Best TWAS P=2.12e-09 · Best GWAS P=1.20e-08 conditioned to 1.00e+00
Tissue | Gene | RNA modality | RNA phenotype | h2 | # weights | Model R2 | Model R2 P | TWAS Z | TWAS P | Coloc P | Joint |
---|---|---|---|---|---|---|---|---|---|---|---|
Adipose | N4bp2l2 | alternative polyA | ENSRNOT00000111844 | 0.14 | 1 | 0.12 | 7.1e-13 | 5.32 | 1.05e-07 | 0.9 | FALSE |
Adipose | N4bp2l2 | alternative polyA | ENSRNOT00000118063 | 0.14 | 1 | 0.12 | 3.9e-13 | -5.32 | 1.05e-07 | 0.9 | FALSE |
Adipose | B3glct | alternative polyA | ENSRNOT00000083484 | 0.06 | 19 | 0.03 | 2.4e-04 | 5.63 | 1.77e-08 | 0.09 | FALSE |
Adipose | B3glct | alternative polyA | ENSRNOT00000116254 | 0.06 | 18 | 0.03 | 1.9e-04 | -5.86 | 4.65e-09 | 0.1 | FALSE |
Adipose | Pet100 | alternative TSS | ENSRNOT00000071928 | 0.22 | 116 | 0.13 | 3.4e-14 | 5.13 | 2.96e-07 | 0.77 | FALSE |
Adipose | Pet100 | alternative TSS | ENSRNOT00000107172 | 0.22 | 122 | 0.13 | 2.6e-14 | -5.15 | 2.64e-07 | 0.76 | FALSE |
Adipose | Hsph1 | gene expression | ENSRNOG00000000902 | 0.56 | 55 | 0.22 | 1.8e-24 | -5.4 | 6.57e-08 | 0.48 | FALSE |
Adipose | Xab2 | gene expression | ENSRNOG00000000988 | 0.14 | 1 | 0.05 | 2.2e-06 | -5.12 | 2.98e-07 | 0.46 | FALSE |
Adipose | Trappc5 | gene expression | ENSRNOG00000001003 | 0.09 | 1 | 0.03 | 9.9e-05 | -5.51 | 3.51e-08 | 0.4 | FALSE |
Adipose | Evi5l | gene expression | ENSRNOG00000001034 | 0.09 | 1 | -0 | 4.2e-01 | 5.58 | 2.44e-08 | 0.07 | FALSE |
Adipose | Insr | gene expression | ENSRNOG00000029986 | 0.13 | 1 | 0.02 | 4.3e-03 | 5.21 | 1.86e-07 | 0.03 | FALSE |
Adipose | N4bp2l1 | gene expression | ENSRNOG00000059322 | 0.32 | 16 | 0.24 | 1.2e-26 | -5.39 | 7.18e-08 | 0.96 | FALSE |
Adipose | Pet100 | isoform ratio | ENSRNOT00000071928 | 0.23 | 64 | 0.13 | 1.8e-14 | 5.18 | 2.28e-07 | 0.83 | FALSE |
Adipose | Pet100 | isoform ratio | ENSRNOT00000107172 | 0.23 | 66 | 0.13 | 2.6e-14 | -5.22 | 1.79e-07 | 0.84 | FALSE |
Adipose | Zfp958 | isoform ratio | ENSRNOT00000102786 | 0.03 | 169 | 0.01 | 6.9e-03 | 5.26 | 1.45e-07 | 0.46 | FALSE |
Adipose | Zfp958 | intron excision ratio | chr12:3971128:3971331 | 0.03 | 1113 | 0.01 | 2.8e-02 | 5.1 | 3.37e-07 | 0.39 | TRUE |
Adipose | Fry | mRNA stability | ENSRNOG00000000894 | 0.08 | 2970 | 0.05 | 2.0e-06 | -5.29 | 1.22e-07 | 0.04 | FALSE |
Adipose | Snapc2 | mRNA stability | ENSRNOG00000001056 | 0.11 | 19 | 0.01 | 5.0e-02 | -5.44 | 5.40e-08 | 0.13 | TRUE |
Adipose | Elavl1 | mRNA stability | ENSRNOG00000001069 | 0.16 | 2406 | 0.07 | 9.4e-09 | 5.22 | 1.77e-07 | 0.72 | FALSE |
