1 | 1 | 0.05 | 2.0e-05 | -5.3 | -5.3 | 1.1e-07 | 0.59 | 0.28 | 0.68 | FALSE |
37 | Brain | Ubr2 | isoform ratio | ENSRNOT00000111742 | 0.10 | 0.10 | top1 | 1 | 0.10 | 3.0e-09 | -5.3 | 5.3 | 9.5e-08 | -0.59 | 0.26 | 0.74 | FALSE |
38 | Brain | Cnpy3 | intron excision ratio | chr9:14237487:14242286 | 0.02 | 0.02 | top1 | 1 | 0.02 | 3.8e-03 | -5.2 | 5.2 | 2.2e-07 | -0.60 | 0.06 | 0.05 | FALSE |
39 | Brain | Klhdc3 | intron excision ratio | chr9:14302484:14303967 | 0.14 | 0.15 | top1 | 1 | 0.15 | 3.1e-14 | -5.3 | -5.3 | 1.1e-07 | 0.60 | 0.24 | 0.76 | FALSE |
40 | Brain | Klhdc3 | intron excision ratio | chr9:14302484:14304654 | 0.38 | 0.41 | lasso | 56 | 0.42 | 1.2e-41 | -5.2 | 5.3 | 1.2e-07 | -0.57 | 0.36 | 0.64 | FALSE |
41 | Brain | Klhdc3 | intron excision ratio | chr9:14304118:14304654 | 0.11 | 0.11 | blup | 1283 | 0.13 | 9.9e-12 | -5.2 | -5.4 | 6.5e-08 | 0.55 | 0.40 | 0.60 | FALSE |
42 | Brain | Trerf1 | intron excision ratio | chr9:13760250:13761689 | 0.11 | 0.11 | top1 | 1 | 0.11 | 3.6e-10 | -5.2 | -5.2 | 2.5e-07 | 0.59 | 0.46 | 0.54 | FALSE |
43 | Brain | Trerf1 | intron excision ratio | chr9:13768495:13856943 | 0.06 | 0.07 | top1 | 1 | 0.07 | 3.6e-07 | -5.2 | 5.2 | 1.7e-07 | -0.58 | 0.35 | 0.59 | FALSE |
44 | Brain | Rrp36 | mRNA stability | ENSRNOG00000017836 | 0.10 | 0.12 | top1 | 1 | 0.12 | 7.3e-11 | -5.2 | 5.2 | 2.5e-07 | -0.60 | 0.42 | 0.58 | FALSE |
45 | Brain | Cul7 | mRNA stability | ENSRNOG00000017857 | 0.15 | 0.18 | blup | 1232 | 0.18 | 1.2e-16 | -5.2 | -5.3 | 1.2e-07 | 0.59 | 0.40 | 0.60 | FALSE |
46 | Brain | Cdc5l | mRNA stability | ENSRNOG00000019975 | 0.05 | 0.03 | blup | 1996 | 0.03 | 4.9e-04 | -4.2 | -5.3 | 8.9e-08 | 0.74 | 0.73 | 0.19 | TRUE |
47 | Eye | Guca1b | gene expression | ENSRNOG00000015623 | 0.87 | 0.24 | blup | 1723 | 0.38 | 7.6e-07 | -4.8 | -5.5 | 3.8e-08 | 0.54 | 0.38 | 0.59 | FALSE |
48 | IL | Rrp36 | gene expression | ENSRNOG00000017836 | 0.49 | 0.36 | top1 | 1 | 0.36 | 1.2e-09 | -5.2 | 5.2 | 2.3e-07 | -0.59 | 0.32 | 0.49 | FALSE |
49 | IL | Cul7 | gene expression | ENSRNOG00000017857 | 0.28 | 0.24 | top1 | 1 | 0.24 | 1.7e-06 | -5.3 | 5.3 | 9.6e-08 | -0.60 | 0.11 | 0.27 | FALSE |
50 | IL | Nfkbie | gene expression | ENSRNOG00000019907 | 0.26 | 0.08 | blup | 2019 | 0.11 | 1.5e-03 | -5.7 | -5.8 | 7.5e-09 | 0.87 | 0.33 | 0.60 | FALSE |
51 | IL | Cdc5l | gene expression | ENSRNOG00000019975 | 0.38 | 0.23 | enet | 21 | 0.24 | 1.6e-06 | 3.3 | -5.2 | 2.2e-07 | 0.51 | 0.81 | 0.16 | TRUE |
52 | IL | Mrps10 | gene expression | ENSRNOG00000022609 | 0.39 | 0.31 | lasso | 5 | 0.34 | 6.8e-09 | -5.3 | 5.2 | 2.3e-07 | -0.59 | 0.34 | 0.66 | FALSE |
