Best TWAS P=5.554875e-08 · Best GWAS P=1.335474e-07 conditioned to 1
# | Tissue | Gene | Modality | RNA phenotype | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | Adipose | Tuba1b | alternative polyA | ENSRNOT00000081355 | 0.64 | 0.53 | blup | 1068 | 0.54 | 1.6e-71 | 4.8 | 5.1 | 3.1e-07 | 0.99 | 0.52 | 0.48 | FALSE |
2 | Adipose | Tuba1b | alternative polyA | ENSRNOT00000107560 | 0.33 | 0.29 | blup | 1068 | 0.30 | 2.4e-33 | 4.8 | -5.1 | 2.7e-07 | -0.99 | 0.51 | 0.49 | FALSE |
3 | Adipose | Tmbim6 | alternative polyA | ENSRNOT00000088176 | 0.03 | 0.01 | enet | 143 | 0.01 | 9.7e-03 | 5.1 | -5.1 | 3.0e-07 | -0.98 | 0.42 | 0.44 | FALSE |
4 | Adipose | Tmbim6 | alternative polyA | ENSRNOT00000105911 | 0.03 | 0.01 | top1 | 1 | 0.01 | 8.7e-03 | 5.2 | 5.2 | 2.0e-07 | 0.98 | 0.03 | 0.03 | FALSE |
5 | Adipose | Spats2 | gene expression | ENSRNOG00000052307 | 0.09 | 0.07 | blup | 1037 | 0.07 | 4.9e-08 | 5.2 | 5.2 | 2.6e-07 | 0.99 | 0.50 | 0.50 | FALSE |
6 | Adipose | Prpf40b | gene expression | ENSRNOG00000052539 | 0.17 | 0.14 | blup | 931 | 0.14 | 1.1e-15 | 5.3 | -5.3 | 1.2e-07 | -0.99 | 0.47 | 0.53 | FALSE |
7 | Adipose | Tmbim6 | gene expression | ENSRNOG00000055579 | 0.32 | 0.17 | enet | 87 | 0.17 | 4.7e-18 | 5.1 | 5.1 | 2.8e-07 | 0.98 | 0.46 | 0.54 | FALSE |
8 | Adipose | Dip2b | gene expression | ENSRNOG00000056106 | 0.11 | 0.13 | lasso | 33 | 0.13 | 4.4e-14 | -4.9 | -5.2 | 2.6e-07 | -0.35 | 0.55 | 0.45 | FALSE |
9 | Adipose | Fmnl3 | gene expression | ENSRNOG00000056297 | 0.06 | 0.03 | top1 | 1 | 0.03 | 2.1e-04 | 5.1 | -5.1 | 2.8e-07 | -0.98 | 0.06 | 0.07 | FALSE |
10 | Adipose | Nckap5l | gene expression | ENSRNOG00000056678 | 0.03 | 0.01 | top1 | 1 | 0.01 | 1.2e-02 | 5.2 | -5.2 | 1.8e-07 | -0.97 | 0.03 | 0.04 | FALSE |
11 | Adipose | NA | gene expression | ENSRNOG00000063063 | 0.02 | 0.01 | top1 | 1 | 0.01 | 8.9e-03 | 5.1 | 5.1 | 3.1e-07 | 0.99 | 0.03 | 0.03 | FALSE |
12 | Adipose | Tuba1b | isoform ratio | ENSRNOT00000110990 | 0.71 | 0.60 | blup | 1068 | 0.61 | 1.9e-86 | 4.8 | -5.1 | 3.0e-07 | -0.99 | 0.52 | 0.48 | FALSE |
13 | Adipose | Kmt2d | isoform ratio | ENSRNOT00000077502 | 0.36 | 0.21 | blup | 1283 | 0.22 | 1.5e-23 | 5.1 | 5.1 | 2.7e-07 | 0.98 | 0.48 | 0.52 | FALSE |
14 | Adipose | Kmt2d | isoform ratio | ENSRNOT00000111826 | 0.36 | 0.21 | blup | 1283 | 0.22 | 1.5e-23 | 5.0 | -5.1 | 2.7e-07 | -0.98 | 0.48 | 0.52 | FALSE |
15 | Adipose | Spats2 | intron excision ratio | chr7:130322428:130323680 | 0.04 | 0.03 | blup | 1037 | 0.03 | 3.9e-04 | 4.8 | -5.2 | 2.1e-07 | -0.99 | 0.51 | 0.45 | FALSE |
16 | Adipose | Prpf40b | mRNA stability | ENSRNOG00000052539 | 0.03 | 0.01 | top1 | 1 | 0.01 | 7.7e-03 | 5.2 | -5.2 | 1.6e-07 | -0.99 | 0.03 | 0.03 | FALSE |
