Hub : Traits : Length with tail : ←

chr20:2,357,921-3,884,026

Trait: Length with tail

Best TWAS P=7.673343e-08 · Best GWAS P=3.784122e-06 conditioned to 0.8302206

Associated models

#	Tissue	Gene	Modality	RNA phenotype	h2	eQTL R2	model	# weights	model R2	model R2 P	eQTL GWAS Z	TWAS Z	TWAS P	Top SNP corr	PP3	PP4	joint
1	Adipose	RT1-N3	alternative polyA	ENSRNOT00000001035	0.16	0.12	enet	23	0.14	1.5e-15	-4.4	-5.1	3.4e-07	0.95	0.26	0.74	FALSE
2	Adipose	RT1-S3	intron excision ratio	chr20:2624215:2624418	0.35	0.06	lasso	39	0.10	5.6e-11	3.8	-5.1	2.9e-07	0.76	0.66	0.33	FALSE
3	Adipose	RT1-S3	intron excision ratio	chr20:2633040:2633243	0.35	0.06	lasso	61	0.10	5.9e-11	3.8	-5.1	2.8e-07	0.76	0.66	0.33	FALSE
4	Adipose	RT1-S3	intron excision ratio	chr20:2691672:2691881	0.57	0.22	enet	61	0.30	1.2e-33	4.0	5.2	2.1e-07	-0.85	0.77	0.21	FALSE
5	Adipose	NA	intron excision ratio	chr20:2691672:2691881	0.56	0.22	enet	214	0.30	1.1e-33	3.9	5.1	3.0e-07	-0.78	0.76	0.22	FALSE
6	Adipose	RT1-T24-1	intron excision ratio	chr20:2691672:2691881	0.59	0.22	enet	61	0.30	1.2e-33	4.0	5.2	2.1e-07	-0.85	0.78	0.21	FALSE
7	Adipose	RT1-T24-4	intron excision ratio	chr20:2691672:2691881	0.58	0.22	enet	61	0.30	1.2e-33	4.0	5.2	2.1e-07	-0.85	0.78	0.21	FALSE
8	BLA	RT1-N3	gene expression	ENSRNOG00000000795	0.66	0.30	enet	109	0.49	2.6e-29	3.9	5.2	2.4e-07	-0.72	0.69	0.30	FALSE
9	BLA	Gtf2h4	gene expression	ENSRNOG00000000831	0.19	0.11	blup	1269	0.14	3.6e-08	-4.2	5.1	3.0e-07	-0.86	0.27	0.73	FALSE
10	BLA	Ddr1	gene expression	ENSRNOG00000057125	0.29	0.16	blup	1360	0.22	7.9e-12	-4.6	5.3	9.2e-08	-0.86	0.27	0.73	FALSE
11	Brain	RT1-N3	alternative TSS	ENSRNOT00000001035	0.14	0.05	enet	9	0.06	1.5e-06	-4.4	-5.2	1.8e-07	0.92	0.27	0.72	FALSE
12	Brain	RT1-N3	alternative TSS	ENSRNOT00000115132	0.13	0.05	enet	9	0.06	2.2e-06	-4.4	5.2	1.8e-07	-0.90	0.27	0.72	FALSE
13	Brain	RT1-N3	gene expression	ENSRNOG00000000795	0.62	0.35	lasso	25	0.54	3.8e-59	-4.4	5.2	1.8e-07	-0.83	0.28	0.72	FALSE
14	Brain	RT1-T24-1	isoform ratio	ENSRNOT00000078454	0.08	0.04	blup	1275	0.06	2.7e-06	-4.5	-5.3	1.4e-07	0.86	0.28	0.71	FALSE
15	Eye	NA	gene expression	ENSRNOG00000064836	0.56	-0.01	blup	986	0.06	4.3e-02	3.9	-5.2	2.2e-07	0.76	0.15	0.22	FALSE
16	Eye	NA	intron excision ratio	chr20:2626584:2657802	0.57	0.02	blup	1011	0.10	1.5e-02	-4.5	-5.3	1.4e-07	0.85	0.16	0.28	FALSE
17	IL	Dhx16	gene expression	ENSRNOG00000030157	0.56	0.25	blup	1376	0.28	2.1e-07	-4.5	-5.1	2.7e-07	0.97	0.30	0.69	FALSE
18	IL	NA	gene expression	ENSRNOG00000031607	0.76	0.48	enet	26	0.48	3.3e-13	-4.5	-5.2	2.2e-07	0.90	0.24	0.76	FALSE
19	IL	NA	isoform ratio	ENSRNOT00000050099	0.21	0.02	blup	1004	0.09	3.0e-03	-4.5	-5.3	1.5e-07	0.89	0.23	0.54	FALSE
20	IL	Abcf1	intron excision ratio	chr20:2802656:2807786	0.20	0.08	enet	13	0.14	2.6e-04	-4.6	-5.3	1.1e-07	0.67	0.27	0.50	FALSE
21	LHb	NA	alternative polyA	ENSRNOT00000048535	0.19	0.03	blup	1000	0.11	1.4e-03	-4.5	5.3	1.5e-07	-0.92	0.22	0.48	FALSE
22	LHb	NA	alternative polyA	ENSRNOT00000050099	0.22	0.06	blup	1000	0.14	3.6e-04	-4.5	-5.2	1.6e-07	0.93	0.24	0.57	FALSE
23	LHb	RT1-N3	gene expression	ENSRNOG00000000795	0.34	0.02	enet	10	0.15	2.3e-04	-4.6	5.3	1.2e-07	-0.85	0.32	0.44	FALSE
24	Liver	NA	intron excision ratio	chr20:2651658:2657802	0.05	0.00	enet	7	0.00	5.5e-01	3.8	-5.1	2.7e-07	0.86	0.11	0.18	FALSE
25	PL	AABR07044375.1	gene expression	ENSRNOG00000050215	0.57	0.23	enet	156	0.32	1.3e-24	-4.5	5.4	7.7e-08	-0.88	0.26	0.73	TRUE
26	PL	RT1-T18	gene expression	ENSRNOG00000062067	0.44	0.38	enet	50	0.40	4.7e-32	-4.5	-5.1	3.4e-07	0.96	0.22	0.77	FALSE
27	PL	NA	intron excision ratio	chr20:2691672:2741756	0.04	0.01	enet	5	0.02	1.7e-02	-4.5	-5.3	1.5e-07	0.87	0.20	0.48	FALSE
28	PL	RT1-T24-1	intron excision ratio	chr20:2691672:2741756	0.04	0.01	enet	7	0.02	1.7e-02	-4.2	-5.1	2.7e-07	0.88	0.25	0.45	FALSE
29	PL	RT1-T24-4	intron excision ratio	chr20:2691672:2741756	0.04	0.01	enet	5	0.02	2.1e-02	-4.5	-5.3	1.5e-07	0.87	0.24	0.45	FALSE

h2: Heritability estimate for the given transcriptomic model. PP3: Posterior probability of two distinct causal variants. PP4: Posterior probability of a single shared causal variant. joint: Whether the RNA phenotype is in the joint model.