53 | IL | Klhdc3 | intron excision ratio | chr9:14302484:14304654 | 0.32 | 0.17 | blup | 1277 | 0.24 | 2.0e-06 | -5.3 | 5.4 | 6.2e-08 | -0.54 | 0.41 | 0.59 | FALSE |
54 | LHb | Ppp2r5d | alternative TSS | ENSRNOT00000022862 | 0.22 | 0.15 | blup | 1331 | 0.15 | 2.2e-04 | -5.1 | 5.4 | 6.3e-08 | -0.54 | 0.40 | 0.55 | FALSE |
55 | LHb | Ppp2r5d | alternative TSS | ENSRNOT00000108773 | 0.23 | 0.16 | blup | 1331 | 0.17 | 9.6e-05 | -5.1 | -5.4 | 7.2e-08 | 0.55 | 0.40 | 0.56 | FALSE |
56 | LHb | Cnpy3 | gene expression | ENSRNOG00000016315 | 0.14 | 0.15 | top1 | 1 | 0.15 | 2.0e-04 | -5.3 | -5.3 | 1.5e-07 | 0.60 | 0.08 | 0.06 | FALSE |
57 | LHb | Pex6 | gene expression | ENSRNOG00000016655 | 0.26 | 0.21 | top1 | 1 | 0.21 | 1.0e-05 | -5.3 | -5.3 | 1.3e-07 | 0.59 | 0.11 | 0.19 | FALSE |
58 | LHb | Rrp36 | gene expression | ENSRNOG00000017836 | 0.40 | 0.39 | top1 | 1 | 0.39 | 3.2e-10 | -5.1 | 5.1 | 2.9e-07 | -0.59 | 0.42 | 0.52 | FALSE |
59 | LHb | Cul7 | gene expression | ENSRNOG00000017857 | 0.35 | 0.25 | lasso | 3 | 0.31 | 5.4e-08 | -5.3 | 5.5 | 3.2e-08 | -0.65 | 0.38 | 0.61 | FALSE |
60 | LHb | Klc4 | gene expression | ENSRNOG00000018168 | 0.18 | 0.03 | blup | 1220 | 0.12 | 9.6e-04 | -5.2 | 5.4 | 7.5e-08 | -0.53 | 0.36 | 0.52 | FALSE |
61 | LHb | NA | gene expression | ENSRNOG00000064080 | 0.92 | 0.42 | enet | 26 | 0.45 | 6.1e-12 | 3.5 | 5.2 | 2.4e-07 | -0.81 | 0.94 | 0.06 | FALSE |
62 | LHb | Tcte1 | gene expression | ENSRNOG00000065569 | 0.25 | 0.06 | blup | 1995 | 0.08 | 7.2e-03 | 4.3 | 5.2 | 1.9e-07 | -0.76 | 0.39 | 0.36 | FALSE |
63 | LHb | Klhdc3 | intron excision ratio | chr9:14304118:14304654 | 0.29 | 0.09 | top1 | 1 | 0.09 | 4.3e-03 | -5.1 | -5.1 | 2.6e-07 | 0.58 | 0.07 | 0.05 | FALSE |
64 | Liver | Gnmt | alternative polyA | ENSRNOT00000072812 | 0.17 | 0.21 | lasso | 39 | 0.21 | 3.0e-23 | -5.1 | -5.1 | 3.6e-07 | 0.58 | 0.39 | 0.61 | FALSE |
65 | Liver | Gnmt | gene expression | ENSRNOG00000016349 | 0.35 | 0.32 | blup | 1350 | 0.33 | 3.2e-37 | -5.1 | 5.3 | 9.5e-08 | -0.57 | 0.38 | 0.62 | FALSE |
66 | Liver | Pex6 | gene expression | ENSRNOG00000016655 | 0.47 | 0.44 | enet | 339 | 0.45 | 1.0e-54 | -5.1 | -5.1 | 3.0e-07 | 0.60 | 0.38 | 0.62 | FALSE |
67 | Liver | Rrp36 | gene expression | ENSRNOG00000017836 | 0.37 | 0.41 | blup | 1253 | 0.42 | 7.4e-50 | -5.1 | 5.1 | 2.8e-07 | -0.60 | 0.37 | 0.63 | FALSE |
68 | Liver | Hsp90ab1 | gene expression | ENSRNOG00000019834 | 0.05 | 0.04 | top1 | 1 | 0.04 | 4.4e-05 | -5.5 | -5.5 | 3.9e-08 | 0.98 | 0.37 | 0.13 | FALSE |