17 | Adipose | Hdac7 | mRNA stability | ENSRNOG00000055597 | 0.18 | 0.16 | enet | 238 | 0.17 | 5.4e-18 | 5.0 | -5.2 | 1.5e-07 | -0.78 | 0.72 | 0.28 | TRUE |
18 | Adipose | Bcdin3d | mRNA stability | ENSRNOG00000058430 | 0.05 | 0.04 | top1 | 1 | 0.04 | 6.3e-05 | 5.1 | -5.1 | 3.1e-07 | -0.96 | 0.08 | 0.09 | FALSE |
19 | BLA | Tuba1b | alternative polyA | ENSRNOT00000081355 | 0.55 | 0.40 | blup | 1068 | 0.43 | 5.8e-25 | 5.1 | -5.1 | 3.4e-07 | -1.00 | 0.51 | 0.49 | FALSE |
20 | BLA | Tuba1b | alternative polyA | ENSRNOT00000107560 | 0.51 | 0.37 | blup | 1068 | 0.40 | 6.4e-23 | 5.1 | 5.1 | 3.3e-07 | 1.00 | 0.51 | 0.49 | FALSE |
21 | BLA | Asic1 | alternative polyA | ENSRNOT00000077175 | 0.25 | 0.24 | blup | 956 | 0.28 | 2.7e-15 | 4.8 | -5.3 | 1.4e-07 | -0.85 | 0.66 | 0.34 | FALSE |
22 | BLA | Asic1 | alternative polyA | ENSRNOT00000088191 | 0.25 | 0.26 | blup | 956 | 0.28 | 1.7e-15 | 4.8 | 5.2 | 1.5e-07 | 0.84 | 0.67 | 0.33 | FALSE |
23 | BLA | Tuba1b | alternative TSS | ENSRNOT00000081355 | 0.11 | 0.09 | top1 | 1 | 0.09 | 1.0e-05 | 5.1 | 5.1 | 2.8e-07 | 0.99 | 0.17 | 0.19 | FALSE |
24 | BLA | Tuba1b | alternative TSS | ENSRNOT00000110990 | 0.11 | 0.09 | top1 | 1 | 0.09 | 1.3e-05 | 5.1 | -5.1 | 2.8e-07 | -0.99 | 0.17 | 0.19 | FALSE |
25 | BLA | Tmbim6 | alternative TSS | ENSRNOT00000088176 | 0.04 | 0.01 | blup | 1023 | 0.01 | 5.2e-02 | 5.1 | 5.3 | 9.1e-08 | 0.98 | 0.35 | 0.39 | FALSE |
26 | BLA | Faim2 | gene expression | ENSRNOG00000045554 | 0.22 | 0.20 | top1 | 1 | 0.20 | 6.9e-11 | 5.2 | -5.2 | 1.6e-07 | -0.94 | 0.29 | 0.71 | FALSE |
27 | BLA | Spats2 | gene expression | ENSRNOG00000052307 | 0.24 | 0.16 | blup | 1037 | 0.18 | 4.2e-10 | 5.1 | -5.3 | 1.3e-07 | -0.99 | 0.49 | 0.51 | FALSE |
28 | BLA | Tuba1b | gene expression | ENSRNOG00000053468 | 0.05 | 0.03 | top1 | 1 | 0.03 | 9.5e-03 | 5.2 | 5.2 | 1.8e-07 | 0.99 | 0.04 | 0.04 | FALSE |
29 | BLA | Dnajc22 | gene expression | ENSRNOG00000053498 | 0.07 | 0.01 | blup | 1039 | 0.03 | 1.0e-02 | 5.2 | 5.2 | 2.3e-07 | 0.99 | 0.47 | 0.47 | FALSE |
30 | BLA | Kcnh3 | gene expression | ENSRNOG00000057315 | 0.29 | 0.29 | blup | 987 | 0.31 | 4.0e-17 | 5.1 | -5.3 | 1.4e-07 | -0.99 | 0.47 | 0.53 | FALSE |
31 | BLA | Tuba1b | isoform ratio | ENSRNOT00000081355 | 0.88 | 0.68 | enet | 82 | 0.73 | 8.5e-56 | 4.8 | 5.1 | 3.4e-07 | 0.97 | 0.52 | 0.48 | FALSE |
32 | BLA | Tuba1b | isoform ratio | ENSRNOT00000107560 | 0.36 | 0.28 | blup | 1068 | 0.31 | 4.7e-17 | 4.7 | -5.1 | 3.3e-07 | -0.99 | 0.52 | 0.48 | FALSE |
33 | BLA | Tuba1b | isoform ratio | ENSRNOT00000110990 | 0.19 | 0.15 | blup | 1068 | 0.16 | 4.2e-09 | 5.1 | 5.1 | 3.3e-07 | 0.99 | 0.51 | 0.49 | FALSE |
