Hub : Traits : BMI without tail :

chr9:12,682,987-16,264,314

Trait: BMI without tail

Best TWAS P=1.965534e-09 · Best GWAS P=1.441641e-09 conditioned to 1

Associated models

# Tissue Gene Modality RNA phenotype h2 eQTL R2 model # weights model R2 model R2 P eQTL GWAS Z TWAS Z TWAS P Top SNP corr PP3 PP4 joint
1 Adipose Ubr2 alternative polyA ENSRNOT00000100833 0.02 0.00 blup 1694 0.01 4.7e-02 -4.9 -5.4 6.6e-08 0.50 0.36 0.30 TRUE
2 Adipose Ppp2r5d alternative TSS ENSRNOT00000108773 0.09 0.09 lasso 18 0.09 8.0e-10 -5.0 -5.3 1.3e-07 0.55 0.42 0.58 FALSE
3 Adipose Ppp2r5d gene expression ENSRNOG00000016849 0.04 0.02 top1 1 0.02 1.6e-03 -5.1 -5.1 2.6e-07 0.59 0.05 0.04 FALSE
4 Adipose Rrp36 gene expression ENSRNOG00000017836 0.40 0.44 blup 1253 0.44 2.1e-53 -5.1 5.2 1.5e-07 -0.59 0.36 0.64 FALSE
5 Adipose Mrpl2 gene expression ENSRNOG00000018057 0.05 0.01 enet 81 0.03 4.3e-04 -4.6 -5.1 3.4e-07 0.57 0.36 0.35 TRUE
6 Adipose Klc4 gene expression ENSRNOG00000018168 0.05 0.03 blup 1222 0.04 6.0e-05 -5.1 5.4 7.8e-08 -0.49 0.41 0.58 FALSE
7 Adipose Slc29a1 gene expression ENSRNOG00000019752 0.14 0.11 top1 1 0.11 2.6e-12 -5.8 -5.8 7.0e-09 0.98 0.36 0.64 FALSE
8 Adipose Cdc5l gene expression ENSRNOG00000019975 0.07 0.08 top1 1 0.08 3.0e-09 -6.0 -6.0 2.2e-09 0.96 0.16 0.84 TRUE
9 Adipose Aars2 gene expression ENSRNOG00000025808 0.24 0.18 top1 1 0.18 3.2e-19 -5.8 -5.8 7.0e-09 0.98 0.36 0.64 FALSE
10 Adipose Ptk7 gene expression ENSRNOG00000039976 0.20 0.18 enet 181 0.18 2.2e-19 -5.1 5.2 1.7e-07 -0.57 0.37 0.63 FALSE
11 Adipose Klhdc3 isoform ratio ENSRNOT00000023979 0.03 0.03 top1 1 0.03 2.8e-04 -5.1 5.1 2.7e-07 -0.60 0.07 0.07 FALSE
12 Adipose Klhdc3 isoform ratio ENSRNOT00000102730 0.04 0.03 top1 1 0.03 2.1e-04 -5.1 -5.1 2.7e-07 0.59 0.07 0.08 FALSE
13 Adipose Klhdc3 intron excision ratio chr9:14302484:14304654 0.09 0.10 top1 1 0.10 3.3e-11 -5.1 5.1 2.6e-07 -0.60 0.43 0.57 FALSE
14 Adipose Trerf1 intron excision ratio chr9:13668682:13673744 0.04 0.03 top1 1 0.03 7.5e-04 -5.2 5.2 2.4e-07 -0.58 0.06 0.04 FALSE
15 Adipose Pex6 mRNA stability ENSRNOG00000016655 0.07 0.06 blup 1332 0.06 1.1e-07 -5.1 -5.3 1.1e-07 0.57 0.40 0.60 FALSE
16 Adipose Ppp2r5d mRNA stability ENSRNOG00000016849 0.03 0.02 top1 1 0.02 3.2e-03 -5.1 5.1 2.8e-07 -0.60 0.05 0.04 FALSE
17 Adipose Rrp36 mRNA stability ENSRNOG00000017836 0.03 0.02 top1 1 0.03 7.7e-04 -5.2 5.2 2.4e-07 -0.61 0.07 0.08 FALSE