69 | Liver | Nfkbie | gene expression | ENSRNOG00000019907 | 0.04 | 0.01 | top1 | 1 | 0.01 | 7.9e-03 | -5.5 | -5.5 | 3.9e-08 | 0.98 | 0.06 | 0.03 | FALSE |
70 | Liver | Mrps10 | gene expression | ENSRNOG00000022609 | 0.76 | 0.52 | top1 | 1 | 0.52 | 1.3e-67 | -5.3 | 5.3 | 1.0e-07 | -0.56 | 0.16 | 0.84 | FALSE |
71 | Liver | Aars2 | gene expression | ENSRNOG00000025808 | 0.26 | 0.22 | lasso | 26 | 0.25 | 2.2e-27 | -5.8 | -5.9 | 4.3e-09 | 0.93 | 0.25 | 0.75 | FALSE |
72 | Liver | Capn11 | gene expression | ENSRNOG00000026025 | 0.26 | 0.26 | top1 | 1 | 0.26 | 1.0e-28 | -5.8 | -5.8 | 7.0e-09 | 0.95 | 0.36 | 0.64 | FALSE |
73 | Liver | NA | gene expression | ENSRNOG00000064080 | 0.22 | 0.20 | enet | 23 | 0.21 | 2.3e-23 | -5.5 | 5.8 | 5.9e-09 | -0.91 | 0.26 | 0.74 | FALSE |
74 | Liver | Ubr2 | isoform ratio | ENSRNOT00000094973 | 0.02 | 0.00 | top1 | 1 | 0.00 | 9.6e-02 | -5.1 | -5.1 | 2.6e-07 | 0.60 | 0.05 | 0.03 | FALSE |
75 | Liver | Ubr2 | isoform ratio | ENSRNOT00000111742 | 0.05 | 0.02 | enet | 16 | 0.03 | 2.7e-04 | -5.1 | 5.1 | 2.7e-07 | -0.59 | 0.47 | 0.52 | FALSE |
76 | Liver | Slc29a1 | isoform ratio | ENSRNOT00000111451 | 0.06 | 0.06 | top1 | 1 | 0.06 | 1.7e-07 | -5.5 | -5.5 | 3.9e-08 | 0.98 | 0.72 | 0.24 | FALSE |
77 | Liver | Klc4 | intron excision ratio | chr9:14342948:14343345 | 0.02 | 0.02 | top1 | 1 | 0.02 | 2.2e-03 | -5.1 | -5.1 | 2.6e-07 | 0.61 | 0.04 | 0.03 | FALSE |
78 | Liver | Slc29a1 | intron excision ratio | chr9:15399733:15405034 | 0.19 | 0.20 | top1 | 1 | 0.20 | 2.2e-21 | -5.5 | -5.5 | 3.9e-08 | 0.97 | 0.75 | 0.25 | FALSE |
79 | Liver | Slc29a1 | intron excision ratio | chr9:15403262:15405034 | 0.12 | 0.15 | top1 | 1 | 0.15 | 8.0e-16 | -5.5 | 5.5 | 3.9e-08 | -0.94 | 0.75 | 0.25 | FALSE |
80 | Liver | Cnpy3 | mRNA stability | ENSRNOG00000016315 | 0.04 | 0.04 | top1 | 1 | 0.04 | 4.6e-05 | -5.1 | -5.1 | 2.8e-07 | 0.60 | 0.16 | 0.17 | FALSE |
81 | Liver | Mea1 | mRNA stability | ENSRNOG00000017144 | 0.06 | 0.07 | top1 | 1 | 0.07 | 6.4e-08 | -5.1 | -5.1 | 2.6e-07 | 0.61 | 0.43 | 0.56 | FALSE |
82 | Liver | Aars2 | mRNA stability | ENSRNOG00000025808 | 0.13 | 0.11 | enet | 112 | 0.13 | 2.8e-14 | -5.3 | -5.6 | 1.8e-08 | 0.92 | 0.32 | 0.69 | FALSE |
83 | NAcc | Ppp2r5d | alternative TSS | ENSRNOT00000022862 | 0.09 | 0.11 | top1 | 1 | 0.11 | 1.8e-08 | -5.3 | 5.3 | 1.5e-07 | -0.60 | 0.31 | 0.68 | FALSE |
84 | NAcc | Ppp2r5d | alternative TSS | ENSRNOT00000108773 | 0.10 | 0.13 | top1 | 1 | 0.13 | 9.0e-10 | -5.3 | -5.3 | 1.5e-07 | 0.60 | 0.32 | 0.68 | FALSE |