34 | BLA | Asic1 | isoform ratio | ENSRNOT00000077175 | 0.05 | 0.04 | top1 | 1 | 0.04 | 3.5e-03 | 5.3 | -5.3 | 1.1e-07 | -0.86 | 0.04 | 0.08 | FALSE |
35 | BLA | Asic1 | isoform ratio | ENSRNOT00000088191 | 0.05 | 0.04 | top1 | 1 | 0.04 | 2.1e-03 | 5.3 | 5.3 | 1.1e-07 | 0.86 | 0.05 | 0.09 | FALSE |
36 | BLA | Tuba1b | intron excision ratio | chr7:130092476:130093543 | 0.15 | 0.11 | top1 | 1 | 0.11 | 2.9e-06 | 5.1 | 5.1 | 3.5e-07 | 0.99 | 0.42 | 0.39 | FALSE |
37 | BLA | Tuba1b | intron excision ratio | chr7:130115057:130116812 | 0.08 | 0.05 | lasso | 4 | 0.08 | 4.6e-05 | 5.1 | -5.3 | 9.7e-08 | -0.31 | 0.50 | 0.46 | TRUE |
38 | BLA | Ccdc65 | intron excision ratio | chr7:129864926:129868238 | 0.13 | 0.16 | top1 | 1 | 0.16 | 9.9e-09 | 5.1 | 5.1 | 3.4e-07 | 0.97 | 0.47 | 0.52 | FALSE |
39 | BLA | Asic1 | intron excision ratio | chr7:130799643:130800530 | 0.04 | 0.01 | blup | 956 | 0.02 | 3.5e-02 | 5.3 | 5.2 | 2.4e-07 | 0.81 | 0.39 | 0.30 | FALSE |
40 | BLA | Asic1 | intron excision ratio | chr7:130800022:130800530 | 0.04 | 0.02 | blup | 956 | 0.02 | 3.1e-02 | 5.3 | -5.2 | 2.5e-07 | -0.81 | 0.41 | 0.31 | FALSE |
41 | BLA | Kcnh3 | mRNA stability | ENSRNOG00000057315 | 0.07 | 0.06 | top1 | 1 | 0.06 | 3.1e-04 | 5.1 | -5.1 | 2.8e-07 | -0.99 | 0.06 | 0.06 | FALSE |
42 | BLA | Fkbp11 | mRNA stability | ENSRNOG00000070637 | 0.05 | 0.03 | enet | 11 | 0.06 | 3.2e-04 | 4.8 | -5.4 | 5.6e-08 | -0.81 | 0.60 | 0.34 | TRUE |
43 | Brain | Tuba1b | alternative polyA | ENSRNOT00000081355 | 0.82 | 0.70 | blup | 1068 | 0.71 | 6.8e-93 | 5.1 | -5.2 | 1.7e-07 | -0.99 | 0.47 | 0.53 | FALSE |
44 | Brain | Tuba1b | alternative polyA | ENSRNOT00000107560 | 0.55 | 0.60 | blup | 1068 | 0.61 | 7.2e-72 | 5.1 | 5.2 | 1.6e-07 | 0.99 | 0.47 | 0.53 | FALSE |
45 | Brain | Senp1 | gene expression | ENSRNOG00000022260 | 0.09 | 0.10 | lasso | 1 | 0.11 | 5.4e-10 | 5.1 | 5.1 | 3.6e-07 | 0.94 | 0.61 | 0.39 | FALSE |
46 | Brain | Faim2 | gene expression | ENSRNOG00000045554 | 0.47 | 0.48 | blup | 984 | 0.57 | 6.3e-64 | 5.2 | -5.4 | 6.8e-08 | -0.95 | 0.40 | 0.60 | FALSE |
47 | Brain | Spats2 | gene expression | ENSRNOG00000052307 | 0.13 | 0.15 | lasso | 5 | 0.16 | 1.0e-14 | 5.1 | -5.3 | 1.1e-07 | -0.98 | 0.47 | 0.53 | FALSE |
48 | Brain | Tuba1b | gene expression | ENSRNOG00000053468 | 0.13 | 0.16 | enet | 26 | 0.16 | 1.2e-14 | 5.1 | 5.3 | 1.4e-07 | 0.98 | 0.50 | 0.50 | FALSE |
49 | Brain | Dnajc22 | gene expression | ENSRNOG00000053498 | 0.10 | 0.11 | blup | 1039 | 0.11 | 1.8e-10 | 5.0 | 5.1 | 3.3e-07 | 0.99 | 0.52 | 0.48 | FALSE |
50 | Brain | Gpd1 | gene expression | ENSRNOG00000056457 | 0.12 | 0.14 | blup | 925 | 0.15 | 1.2e-13 | 4.9 | 5.1 | 3.5e-07 | 0.80 | 0.64 | 0.36 | FALSE |