18 Adipose Aars2 mRNA stability ENSRNOG00000025808 0.14 0.13 top1 1 0.13 2.2e-14 -5.8 -5.8 7.0e-09 0.97 0.36 0.64 FALSE
19 BLA Ppp2r5d alternative TSS ENSRNOT00000022862 0.22 0.21 blup 1338 0.22 7.7e-12 -5.1 5.4 6.6e-08 -0.55 0.39 0.61 FALSE
20 BLA Ppp2r5d alternative TSS ENSRNOT00000108773 0.23 0.22 blup 1338 0.23 8.3e-13 -5.1 -5.4 6.6e-08 0.55 0.39 0.61 FALSE
21 BLA Rrp36 gene expression ENSRNOG00000017836 0.46 0.50 blup 1256 0.52 6.7e-32 -5.2 5.1 2.7e-07 -0.58 0.38 0.62 FALSE
22 BLA Klc4 gene expression ENSRNOG00000018168 0.10 0.12 top1 1 0.12 4.4e-07 -5.3 5.3 1.0e-07 -0.61 0.21 0.69 FALSE
23 BLA Nfkbie gene expression ENSRNOG00000019907 0.12 0.06 enet 46 0.07 1.8e-04 4.4 -5.2 1.7e-07 0.76 0.56 0.35 TRUE
24 BLA Mrps10 gene expression ENSRNOG00000022609 0.51 0.40 blup 1740 0.41 1.3e-23 -4.9 5.5 4.0e-08 -0.55 0.34 0.66 FALSE
25 BLA Klhdc3 intron excision ratio chr9:14304118:14304654 0.15 0.14 top1 1 0.14 1.1e-07 -5.1 -5.1 2.7e-07 0.60 0.43 0.55 FALSE
26 BLA Trerf1 intron excision ratio chr9:13710850:13768409 0.11 0.08 top1 1 0.08 5.4e-05 -5.3 5.3 9.3e-08 -0.59 0.15 0.36 FALSE
27 BLA Trerf1 intron excision ratio chr9:13760250:13761689 0.05 0.05 top1 1 0.05 1.2e-03 -5.3 -5.3 9.5e-08 0.55 0.08 0.06 FALSE
28 Brain Bicral gene expression ENSRNOG00000016229 0.44 0.35 enet 135 0.38 3.1e-37 -4.8 5.1 3.5e-07 -0.40 0.91 0.09 FALSE
29 Brain Pex6 gene expression ENSRNOG00000016655 0.36 0.44 top1 1 0.44 3.2e-44 -5.3 -5.3 1.1e-07 0.60 0.25 0.75 FALSE
30 Brain Klhdc3 gene expression ENSRNOG00000017495 0.09 0.08 top1 1 0.08 1.6e-07 -5.1 5.1 2.6e-07 -0.61 0.43 0.57 FALSE
31 Brain Mrpl2 gene expression ENSRNOG00000018057 0.04 0.03 blup 1225 0.03 6.5e-04 -5.3 -5.3 1.1e-07 0.55 0.36 0.58 FALSE
32 Brain Klc4 gene expression ENSRNOG00000018168 0.73 0.67 lasso 52 0.67 2.5e-84 -5.2 5.2 2.5e-07 -0.60 0.39 0.61 FALSE
33 Brain Srf gene expression ENSRNOG00000018232 0.04 0.01 blup 1046 0.02 4.5e-03 -5.3 5.3 1.1e-07 -0.51 0.34 0.60 FALSE
34 Brain Hsp90ab1 gene expression ENSRNOG00000019834 0.10 0.03 blup 2011 0.06 2.4e-06 -5.7 -5.3 1.3e-07 0.86 0.26 0.74 TRUE
35 Brain Bysl gene expression ENSRNOG00000049121 0.05 0.05 top1 1 0.05 3.0e-05 -5.3 5.3 1.2e-07 -0.57 0.09 0.76 FALSE
36 Brain Ubr2 isoform ratio ENSRNOT00000094973 0.07 0.05 top1 1 0.05 2.0e-05 -5.3 -5.3 1.1e-07 0.59 0.28 0.68 FALSE
37 Brain Ubr2 isoform ratio ENSRNOT00000111742 0.10 0.10 top1 1 0.10 3.0e-09 -5.3 5.3 9.5e-08 -0.59 0.26 0.74 FALSE
