Best TWAS P = 5.98e-08 · Best GWAS P= 1.58e-07 conditioned to 1.00e+00
| Tissue | Gene | RNA modality | RNA phenotype | h2 | # weights | Model R2 | Model R2 P | TWAS Z | TWAS P | Coloc P | Joint |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Adipose | LOC134481955 | gene expression | LOC134481955 | 0.04 | 1158 | 0.03 | 1.6e-04 | 5.33 | 9.84e-08 | 0.43 | FALSE |
| Brain | Cgrrf1 | gene expression | Cgrrf1 | 0.08 | 2370 | 0.1 | 1.7e-09 | -5.42 | 5.98e-08 | 0.66 | TRUE |
| Brain | Gmfb | gene expression | Gmfb | 0.19 | 1 | 0.21 | 6.2e-19 | 5.21 | 1.88e-07 | 0.83 | FALSE |
| Brain | Samd4a | mRNA stability | Samd4a | 0.04 | 2521 | 0.03 | 4.1e-04 | -5.34 | 9.35e-08 | 0.57 | FALSE |
| Liver | Bmp4 | alternative TSS | NM_012827.2 | 0.02 | 1172 | 0.02 | 2.0e-03 | -5.29 | 1.24e-07 | 0.36 | FALSE |
| Liver | Gmfb | alternative TSS | NM_031032.2 | 0.13 | 90 | 0.12 | 1.4e-13 | 5.23 | 1.65e-07 | 0.66 | FALSE |
| Liver | Gmfb | alternative TSS | XM_063274691.1 | 0.13 | 103 | 0.13 | 5.8e-14 | -5.38 | 7.53e-08 | 0.66 | FALSE |
| NAcc | Bmp4 | alternative TSS | NM_012827.2 | 0.01 | 1172 | 0.01 | 4.2e-02 | -5.26 | 1.46e-07 | 0.28 | FALSE |
| NAcc | Bmp4 | alternative TSS | XM_006251748.5 | 0.01 | 1172 | 0.01 | 1.8e-02 | 5.4 | 6.52e-08 | 0.48 | FALSE |
| NAcc | Cgrrf1 | intron excision ratio | chr15_22582670_22588012 | 0.07 | 2370 | 0.1 | 1.6e-15 | 5.23 | 1.70e-07 | 0.61 | FALSE |