51 | Brain | Nckap5l | gene expression | ENSRNOG00000056678 | 0.04 | 0.01 | blup | 1026 | 0.04 | 2.4e-04 | 5.3 | 5.4 | 7.3e-08 | 0.97 | 0.45 | 0.53 | FALSE |
52 | Brain | Kcnh3 | gene expression | ENSRNOG00000057315 | 0.52 | 0.64 | enet | 108 | 0.68 | 1.1e-84 | 5.1 | -5.3 | 1.5e-07 | -0.99 | 0.46 | 0.54 | FALSE |
53 | Brain | Lima1 | gene expression | ENSRNOG00000059801 | 0.07 | 0.05 | blup | 1126 | 0.06 | 2.2e-06 | 5.0 | -5.2 | 2.1e-07 | -0.84 | 0.58 | 0.42 | FALSE |
54 | Brain | Kmt2d | gene expression | ENSRNOG00000061499 | 0.12 | 0.14 | blup | 1284 | 0.15 | 2.1e-13 | 5.0 | -5.1 | 3.5e-07 | -0.99 | 0.49 | 0.51 | FALSE |
55 | Brain | Smarcd1 | gene expression | ENSRNOG00000061572 | 0.18 | 0.21 | lasso | 9 | 0.22 | 6.0e-20 | 4.8 | 5.2 | 1.7e-07 | 0.85 | 0.65 | 0.35 | FALSE |
56 | Brain | NA | gene expression | ENSRNOG00000061607 | 0.18 | 0.20 | lasso | 22 | 0.20 | 2.8e-18 | 5.1 | 5.4 | 8.3e-08 | 0.99 | 0.45 | 0.55 | FALSE |
57 | Brain | NA | gene expression | ENSRNOG00000064897 | 0.05 | 0.05 | top1 | 1 | 0.05 | 2.1e-05 | 5.2 | -5.2 | 1.8e-07 | -0.99 | 0.32 | 0.54 | FALSE |
58 | Brain | Tuba1b | isoform ratio | ENSRNOT00000081355 | 0.86 | 0.70 | enet | 217 | 0.72 | 1.6e-94 | 5.1 | 5.3 | 1.2e-07 | 0.98 | 0.47 | 0.53 | FALSE |
59 | Brain | Tuba1b | isoform ratio | ENSRNOT00000083156 | 0.88 | 0.71 | lasso | 44 | 0.73 | 6.2e-99 | 5.1 | -5.3 | 9.2e-08 | -0.98 | 0.47 | 0.53 | FALSE |
60 | Brain | Tuba1b | isoform ratio | ENSRNOT00000110990 | 0.30 | 0.33 | blup | 1068 | 0.36 | 7.8e-35 | 5.1 | 5.1 | 2.6e-07 | 0.99 | 0.50 | 0.50 | FALSE |
61 | Brain | Tuba1b | intron excision ratio | chr7:130091808:130091974 | 0.72 | 0.70 | blup | 1068 | 0.72 | 1.2e-95 | 5.1 | -5.2 | 2.3e-07 | -0.99 | 0.47 | 0.53 | FALSE |
62 | Brain | Tuba1b | intron excision ratio | chr7:130114389:130114555 | 0.67 | 0.69 | blup | 1068 | 0.70 | 6.2e-90 | 5.1 | 5.2 | 2.5e-07 | 0.98 | 0.48 | 0.52 | FALSE |
63 | Brain | Rhebl1 | intron excision ratio | chr7:130028333:130029695 | 0.04 | 0.02 | blup | 1258 | 0.02 | 5.0e-03 | 5.1 | -5.1 | 3.2e-07 | -0.99 | 0.44 | 0.44 | FALSE |
64 | Brain | Kcnh3 | intron excision ratio | chr7:130367391:130367495 | 0.03 | 0.02 | blup | 987 | 0.03 | 7.1e-04 | 5.1 | -5.3 | 1.5e-07 | -1.00 | 0.44 | 0.50 | FALSE |
65 | Brain | Spats2 | mRNA stability | ENSRNOG00000052307 | 0.03 | 0.02 | blup | 1037 | 0.03 | 1.6e-03 | 5.3 | 5.2 | 2.6e-07 | 0.99 | 0.46 | 0.46 | FALSE |
66 | Brain | Smarcd1 | mRNA stability | ENSRNOG00000061572 | 0.03 | 0.02 | blup | 940 | 0.02 | 3.1e-03 | 5.0 | 5.1 | 3.0e-07 | 0.82 | 0.51 | 0.35 | FALSE |
67 | Brain | NA | mRNA stability | ENSRNOG00000061607 | 0.14 | 0.11 | lasso | 14 | 0.11 | 2.0e-10 | 5.1 | -5.2 | 2.3e-07 | -0.93 | 0.48 | 0.52 | FALSE |