38 Brain Cnpy3 intron excision ratio chr9:14237487:14242286 0.02 0.02 top1 1 0.02 3.8e-03 -5.2 5.2 2.2e-07 -0.60 0.06 0.05 FALSE
39 Brain Klhdc3 intron excision ratio chr9:14302484:14303967 0.14 0.15 top1 1 0.15 3.1e-14 -5.3 -5.3 1.1e-07 0.60 0.24 0.76 FALSE
40 Brain Klhdc3 intron excision ratio chr9:14302484:14304654 0.38 0.41 lasso 56 0.42 1.2e-41 -5.2 5.3 1.2e-07 -0.57 0.36 0.64 FALSE
41 Brain Klhdc3 intron excision ratio chr9:14304118:14304654 0.11 0.11 blup 1283 0.13 9.9e-12 -5.2 -5.4 6.5e-08 0.55 0.40 0.60 FALSE
42 Brain Trerf1 intron excision ratio chr9:13760250:13761689 0.11 0.11 top1 1 0.11 3.6e-10 -5.2 -5.2 2.5e-07 0.59 0.46 0.54 FALSE
43 Brain Trerf1 intron excision ratio chr9:13768495:13856943 0.06 0.07 top1 1 0.07 3.6e-07 -5.2 5.2 1.7e-07 -0.58 0.35 0.59 FALSE
44 Brain Rrp36 mRNA stability ENSRNOG00000017836 0.10 0.12 top1 1 0.12 7.3e-11 -5.2 5.2 2.5e-07 -0.60 0.42 0.58 FALSE
45 Brain Cul7 mRNA stability ENSRNOG00000017857 0.15 0.18 blup 1232 0.18 1.2e-16 -5.2 -5.3 1.2e-07 0.59 0.40 0.60 FALSE
46 Brain Cdc5l mRNA stability ENSRNOG00000019975 0.05 0.03 blup 1996 0.03 4.9e-04 -4.2 -5.3 8.9e-08 0.74 0.73 0.19 TRUE
47 Eye Guca1b gene expression ENSRNOG00000015623 0.87 0.24 blup 1723 0.38 7.6e-07 -4.8 -5.5 3.8e-08 0.54 0.38 0.59 FALSE
48 IL Rrp36 gene expression ENSRNOG00000017836 0.49 0.36 top1 1 0.36 1.2e-09 -5.2 5.2 2.3e-07 -0.59 0.32 0.49 FALSE
49 IL Cul7 gene expression ENSRNOG00000017857 0.28 0.24 top1 1 0.24 1.7e-06 -5.3 5.3 9.6e-08 -0.60 0.11 0.27 FALSE
50 IL Nfkbie gene expression ENSRNOG00000019907 0.26 0.08 blup 2019 0.11 1.5e-03 -5.7 -5.8 7.5e-09 0.87 0.33 0.60 FALSE
51 IL Cdc5l gene expression ENSRNOG00000019975 0.38 0.23 enet 21 0.24 1.6e-06 3.3 -5.2 2.2e-07 0.51 0.81 0.16 TRUE
52 IL Mrps10 gene expression ENSRNOG00000022609 0.39 0.31 lasso 5 0.34 6.8e-09 -5.3 5.2 2.3e-07 -0.59 0.34 0.66 FALSE
53 IL Klhdc3 intron excision ratio chr9:14302484:14304654 0.32 0.17 blup 1277 0.24 2.0e-06 -5.3 5.4 6.2e-08 -0.54 0.41 0.59 FALSE
54 LHb Ppp2r5d alternative TSS ENSRNOT00000022862 0.22 0.15 blup 1331 0.15 2.2e-04 -5.1 5.4 6.3e-08 -0.54 0.40 0.55 FALSE
55 LHb Ppp2r5d alternative TSS ENSRNOT00000108773 0.23 0.16 blup 1331 0.17 9.6e-05 -5.1 -5.4 7.2e-08 0.55 0.40 0.56 FALSE
56 LHb Cnpy3 gene expression ENSRNOG00000016315 0.14 0.15 top1 1 0.15 2.0e-04 -5.3 -5.3 1.5e-07 0.60 0.08 0.06 FALSE
57 LHb Pex6 gene expression ENSRNOG00000016655 0.26 0.21 top1 1 0.21 1.0e-05 -5.3 -5.3 1.3e-07 0.59 0.11 0.19 FALSE