85 | NAcc | Rrp36 | gene expression | ENSRNOG00000017836 | 0.35 | 0.39 | lasso | 34 | 0.42 | 4.1e-34 | -5.1 | 5.2 | 2.5e-07 | -0.58 | 0.36 | 0.64 | FALSE |
86 | NAcc | Cul7 | gene expression | ENSRNOG00000017857 | 0.17 | 0.17 | top1 | 1 | 0.17 | 2.4e-12 | -5.1 | 5.1 | 2.9e-07 | -0.60 | 0.44 | 0.56 | FALSE |
87 | NAcc | Hsp90ab1 | gene expression | ENSRNOG00000019834 | 0.05 | 0.04 | top1 | 1 | 0.04 | 3.1e-04 | -5.8 | -5.8 | 5.1e-09 | 0.96 | 0.10 | 0.14 | FALSE |
88 | NAcc | NA | gene expression | ENSRNOG00000064080 | 0.76 | 0.59 | enet | 82 | 0.63 | 1.0e-59 | 4.4 | 5.1 | 2.8e-07 | -0.79 | 1.00 | 0.00 | FALSE |
89 | NAcc | Ubr2 | isoform ratio | ENSRNOT00000111742 | 0.03 | 0.03 | top1 | 1 | 0.03 | 1.8e-03 | -5.2 | 5.2 | 2.0e-07 | -0.59 | 0.06 | 0.04 | FALSE |
90 | NAcc | Trerf1 | intron excision ratio | chr9:13710850:13768409 | 0.11 | 0.06 | blup | 1881 | 0.09 | 4.1e-07 | -5.1 | 5.4 | 8.2e-08 | -0.51 | 0.47 | 0.53 | FALSE |
91 | NAcc | Trerf1 | intron excision ratio | chr9:13760250:13761689 | 0.10 | 0.11 | top1 | 1 | 0.11 | 1.7e-08 | -5.3 | -5.3 | 1.5e-07 | 0.57 | 0.34 | 0.65 | FALSE |
92 | NAcc | Trerf1 | intron excision ratio | chr9:13768495:13856943 | 0.07 | 0.08 | top1 | 1 | 0.08 | 1.9e-06 | -5.3 | 5.3 | 9.3e-08 | -0.57 | 0.22 | 0.63 | FALSE |
93 | NAcc | Rrp36 | mRNA stability | ENSRNOG00000017836 | 0.05 | 0.04 | lasso | 79 | 0.04 | 3.4e-04 | -5.2 | 5.1 | 3.0e-07 | -0.59 | 0.36 | 0.59 | FALSE |
94 | NAcc | Cul7 | mRNA stability | ENSRNOG00000017857 | 0.08 | 0.03 | top1 | 1 | 0.03 | 1.3e-03 | -5.2 | -5.2 | 2.4e-07 | 0.59 | 0.05 | 0.05 | FALSE |
95 | OFC | Vegfa | alternative TSS | ENSRNOT00000026637 | 0.26 | 0.12 | top1 | 1 | 0.12 | 7.1e-04 | -5.9 | -5.9 | 3.8e-09 | 0.97 | 0.06 | 0.10 | FALSE |
96 | OFC | Vegfa | alternative TSS | ENSRNOT00000083811 | 0.28 | 0.14 | top1 | 1 | 0.14 | 4.1e-04 | -5.9 | 5.9 | 3.8e-09 | -0.96 | 0.07 | 0.12 | FALSE |
97 | OFC | Mrps10 | alternative TSS | ENSRNOT00000087971 | 0.22 | 0.16 | top1 | 1 | 0.16 | 1.3e-04 | -5.3 | -5.3 | 9.6e-08 | 0.57 | 0.10 | 0.20 | FALSE |
98 | OFC | Mrps10 | alternative TSS | ENSRNOT00000116536 | 0.22 | 0.17 | top1 | 1 | 0.17 | 8.1e-05 | -5.3 | 5.3 | 9.6e-08 | -0.56 | 0.10 | 0.22 | FALSE |
99 | OFC | Bicral | gene expression | ENSRNOG00000016229 | 0.23 | 0.08 | blup | 1674 | 0.09 | 3.1e-03 | -4.6 | 5.4 | 6.6e-08 | -0.48 | 0.40 | 0.34 | FALSE |
100 | OFC | Pex6 | gene expression | ENSRNOG00000016655 | 0.57 | 0.35 | lasso | 3 | 0.35 | 3.9e-09 | -5.1 | -5.2 | 2.0e-07 | -0.57 | 0.40 | 0.60 | TRUE |