68 | Brain | Prkag1 | mRNA stability | ENSRNOG00000070180 | 0.10 | 0.12 | blup | 1478 | 0.13 | 5.3e-12 | 5.1 | 5.1 | 3.4e-07 | 0.99 | 0.50 | 0.50 | FALSE |
69 | Eye | Tuba1b | alternative polyA | ENSRNOT00000081355 | 0.60 | 0.49 | enet | 252 | 0.51 | 1.5e-09 | 5.3 | -5.4 | 7.2e-08 | -0.97 | 0.49 | 0.51 | FALSE |
70 | Eye | Tuba1b | alternative polyA | ENSRNOT00000107560 | 0.57 | 0.48 | enet | 595 | 0.50 | 2.8e-09 | 5.3 | 5.2 | 1.9e-07 | 0.96 | 0.49 | 0.50 | FALSE |
71 | Eye | Prpf40b | alternative TSS | ENSRNOT00000091306 | 0.31 | 0.19 | top1 | 1 | 0.19 | 6.6e-04 | 5.1 | -5.1 | 2.8e-07 | -0.99 | 0.06 | 0.06 | FALSE |
72 | Eye | Prpf40b | alternative TSS | ENSRNOT00000113677 | 0.35 | 0.19 | top1 | 1 | 0.19 | 8.5e-04 | 5.1 | 5.1 | 2.8e-07 | 0.99 | 0.06 | 0.06 | FALSE |
73 | Eye | Tuba1b | gene expression | ENSRNOG00000053468 | 0.98 | 0.38 | lasso | 12 | 0.41 | 2.3e-07 | 5.2 | 5.2 | 2.2e-07 | 0.85 | 0.46 | 0.50 | FALSE |
74 | Eye | Dnajc22 | gene expression | ENSRNOG00000053498 | 0.30 | 0.16 | blup | 1039 | 0.22 | 2.9e-04 | 5.2 | 5.2 | 1.7e-07 | 1.00 | 0.40 | 0.42 | FALSE |
75 | Eye | NA | gene expression | ENSRNOG00000070544 | 0.30 | 0.09 | blup | 941 | 0.16 | 1.8e-03 | 5.3 | 5.4 | 8.5e-08 | 0.91 | 0.38 | 0.45 | FALSE |
76 | Eye | Tuba1b | isoform ratio | ENSRNOT00000081355 | 0.76 | 0.49 | blup | 1068 | 0.51 | 1.3e-09 | 5.3 | 5.2 | 2.3e-07 | 1.00 | 0.50 | 0.50 | FALSE |
77 | Eye | Tuba1b | isoform ratio | ENSRNOT00000107560 | 0.21 | 0.10 | blup | 1068 | 0.11 | 1.0e-02 | 4.7 | -5.1 | 2.6e-07 | -1.00 | 0.35 | 0.35 | FALSE |
78 | Eye | Cers5 | intron excision ratio | chr7:130870888:130871949 | 0.26 | 0.09 | blup | 975 | 0.20 | 5.8e-04 | 4.9 | 5.2 | 2.0e-07 | 0.84 | 0.42 | 0.38 | FALSE |
79 | Eye | Cers5 | intron excision ratio | chr7:130872079:130876061 | 0.21 | 0.12 | lasso | 5 | 0.16 | 1.7e-03 | 5.2 | -5.3 | 1.4e-07 | -0.84 | 0.38 | 0.32 | FALSE |
80 | Eye | Tuba1b | intron excision ratio | chr7:130114389:130114555 | 0.66 | 0.44 | enet | 7 | 0.44 | 4.2e-08 | 5.3 | 5.3 | 1.0e-07 | 0.78 | 0.50 | 0.49 | FALSE |
81 | Eye | Asic1 | mRNA stability | ENSRNOG00000059765 | 0.27 | 0.14 | blup | 956 | 0.21 | 3.8e-04 | 4.9 | 5.2 | 2.4e-07 | 0.83 | 0.42 | 0.32 | FALSE |
82 | IL | Tuba1b | alternative polyA | ENSRNOT00000081355 | 0.62 | 0.44 | blup | 1066 | 0.53 | 6.4e-15 | 5.1 | 5.2 | 2.1e-07 | 1.00 | 0.47 | 0.53 | FALSE |
83 | IL | Tuba1b | alternative polyA | ENSRNOT00000107560 | 0.67 | 0.42 | blup | 1066 | 0.46 | 1.2e-12 | 5.1 | -5.2 | 1.7e-07 | -1.00 | 0.47 | 0.53 | FALSE |
84 | IL | Spats2 | gene expression | ENSRNOG00000052307 | 0.18 | 0.17 | top1 | 1 | 0.17 | 6.7e-05 | 5.2 | -5.2 | 2.4e-07 | -0.99 | 0.07 | 0.07 | FALSE |
85 | IL | Kmt2d | gene expression | ENSRNOG00000061499 | 0.21 | 0.11 | top1 | 1 | 0.11 | 1.1e-03 | 5.1 | -5.1 | 3.4e-07 | -0.98 | 0.07 | 0.06 | FALSE |
