Hub : Traits : Liver weight, right : →

chr1:258,394,596-260,518,987

Trait: Liver weight, right

Best TWAS P=1.491312e-08 · Best GWAS P=9.715627e-09 conditioned to 1

Associated models

#	Tissue	Gene	Modality	RNA phenotype	h2	eQTL R2	model	# weights	model R2	model R2 P	eQTL GWAS Z	TWAS Z	TWAS P	Top SNP corr	PP3	PP4	joint
1	BLA	Sfxn4	gene expression	ENSRNOG00000036572	0.07	0.02	top1	1	0.02	2.1e-02	-5.2	5.2	2.5e-07	-0.83	0.06	0.05	FALSE
2	Brain	Cacul1	isoform ratio	ENSRNOT00000050617	0.14	0.11	top1	1	0.11	3.3e-10	-5.6	5.6	1.7e-08	-0.95	0.09	0.91	FALSE
3	Brain	Cacul1	intron excision ratio	chr1:259677583:259686255	0.12	0.08	enet	36	0.10	1.6e-09	-5.2	5.2	2.1e-07	-0.25	0.16	0.84	TRUE
4	Liver	Cacul1	isoform ratio	ENSRNOT00000050617	0.03	0.02	top1	1	0.02	1.3e-03	-5.1	5.1	2.8e-07	-0.94	0.07	0.04	TRUE
5	Liver	Cacul1	mRNA stability	ENSRNOG00000009954	0.03	0.01	top1	1	0.01	1.4e-02	-5.7	5.7	1.5e-08	-0.94	0.05	0.06	TRUE
6	NAcc	Prlhr	gene expression	ENSRNOG00000009922	0.14	0.09	blup	1904	0.11	2.3e-08	-5.7	5.1	2.6e-07	-0.94	0.18	0.82	FALSE
7	NAcc	Cacul1	isoform ratio	ENSRNOT00000050617	0.05	0.05	blup	1781	0.05	9.6e-05	-5.2	5.4	8.6e-08	-0.94	0.32	0.63	FALSE
8	NAcc	Cacul1	isoform ratio	ENSRNOT00000084760	0.05	0.05	blup	1781	0.05	1.6e-04	-5.1	-5.3	8.8e-08	0.94	0.33	0.62	FALSE
9	OFC	Rab11fip2	gene expression	ENSRNOG00000009523	0.30	0.23	lasso	17	0.27	5.1e-07	-5.4	-5.4	8.7e-08	0.98	0.33	0.66	FALSE
10	OFC	Rab11fip2	mRNA stability	ENSRNOG00000009523	0.16	0.19	top1	1	0.19	2.9e-05	-5.4	-5.4	6.7e-08	0.89	0.12	0.07	FALSE
11	PL	Rab11fip2	gene expression	ENSRNOG00000009523	0.06	0.04	enet	76	0.05	1.5e-04	-5.2	-5.3	1.1e-07	0.91	0.36	0.64	FALSE
12	PL	Cacul1	isoform ratio	ENSRNOT00000050617	0.03	0.02	top1	1	0.02	1.8e-02	-5.1	5.1	3.1e-07	-0.90	0.06	0.04	FALSE

h2: Heritability estimate for the given transcriptomic model. PP3: Posterior probability of two distinct causal variants. PP4: Posterior probability of a single shared causal variant. joint: Whether the RNA phenotype is in the joint model.