BLA | Pet100 | alternative TSS | ENSRNOT00000110166 | 0.11 | 1 | 0.05 | 7.7e-04 | -5.27 | 1.39e-07 | 0.05 | FALSE |
BLA | Wdr95 | gene expression | ENSRNOG00000000904 | 0.15 | 2270 | 0.03 | 1.5e-02 | -5.23 | 1.72e-07 | 0.36 | FALSE |
BLA | Insr | gene expression | ENSRNOG00000029986 | 0.59 | 1546 | 0.39 | 5.5e-22 | 5.35 | 8.61e-08 | 0.56 | FALSE |
BLA | Camsap3 | isoform ratio | ENSRNOT00000101379 | 0.13 | 1 | 0.06 | 4.4e-04 | 5.27 | 1.39e-07 | 0.06 | FALSE |
BLA | AABR07035218.1 | intron excision ratio | chr12:5974685:5975080 | 0.36 | 2412 | 0.18 | 9.1e-10 | 5.25 | 1.54e-07 | 0.8 | FALSE |
BLA | Pet100 | intron excision ratio | chr12:1680794:1680963 | 0.36 | 13 | 0.19 | 1.7e-10 | -5.49 | 3.92e-08 | 0.84 | FALSE |
BLA | Pet100 | intron excision ratio | chr12:1680995:1681508 | 0.35 | 11 | 0.2 | 9.8e-11 | 5.41 | 6.21e-08 | 0.83 | TRUE |
BLA | ENSRNOG00000068541 | intron excision ratio | chr12:3870992:3873703 | 0.08 | 1116 | 0.04 | 3.3e-03 | -5.2 | 2.04e-07 | 0.64 | FALSE |
BLA | Katnal1 | mRNA stability | ENSRNOG00000047618 | 0.21 | 2320 | 0.07 | 1.7e-04 | -5.34 | 9.45e-08 | 0.74 | FALSE |
Brain | Rxfp2 | gene expression | ENSRNOG00000000897 | 0.13 | 3311 | 0.12 | 3.5e-11 | -5.93 | 2.95e-09 | 0.33 | FALSE |
Brain | Elavl1 | gene expression | ENSRNOG00000001069 | 0.07 | 2406 | 0.02 | 4.4e-03 | -5.11 | 3.23e-07 | 0.6 | FALSE |
Brain | Arhgef18 | gene expression | ENSRNOG00000028090 | 0.12 | 11 | 0.08 | 1.2e-07 | -5.56 | 2.74e-08 | 0.78 | FALSE |
Brain | N4bp2l1 | gene expression | ENSRNOG00000059322 | 0.06 | 2 | 0.05 | 3.5e-05 | -5.35 | 8.66e-08 | 0.93 | FALSE |
Brain | Rxfp2 | intron excision ratio | chr12:4945988:4950591 | 0.07 | 6 | 0.02 | 7.0e-03 | -5.99 | 2.12e-09 | 0.32 | TRUE |
Brain | Rxfp2 | intron excision ratio | chr12:4945988:4950702 | 0.05 | 5 | 0.02 | 7.8e-03 | 5.89 | 3.81e-09 | 0.31 | FALSE |
Brain | Trappc5 | intron excision ratio | chr12:1737769:1740114 | 0.05 | 18 | 0.03 | 5.1e-04 | -5.76 | 8.56e-09 | 0.4 | FALSE |
Brain | ENSRNOG00000068541 | intron excision ratio | chr12:3870992:3873703 | 0.13 | 14 | 0.1 | 1.0e-09 | -5.12 | 3.11e-07 | 0.74 | FALSE |
Brain | Elavl1 | mRNA stability | ENSRNOG00000001069 | 0.19 | 22 | 0.07 | 2.6e-07 | 5.13 | 2.96e-07 | 0.69 | FALSE |
Brain | Insr | mRNA stability | ENSRNOG00000029986 | 0.72 | 150 | 0.6 | 8.8e-69 | 5.12 | 2.99e-07 | 0.88 | FALSE |
Brain | Katnal1 | mRNA stability | ENSRNOG00000047618 | 0.33 | 2320 | 0.32 | 2.0e-30 | -5.72 | 1.10e-08 | 0.81 | FALSE |
Eye | Fry | gene expression | ENSRNOG00000000894 | 0.41 | 2972 | 0.18 | 9.6e-04 | -5.42 | 5.90e-08 | 0.11 | FALSE |