86 | IL | Tuba1b | isoform ratio | ENSRNOT00000081355 | 0.72 | 0.49 | enet | 14 | 0.57 | 2.0e-16 | 5.1 | 5.1 | 3.3e-07 | 0.99 | 0.48 | 0.52 | FALSE |
87 | IL | Tuba1b | isoform ratio | ENSRNOT00000083156 | 0.24 | 0.17 | enet | 11 | 0.17 | 6.0e-05 | 5.1 | -5.2 | 2.5e-07 | -0.99 | 0.48 | 0.51 | FALSE |
88 | IL | Tuba1b | isoform ratio | ENSRNOT00000110990 | 0.65 | 0.51 | enet | 15 | 0.53 | 6.6e-15 | 5.1 | -5.1 | 3.5e-07 | -0.98 | 0.47 | 0.53 | FALSE |
89 | IL | Ccdc65 | intron excision ratio | chr7:129858008:129863855 | 0.50 | 0.11 | top1 | 1 | 0.11 | 1.1e-03 | 5.1 | -5.1 | 2.8e-07 | -0.98 | 0.10 | 0.06 | FALSE |
90 | LHb | Tuba1b | alternative polyA | ENSRNOT00000081355 | 0.84 | 0.38 | blup | 1065 | 0.43 | 1.7e-11 | 5.1 | 5.2 | 2.4e-07 | 0.99 | 0.47 | 0.53 | FALSE |
91 | LHb | Tuba1b | alternative polyA | ENSRNOT00000107560 | 0.82 | 0.36 | blup | 1065 | 0.42 | 4.1e-11 | 5.1 | -5.1 | 2.6e-07 | -0.99 | 0.48 | 0.52 | FALSE |
92 | LHb | Faim2 | gene expression | ENSRNOG00000045554 | 0.59 | 0.46 | top1 | 1 | 0.46 | 2.9e-12 | 5.1 | -5.1 | 2.8e-07 | -0.94 | 0.41 | 0.58 | FALSE |
93 | LHb | Spats2 | gene expression | ENSRNOG00000052307 | 0.20 | 0.16 | top1 | 1 | 0.16 | 1.6e-04 | 5.1 | -5.1 | 3.2e-07 | -0.99 | 0.08 | 0.07 | FALSE |
94 | LHb | Prph | gene expression | ENSRNOG00000052880 | 0.41 | 0.25 | blup | 1057 | 0.29 | 1.6e-07 | 5.1 | 5.1 | 3.2e-07 | 1.00 | 0.48 | 0.51 | FALSE |
95 | LHb | Dnajc22 | gene expression | ENSRNOG00000053498 | 0.21 | 0.08 | blup | 1036 | 0.10 | 1.9e-03 | 5.1 | 5.1 | 3.1e-07 | 0.99 | 0.33 | 0.37 | FALSE |
96 | LHb | Asic1 | gene expression | ENSRNOG00000059765 | 0.17 | 0.18 | top1 | 1 | 0.18 | 5.7e-05 | 5.1 | -5.1 | 3.4e-07 | -0.86 | 0.06 | 0.08 | FALSE |
97 | LHb | Kmt2d | gene expression | ENSRNOG00000061499 | 0.17 | 0.10 | blup | 1279 | 0.12 | 1.0e-03 | 5.1 | -5.1 | 3.2e-07 | -0.99 | 0.44 | 0.42 | FALSE |
98 | LHb | Prkag1 | gene expression | ENSRNOG00000070180 | 0.41 | 0.23 | top1 | 1 | 0.23 | 2.7e-06 | 5.1 | -5.1 | 2.8e-07 | -0.98 | 0.21 | 0.24 | FALSE |
99 | LHb | Tuba1b | isoform ratio | ENSRNOT00000110990 | 0.80 | 0.57 | lasso | 6 | 0.61 | 3.1e-18 | 5.1 | -5.1 | 2.9e-07 | 0.99 | 0.47 | 0.53 | TRUE |
100 | LHb | Lima1 | intron excision ratio | chr7:130908211:130910972 | 0.15 | 0.03 | enet | 7 | 0.10 | 2.8e-03 | 4.8 | -5.3 | 1.4e-07 | -0.87 | 0.32 | 0.35 | FALSE |
101 | Liver | Tmbim6 | alternative polyA | ENSRNOT00000088176 | 0.06 | 0.05 | enet | 6 | 0.05 | 1.8e-06 | 5.1 | -5.2 | 2.4e-07 | -0.86 | 0.52 | 0.48 | FALSE |
102 | Liver | Tmbim6 | alternative polyA | ENSRNOT00000105911 | 0.06 | 0.04 | enet | 13 | 0.04 | 1.0e-05 | 5.1 | 5.3 | 1.1e-07 | 0.99 | 0.49 | 0.51 | FALSE |