58 LHb Rrp36 gene expression ENSRNOG00000017836 0.40 0.39 top1 1 0.39 3.2e-10 -5.1 5.1 2.9e-07 -0.59 0.42 0.52 FALSE
59 LHb Cul7 gene expression ENSRNOG00000017857 0.35 0.25 lasso 3 0.31 5.4e-08 -5.3 5.5 3.2e-08 -0.65 0.38 0.61 FALSE
60 LHb Klc4 gene expression ENSRNOG00000018168 0.18 0.03 blup 1220 0.12 9.6e-04 -5.2 5.4 7.5e-08 -0.53 0.36 0.52 FALSE
61 LHb NA gene expression ENSRNOG00000064080 0.92 0.42 enet 26 0.45 6.1e-12 3.5 5.2 2.4e-07 -0.81 0.94 0.06 FALSE
62 LHb Tcte1 gene expression ENSRNOG00000065569 0.25 0.06 blup 1995 0.08 7.2e-03 4.3 5.2 1.9e-07 -0.76 0.39 0.36 FALSE
63 LHb Klhdc3 intron excision ratio chr9:14304118:14304654 0.29 0.09 top1 1 0.09 4.3e-03 -5.1 -5.1 2.6e-07 0.58 0.07 0.05 FALSE
64 Liver Gnmt alternative polyA ENSRNOT00000072812 0.17 0.21 lasso 39 0.21 3.0e-23 -5.1 -5.1 3.6e-07 0.58 0.39 0.61 FALSE
65 Liver Gnmt gene expression ENSRNOG00000016349 0.35 0.32 blup 1350 0.33 3.2e-37 -5.1 5.3 9.5e-08 -0.57 0.38 0.62 FALSE
66 Liver Pex6 gene expression ENSRNOG00000016655 0.47 0.44 enet 339 0.45 1.0e-54 -5.1 -5.1 3.0e-07 0.60 0.38 0.62 FALSE
67 Liver Rrp36 gene expression ENSRNOG00000017836 0.37 0.41 blup 1253 0.42 7.4e-50 -5.1 5.1 2.8e-07 -0.60 0.37 0.63 FALSE
68 Liver Hsp90ab1 gene expression ENSRNOG00000019834 0.05 0.04 top1 1 0.04 4.4e-05 -5.5 -5.5 3.9e-08 0.98 0.37 0.13 FALSE
69 Liver Nfkbie gene expression ENSRNOG00000019907 0.04 0.01 top1 1 0.01 7.9e-03 -5.5 -5.5 3.9e-08 0.98 0.06 0.03 FALSE
70 Liver Mrps10 gene expression ENSRNOG00000022609 0.76 0.52 top1 1 0.52 1.3e-67 -5.3 5.3 1.0e-07 -0.56 0.16 0.84 FALSE
71 Liver Aars2 gene expression ENSRNOG00000025808 0.26 0.22 lasso 26 0.25 2.2e-27 -5.8 -5.9 4.3e-09 0.93 0.25 0.75 FALSE
72 Liver Capn11 gene expression ENSRNOG00000026025 0.26 0.26 top1 1 0.26 1.0e-28 -5.8 -5.8 7.0e-09 0.95 0.36 0.64 FALSE
73 Liver NA gene expression ENSRNOG00000064080 0.22 0.20 enet 23 0.21 2.3e-23 -5.5 5.8 5.9e-09 -0.91 0.26 0.74 FALSE
74 Liver Ubr2 isoform ratio ENSRNOT00000094973 0.02 0.00 top1 1 0.00 9.6e-02 -5.1 -5.1 2.6e-07 0.60 0.05 0.03 FALSE
75 Liver Ubr2 isoform ratio ENSRNOT00000111742 0.05 0.02 enet 16 0.03 2.7e-04 -5.1 5.1 2.7e-07 -0.59 0.47 0.52 FALSE
76 Liver Slc29a1 isoform ratio ENSRNOT00000111451 0.06 0.06 top1 1 0.06 1.7e-07 -5.5 -5.5 3.9e-08 0.98 0.72 0.24 FALSE
77 Liver Klc4 intron excision ratio chr9:14342948:14343345 0.02 0.02 top1 1 0.02 2.2e-03 -5.1 -5.1 2.6e-07 0.61 0.04 0.03 FALSE