Eye | Elavl1 | intron excision ratio | chr12:2667464:2684652 | 0.69 | 30 | 0.31 | 1.3e-05 | 5.52 | 3.40e-08 | 0.64 | FALSE |
IL | Katnal1 | gene expression | ENSRNOG00000047618 | 0.47 | 2315 | 0.13 | 5.7e-04 | 5.97 | 2.39e-09 | 0.42 | FALSE |
IL | Insr | intron excision ratio | chr12:1257822:1307450 | 0.73 | 1 | 0.5 | 6.5e-14 | 5.49 | 4.13e-08 | 0.87 | FALSE |
IL | Katnal1 | mRNA stability | ENSRNOG00000047618 | 0.13 | 1 | 0.09 | 4.4e-03 | -5.39 | 7.11e-08 | 0.08 | FALSE |
LHb | Rxfp2 | gene expression | ENSRNOG00000000897 | 0.27 | 9 | 0.22 | 4.8e-06 | -5.34 | 9.12e-08 | 0.25 | FALSE |
Liver | N4bp2l2 | alternative polyA | ENSRNOT00000111844 | 0.1 | 681 | 0.07 | 2.3e-08 | 5.55 | 2.82e-08 | 0.8 | FALSE |
Liver | N4bp2l2 | alternative polyA | ENSRNOT00000118063 | 0.1 | 681 | 0.07 | 1.5e-08 | -5.55 | 2.90e-08 | 0.8 | FALSE |
Liver | Mcoln1 | gene expression | ENSRNOG00000000975 | 0.09 | 39 | 0.04 | 1.7e-05 | 5.48 | 4.25e-08 | 0.88 | FALSE |
Liver | N4bp2l1 | gene expression | ENSRNOG00000059322 | 0.21 | 107 | 0.16 | 2.5e-17 | -5.13 | 2.95e-07 | 0.94 | FALSE |
Liver | Stxbp2 | isoform ratio | ENSRNOT00000107607 | 0.15 | 10 | 0.09 | 5.9e-10 | -5.27 | 1.34e-07 | 0.63 | FALSE |
Liver | N4bp2l1 | isoform ratio | ENSRNOT00000110394 | 0.06 | 587 | 0.04 | 6.9e-05 | 5.29 | 1.24e-07 | 0.83 | FALSE |
Liver | AABR07035218.1 | intron excision ratio | chr12:5974685:5975080 | 0.13 | 1 | 0.11 | 4.1e-12 | 5.16 | 2.47e-07 | 0.56 | FALSE |
Liver | Insr | intron excision ratio | chr12:1257822:1307450 | 0.44 | 94 | 0.21 | 3.2e-23 | 5.23 | 1.65e-07 | 0.89 | FALSE |
Liver | Pet100 | intron excision ratio | chr12:1680794:1680963 | 0.21 | 1823 | 0.09 | 1.9e-10 | -5.21 | 1.87e-07 | 0.56 | FALSE |
Liver | Zfp958 | intron excision ratio | chr12:3953566:3967085 | 0.09 | 1 | 0.04 | 1.5e-05 | 5.12 | 3.10e-07 | 0.45 | FALSE |
Liver | Zfp958 | intron excision ratio | chr12:3971128:3971331 | 0.07 | 1 | 0.03 | 7.0e-04 | 5.13 | 2.91e-07 | 0.12 | FALSE |
Liver | ENSRNOG00000068541 | intron excision ratio | chr12:3870992:3871195 | 0.09 | 1 | 0.04 | 1.0e-05 | 5.11 | 3.25e-07 | 0.36 | FALSE |
Liver | ENSRNOG00000068541 | intron excision ratio | chr12:3870992:3873703 | 0.18 | 1 | 0.1 | 7.7e-11 | -5.16 | 2.46e-07 | 0.79 | FALSE |
Liver | ENSRNOG00000068541 | intron excision ratio | chr12:3871255:3873703 | 0.14 | 1 | 0.09 | 6.4e-10 | 5.13 | 2.91e-07 | 0.76 | FALSE |
Liver | Elavl1 | mRNA stability | ENSRNOG00000001069 | 0.16 | 4 | 0.05 | 3.3e-06 | 5.16 | 2.51e-07 | 0.72 | FALSE |