103 | Liver | Spats2 | gene expression | ENSRNOG00000052307 | 0.12 | 0.08 | blup | 1037 | 0.08 | 1.5e-09 | 5.3 | 5.2 | 2.5e-07 | 1.00 | 0.49 | 0.51 | FALSE |
104 | Liver | Dnajc22 | gene expression | ENSRNOG00000053498 | 0.06 | 0.03 | blup | 1039 | 0.03 | 1.2e-04 | 4.7 | 5.1 | 3.2e-07 | 0.99 | 0.53 | 0.46 | FALSE |
105 | Liver | Asic1 | gene expression | ENSRNOG00000059765 | 0.23 | 0.22 | top1 | 1 | 0.22 | 1.0e-23 | 5.1 | -5.1 | 3.1e-07 | -0.88 | 0.36 | 0.64 | FALSE |
106 | Liver | Kmt2d | gene expression | ENSRNOG00000061499 | 0.05 | 0.04 | top1 | 1 | 0.04 | 6.6e-05 | 5.1 | -5.1 | 3.4e-07 | -0.98 | 0.08 | 0.08 | FALSE |
107 | Liver | Tuba1b | isoform ratio | ENSRNOT00000081355 | 0.35 | 0.26 | top1 | 1 | 0.26 | 7.0e-29 | 5.1 | 5.1 | 2.8e-07 | 0.99 | 0.47 | 0.53 | FALSE |
108 | Liver | Tuba1b | isoform ratio | ENSRNOT00000083156 | 0.19 | 0.15 | lasso | 64 | 0.15 | 5.9e-16 | 5.1 | -5.1 | 2.8e-07 | 0.98 | 0.48 | 0.52 | FALSE |
109 | Liver | Tmbim6 | isoform ratio | ENSRNOT00000084674 | 0.09 | 0.08 | enet | 6 | 0.08 | 2.1e-09 | 5.1 | -5.2 | 2.1e-07 | -0.87 | 0.50 | 0.50 | FALSE |
110 | Liver | Tmbim6 | isoform ratio | ENSRNOT00000106863 | 0.04 | 0.03 | top1 | 1 | 0.03 | 6.2e-04 | 5.2 | 5.2 | 2.0e-07 | 0.98 | 0.04 | 0.04 | FALSE |
111 | Liver | Dnajc22 | mRNA stability | ENSRNOG00000053498 | 0.15 | 0.10 | blup | 1039 | 0.11 | 5.2e-12 | 5.1 | -5.1 | 2.9e-07 | -0.99 | 0.50 | 0.50 | FALSE |
112 | Liver | Tmbim6 | mRNA stability | ENSRNOG00000055579 | 0.06 | 0.04 | blup | 1022 | 0.04 | 1.0e-05 | 5.2 | -5.4 | 7.1e-08 | -0.97 | 0.50 | 0.49 | FALSE |
113 | Liver | Bcdin3d | mRNA stability | ENSRNOG00000058430 | 0.05 | 0.03 | top1 | 1 | 0.03 | 2.1e-04 | 5.1 | -5.1 | 2.8e-07 | -0.96 | 0.10 | 0.12 | FALSE |
114 | NAcc | Tuba1b | alternative polyA | ENSRNOT00000081355 | 0.05 | 0.03 | top1 | 1 | 0.03 | 4.5e-03 | 5.1 | 5.1 | 3.1e-07 | 0.99 | 0.04 | 0.04 | FALSE |
115 | NAcc | Faim2 | gene expression | ENSRNOG00000045554 | 0.17 | 0.14 | blup | 983 | 0.19 | 6.3e-14 | 4.8 | -5.3 | 1.1e-07 | -0.86 | 0.71 | 0.29 | FALSE |
116 | NAcc | Spats2 | gene expression | ENSRNOG00000052307 | 0.11 | 0.09 | top1 | 1 | 0.09 | 1.9e-07 | 5.3 | -5.3 | 1.4e-07 | -0.99 | 0.30 | 0.68 | FALSE |
117 | NAcc | Tuba1b | gene expression | ENSRNOG00000053468 | 0.10 | 0.07 | blup | 1068 | 0.07 | 8.1e-06 | 5.0 | 5.1 | 3.5e-07 | 0.99 | 0.53 | 0.47 | FALSE |
118 | NAcc | Ccdc65 | gene expression | ENSRNOG00000058916 | 0.05 | 0.04 | top1 | 1 | 0.04 | 3.5e-04 | 5.1 | -5.1 | 2.8e-07 | -0.97 | 0.08 | 0.06 | FALSE |
119 | NAcc | Kmt2d | gene expression | ENSRNOG00000061499 | 0.06 | 0.06 | top1 | 1 | 0.06 | 5.7e-05 | 5.1 | -5.1 | 2.8e-07 | -0.98 | 0.08 | 0.08 | FALSE |
