Best TWAS P=5.692263e-09 · Best GWAS P=0.1063042 conditioned to 1
| # | Tissue | Gene | Modality | RNA phenotype | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | PL | Epha6 | alternative TSS | ENSRNOT00000047310 | 0.03 | 0.03 | enet | 548 | 0.03 | 0.0034 | -0.55 | -5.8 | 5.7e-09 | 0.97 | 0.04 | 0.03 | TRUE |
| 2 | PL | Epha6 | alternative TSS | ENSRNOT00000097751 | 0.04 | 0.03 | enet | 379 | 0.03 | 0.0012 | -0.55 | 5.8 | 6.4e-09 | -0.97 | 0.04 | 0.03 | FALSE |
h2: Heritability estimate for the given transcriptomic model. PP3: Posterior probability of two distinct causal variants. PP4: Posterior probability of a single shared causal variant. joint: Whether the RNA phenotype is in the joint model.