78 Liver Slc29a1 intron excision ratio chr9:15399733:15405034 0.19 0.20 top1 1 0.20 2.2e-21 -5.5 -5.5 3.9e-08 0.97 0.75 0.25 FALSE
79 Liver Slc29a1 intron excision ratio chr9:15403262:15405034 0.12 0.15 top1 1 0.15 8.0e-16 -5.5 5.5 3.9e-08 -0.94 0.75 0.25 FALSE
80 Liver Cnpy3 mRNA stability ENSRNOG00000016315 0.04 0.04 top1 1 0.04 4.6e-05 -5.1 -5.1 2.8e-07 0.60 0.16 0.17 FALSE
81 Liver Mea1 mRNA stability ENSRNOG00000017144 0.06 0.07 top1 1 0.07 6.4e-08 -5.1 -5.1 2.6e-07 0.61 0.43 0.56 FALSE
82 Liver Aars2 mRNA stability ENSRNOG00000025808 0.13 0.11 enet 112 0.13 2.8e-14 -5.3 -5.6 1.8e-08 0.92 0.32 0.69 FALSE
83 NAcc Ppp2r5d alternative TSS ENSRNOT00000022862 0.09 0.11 top1 1 0.11 1.8e-08 -5.3 5.3 1.5e-07 -0.60 0.31 0.68 FALSE
84 NAcc Ppp2r5d alternative TSS ENSRNOT00000108773 0.10 0.13 top1 1 0.13 9.0e-10 -5.3 -5.3 1.5e-07 0.60 0.32 0.68 FALSE
85 NAcc Rrp36 gene expression ENSRNOG00000017836 0.35 0.39 lasso 34 0.42 4.1e-34 -5.1 5.2 2.5e-07 -0.58 0.36 0.64 FALSE
86 NAcc Cul7 gene expression ENSRNOG00000017857 0.17 0.17 top1 1 0.17 2.4e-12 -5.1 5.1 2.9e-07 -0.60 0.44 0.56 FALSE
87 NAcc Hsp90ab1 gene expression ENSRNOG00000019834 0.05 0.04 top1 1 0.04 3.1e-04 -5.8 -5.8 5.1e-09 0.96 0.10 0.14 FALSE
88 NAcc NA gene expression ENSRNOG00000064080 0.76 0.59 enet 82 0.63 1.0e-59 4.4 5.1 2.8e-07 -0.79 1.00 0.00 FALSE
89 NAcc Ubr2 isoform ratio ENSRNOT00000111742 0.03 0.03 top1 1 0.03 1.8e-03 -5.2 5.2 2.0e-07 -0.59 0.06 0.04 FALSE
90 NAcc Trerf1 intron excision ratio chr9:13710850:13768409 0.11 0.06 blup 1881 0.09 4.1e-07 -5.1 5.4 8.2e-08 -0.51 0.47 0.53 FALSE
91 NAcc Trerf1 intron excision ratio chr9:13760250:13761689 0.10 0.11 top1 1 0.11 1.7e-08 -5.3 -5.3 1.5e-07 0.57 0.34 0.65 FALSE
92 NAcc Trerf1 intron excision ratio chr9:13768495:13856943 0.07 0.08 top1 1 0.08 1.9e-06 -5.3 5.3 9.3e-08 -0.57 0.22 0.63 FALSE
93 NAcc Rrp36 mRNA stability ENSRNOG00000017836 0.05 0.04 lasso 79 0.04 3.4e-04 -5.2 5.1 3.0e-07 -0.59 0.36 0.59 FALSE
94 NAcc Cul7 mRNA stability ENSRNOG00000017857 0.08 0.03 top1 1 0.03 1.3e-03 -5.2 -5.2 2.4e-07 0.59 0.05 0.05 FALSE
95 OFC Vegfa alternative TSS ENSRNOT00000026637 0.26 0.12 top1 1 0.12 7.1e-04 -5.9 -5.9 3.8e-09 0.97 0.06 0.10 FALSE
96 OFC Vegfa alternative TSS ENSRNOT00000083811 0.28 0.14 top1 1 0.14 4.1e-04 -5.9 5.9 3.8e-09 -0.96 0.07 0.12 FALSE
97 OFC Mrps10 alternative TSS ENSRNOT00000087971 0.22 0.16 top1 1 0.16 1.3e-04 -5.3 -5.3 9.6e-08 0.57 0.10 0.20 FALSE