101 | OFC | Rrp36 | gene expression | ENSRNOG00000017836 | 0.57 | 0.26 | enet | 11 | 0.35 | 4.2e-09 | -5.1 | 5.3 | 1.1e-07 | -0.45 | 0.40 | 0.60 | FALSE |
102 | OFC | Cul7 | gene expression | ENSRNOG00000017857 | 0.18 | 0.05 | enet | 11 | 0.12 | 9.5e-04 | -4.7 | 5.4 | 5.4e-08 | -0.58 | 0.29 | 0.40 | TRUE |
103 | OFC | Slc29a1 | gene expression | ENSRNOG00000019752 | 0.16 | 0.03 | top1 | 1 | 0.03 | 8.3e-02 | -5.8 | 5.8 | 5.0e-09 | -0.91 | 0.10 | 0.05 | FALSE |
104 | OFC | Mrps10 | isoform ratio | ENSRNOT00000087971 | 0.19 | 0.08 | top1 | 1 | 0.08 | 5.6e-03 | -5.3 | -5.3 | 9.6e-08 | 0.57 | 0.09 | 0.08 | FALSE |
105 | OFC | Mrps10 | isoform ratio | ENSRNOT00000116536 | 0.27 | 0.12 | top1 | 1 | 0.12 | 7.1e-04 | -5.3 | 5.3 | 9.6e-08 | -0.57 | 0.09 | 0.12 | FALSE |
106 | OFC | Klhdc3 | intron excision ratio | chr9:14302484:14304654 | 0.27 | 0.23 | top1 | 1 | 0.23 | 4.0e-06 | -5.3 | 5.3 | 1.3e-07 | -0.60 | 0.13 | 0.25 | FALSE |
107 | PL | Ppp2r5d | alternative TSS | ENSRNOT00000022862 | 0.11 | 0.10 | top1 | 1 | 0.10 | 2.9e-08 | -5.2 | 5.2 | 1.6e-07 | -0.57 | 0.33 | 0.67 | FALSE |
108 | PL | RGD1561662 | gene expression | ENSRNOG00000015297 | 0.09 | 0.09 | top1 | 1 | 0.09 | 1.3e-07 | -5.3 | 5.3 | 1.0e-07 | -0.53 | 0.12 | 0.88 | FALSE |
109 | PL | Rrp36 | gene expression | ENSRNOG00000017836 | 0.47 | 0.55 | lasso | 64 | 0.56 | 7.9e-51 | -5.2 | 5.3 | 1.4e-07 | -0.59 | 0.37 | 0.63 | FALSE |
110 | PL | Cul7 | gene expression | ENSRNOG00000017857 | 0.27 | 0.24 | blup | 1229 | 0.25 | 7.4e-19 | -5.1 | 5.3 | 1.5e-07 | -0.57 | 0.38 | 0.62 | FALSE |
111 | PL | Hsp90ab1 | gene expression | ENSRNOG00000019834 | 0.11 | 0.11 | top1 | 1 | 0.11 | 1.6e-08 | -6.0 | -6.0 | 2.0e-09 | 0.94 | 0.14 | 0.86 | TRUE |
112 | PL | NA | gene expression | ENSRNOG00000069108 | 0.10 | 0.07 | blup | 1677 | 0.09 | 2.1e-07 | 4.8 | 5.3 | 1.1e-07 | -0.44 | 0.58 | 0.42 | FALSE |
113 | PL | Klhdc3 | intron excision ratio | chr9:14302484:14304654 | 0.32 | 0.38 | top1 | 1 | 0.38 | 1.2e-30 | -5.1 | 5.1 | 2.8e-07 | -0.60 | 0.44 | 0.56 | FALSE |
114 | PL | Klhdc3 | intron excision ratio | chr9:14304118:14304654 | 0.12 | 0.11 | blup | 1280 | 0.11 | 5.1e-09 | -5.0 | -5.4 | 7.2e-08 | 0.53 | 0.38 | 0.62 | FALSE |
115 | PL | Trerf1 | intron excision ratio | chr9:13760250:13761689 | 0.09 | 0.09 | top1 | 1 | 0.09 | 1.3e-07 | -5.2 | -5.2 | 1.6e-07 | 0.57 | 0.35 | 0.61 | FALSE |
h2: Heritability estimate for the given transcriptomic model. PP3: Posterior probability of two distinct causal variants. PP4: Posterior probability of a single shared causal variant. joint: Whether the RNA phenotype is in the joint model.