Liver | N4bp2l2 | mRNA stability | ENSRNOG00000001108 | 0.03 | 1 | 0.02 | 2.0e-03 | 5.35 | 8.65e-08 | 0.13 | FALSE |
NAcc | Pet100 | alternative TSS | ENSRNOT00000071928 | 0.08 | 1 | 0.03 | 1.4e-03 | 5.56 | 2.70e-08 | 0.32 | FALSE |
NAcc | Rxfp2 | gene expression | ENSRNOG00000000897 | 0.08 | 3309 | 0.06 | 1.4e-05 | -5.47 | 4.51e-08 | 0.06 | FALSE |
NAcc | Alox5ap | gene expression | ENSRNOG00000000907 | 0.06 | 1 | 0.06 | 1.3e-05 | -5.09 | 3.49e-07 | 0.18 | FALSE |
NAcc | Stxbp2 | gene expression | ENSRNOG00000000994 | 0.1 | 1 | 0.07 | 9.6e-06 | -5.56 | 2.70e-08 | 0.59 | TRUE |
NAcc | Arhgef18 | gene expression | ENSRNOG00000028090 | 0.13 | 1531 | 0.08 | 1.3e-06 | -5.1 | 3.39e-07 | 0.31 | FALSE |
NAcc | Lrrc8e | gene expression | ENSRNOG00000028460 | 0.31 | 12 | 0.07 | 1.2e-05 | -5.54 | 3.03e-08 | 0.93 | FALSE |
NAcc | Katnal1 | gene expression | ENSRNOG00000047618 | 0.26 | 2319 | 0.2 | 8.3e-15 | 5.54 | 3.00e-08 | 0.81 | FALSE |
NAcc | Trappc5 | isoform ratio | ENSRNOT00000001327 | 0.11 | 38 | 0.04 | 2.9e-04 | -5.57 | 2.60e-08 | 0.85 | FALSE |
NAcc | Trappc5 | isoform ratio | ENSRNOT00000111016 | 0.09 | 29 | 0.03 | 5.1e-03 | 5.51 | 3.60e-08 | 0.82 | FALSE |
NAcc | Snapc2 | mRNA stability | ENSRNOG00000001056 | 0.13 | 1 | 0.06 | 1.3e-05 | -5.61 | 2.04e-08 | 0.93 | FALSE |
NAcc | Brca2 | mRNA stability | ENSRNOG00000001111 | 0.14 | 42 | 0.09 | 4.2e-07 | 5.41 | 6.25e-08 | 0.95 | FALSE |
NAcc | Insr | mRNA stability | ENSRNOG00000029986 | 0.37 | 29 | 0.23 | 1.8e-17 | 5.32 | 1.06e-07 | 0.88 | FALSE |
OFC | Stxbp2 | gene expression | ENSRNOG00000000994 | 0.43 | 1 | 0.14 | 2.8e-04 | -5.52 | 3.46e-08 | 0.1 | FALSE |
OFC | ENSRNOG00000069263 | gene expression | ENSRNOG00000069263 | 0.24 | 1 | 0.12 | 1.0e-03 | -5.3 | 1.13e-07 | 0.15 | FALSE |
OFC | Insr | intron excision ratio | chr12:1257822:1307450 | 0.64 | 1 | 0.28 | 2.2e-07 | 5.49 | 4.13e-08 | 0.69 | FALSE |
OFC | Insr | mRNA stability | ENSRNOG00000029986 | 0.82 | 1 | 0.37 | 1.0e-09 | 5.45 | 4.99e-08 | 0.8 | FALSE |
PL | ENSRNOG00000067247 | gene expression | ENSRNOG00000067247 | 0.1 | 2289 | 0.07 | 3.7e-06 | 5.91 | 3.47e-09 | 0.8 | FALSE |
PL | Pet100 | intron excision ratio | chr12:1679962:1680708 | 0.08 | 1 | 0.03 | 3.6e-03 | -5.12 | 3.10e-07 | 0.06 | FALSE |
PL | Pet100 | intron excision ratio | chr12:1680794:1680963 | 0.49 | 1822 | 0.18 | 2.5e-13 | -5.32 | 1.06e-07 | 0.57 | FALSE |
PL | Insr | mRNA stability | ENSRNOG00000029986 | 0.65 | 32 | 0.49 | 2.3e-42 | 5.19 | 2.14e-07 | 0.88 | FALSE |
PL | Katnal1 | mRNA stability | ENSRNOG00000047618 | 0.09 | 5 | 0.09 | 5.0e-07 | -5.48 | 4.26e-08 | 0.8 | FALSE |