98 OFC Mrps10 alternative TSS ENSRNOT00000116536 0.22 0.17 top1 1 0.17 8.1e-05 -5.3 5.3 9.6e-08 -0.56 0.10 0.22 FALSE
99 OFC Bicral gene expression ENSRNOG00000016229 0.23 0.08 blup 1674 0.09 3.1e-03 -4.6 5.4 6.6e-08 -0.48 0.40 0.34 FALSE
100 OFC Pex6 gene expression ENSRNOG00000016655 0.57 0.35 lasso 3 0.35 3.9e-09 -5.1 -5.2 2.0e-07 -0.57 0.40 0.60 TRUE
101 OFC Rrp36 gene expression ENSRNOG00000017836 0.57 0.26 enet 11 0.35 4.2e-09 -5.1 5.3 1.1e-07 -0.45 0.40 0.60 FALSE
102 OFC Cul7 gene expression ENSRNOG00000017857 0.18 0.05 enet 11 0.12 9.5e-04 -4.7 5.4 5.4e-08 -0.58 0.29 0.40 TRUE
103 OFC Slc29a1 gene expression ENSRNOG00000019752 0.16 0.03 top1 1 0.03 8.3e-02 -5.8 5.8 5.0e-09 -0.91 0.10 0.05 FALSE
104 OFC Mrps10 isoform ratio ENSRNOT00000087971 0.19 0.08 top1 1 0.08 5.6e-03 -5.3 -5.3 9.6e-08 0.57 0.09 0.08 FALSE
105 OFC Mrps10 isoform ratio ENSRNOT00000116536 0.27 0.12 top1 1 0.12 7.1e-04 -5.3 5.3 9.6e-08 -0.57 0.09 0.12 FALSE
106 OFC Klhdc3 intron excision ratio chr9:14302484:14304654 0.27 0.23 top1 1 0.23 4.0e-06 -5.3 5.3 1.3e-07 -0.60 0.13 0.25 FALSE
107 PL Ppp2r5d alternative TSS ENSRNOT00000022862 0.11 0.10 top1 1 0.10 2.9e-08 -5.2 5.2 1.6e-07 -0.57 0.33 0.67 FALSE
108 PL RGD1561662 gene expression ENSRNOG00000015297 0.09 0.09 top1 1 0.09 1.3e-07 -5.3 5.3 1.0e-07 -0.53 0.12 0.88 FALSE
109 PL Rrp36 gene expression ENSRNOG00000017836 0.47 0.55 lasso 64 0.56 7.9e-51 -5.2 5.3 1.4e-07 -0.59 0.37 0.63 FALSE
110 PL Cul7 gene expression ENSRNOG00000017857 0.27 0.24 blup 1229 0.25 7.4e-19 -5.1 5.3 1.5e-07 -0.57 0.38 0.62 FALSE
111 PL Hsp90ab1 gene expression ENSRNOG00000019834 0.11 0.11 top1 1 0.11 1.6e-08 -6.0 -6.0 2.0e-09 0.94 0.14 0.86 TRUE
112 PL NA gene expression ENSRNOG00000069108 0.10 0.07 blup 1677 0.09 2.1e-07 4.8 5.3 1.1e-07 -0.44 0.58 0.42 FALSE
113 PL Klhdc3 intron excision ratio chr9:14302484:14304654 0.32 0.38 top1 1 0.38 1.2e-30 -5.1 5.1 2.8e-07 -0.60 0.44 0.56 FALSE
114 PL Klhdc3 intron excision ratio chr9:14304118:14304654 0.12 0.11 blup 1280 0.11 5.1e-09 -5.0 -5.4 7.2e-08 0.53 0.38 0.62 FALSE
115 PL Trerf1 intron excision ratio chr9:13760250:13761689 0.09 0.09 top1 1 0.09 1.3e-07 -5.2 -5.2 1.6e-07 0.57 0.35 0.61 FALSE

h2: Heritability estimate for the given transcriptomic model. PP3: Posterior probability of two distinct causal variants. PP4: Posterior probability of a single shared causal variant. joint: Whether the RNA phenotype is in the joint model.