120 | NAcc | Prkag1 | gene expression | ENSRNOG00000070180 | 0.75 | 0.35 | enet | 68 | 0.37 | 4.1e-29 | 5.1 | -5.3 | 1.2e-07 | -0.97 | 0.44 | 0.56 | FALSE |
121 | NAcc | Tuba1b | isoform ratio | ENSRNOT00000081355 | 0.89 | 0.57 | enet | 26 | 0.60 | 1.3e-54 | 5.1 | 5.2 | 2.0e-07 | 0.98 | 0.47 | 0.53 | FALSE |
122 | NAcc | Tuba1b | isoform ratio | ENSRNOT00000110990 | 0.50 | 0.18 | blup | 1068 | 0.18 | 1.2e-13 | 5.1 | -5.2 | 2.2e-07 | -0.99 | 0.48 | 0.52 | FALSE |
123 | NAcc | Kmt2d | isoform ratio | ENSRNOT00000077502 | 0.16 | 0.18 | enet | 8 | 0.19 | 4.0e-14 | 5.1 | 5.2 | 2.5e-07 | 0.96 | 0.51 | 0.49 | FALSE |
124 | NAcc | Kmt2d | isoform ratio | ENSRNOT00000111826 | 0.17 | 0.18 | enet | 8 | 0.19 | 3.0e-14 | 5.1 | -5.1 | 2.7e-07 | -0.93 | 0.52 | 0.48 | FALSE |
125 | NAcc | Prpf40b | intron excision ratio | chr7:130452523:130452696 | 0.04 | 0.03 | top1 | 1 | 0.03 | 1.9e-03 | 5.3 | 5.3 | 1.3e-07 | 0.99 | 0.04 | 0.06 | FALSE |
126 | NAcc | Kmt2d | intron excision ratio | chr7:129975357:129980205 | 0.06 | 0.05 | top1 | 1 | 0.05 | 2.2e-04 | 5.1 | -5.1 | 2.8e-07 | -0.98 | 0.08 | 0.08 | FALSE |
127 | NAcc | Prkag1 | intron excision ratio | chr7:129975357:129980205 | 0.05 | 0.05 | top1 | 1 | 0.05 | 2.2e-04 | 5.1 | -5.1 | 2.8e-07 | -0.98 | 0.09 | 0.08 | FALSE |
128 | NAcc | Bcdin3d | mRNA stability | ENSRNOG00000058430 | 0.18 | 0.20 | top1 | 1 | 0.20 | 3.3e-15 | 5.2 | -5.2 | 1.9e-07 | -0.96 | 0.35 | 0.65 | FALSE |
129 | NAcc | Prkag1 | mRNA stability | ENSRNOG00000070180 | 0.11 | 0.08 | top1 | 1 | 0.08 | 2.4e-06 | 5.1 | 5.1 | 2.8e-07 | 0.98 | 0.41 | 0.53 | FALSE |
130 | OFC | Spats2 | gene expression | ENSRNOG00000052307 | 0.30 | 0.17 | top1 | 1 | 0.17 | 8.6e-05 | 5.2 | -5.2 | 2.4e-07 | -0.99 | 0.08 | 0.09 | FALSE |
131 | OFC | Kmt2d | gene expression | ENSRNOG00000061499 | 0.18 | 0.07 | blup | 1279 | 0.08 | 5.7e-03 | 5.1 | -5.1 | 3.5e-07 | -0.99 | 0.38 | 0.34 | FALSE |
132 | OFC | Prkag1 | gene expression | ENSRNOG00000070180 | 0.45 | 0.11 | lasso | 3 | 0.12 | 9.2e-04 | 5.1 | -5.2 | 2.5e-07 | -1.00 | 0.45 | 0.48 | FALSE |
133 | OFC | Kcnh3 | mRNA stability | ENSRNOG00000057315 | 0.36 | 0.05 | top1 | 1 | 0.06 | 2.0e-02 | 5.1 | -5.1 | 2.8e-07 | -1.00 | 0.05 | 0.05 | FALSE |
134 | OFC | Bcdin3d | mRNA stability | ENSRNOG00000058430 | 0.15 | 0.04 | blup | 1027 | 0.05 | 3.0e-02 | 4.7 | -5.4 | 7.6e-08 | -0.93 | 0.33 | 0.29 | TRUE |
135 | OFC | NA | mRNA stability | ENSRNOG00000061607 | 0.12 | 0.03 | top1 | 1 | 0.03 | 7.5e-02 | 5.1 | -5.1 | 2.8e-07 | -0.99 | 0.06 | 0.05 | FALSE |
136 | PL | Tuba1b | alternative polyA | ENSRNOT00000081355 | 0.08 | 0.06 | enet | 7 | 0.06 | 1.9e-05 | 5.3 | -5.3 | 1.1e-07 | -0.96 | 0.52 | 0.48 | FALSE |
137 | PL | Tuba1b | alternative polyA | ENSRNOT00000107560 | 0.07 | 0.06 | top1 | 1 | 0.06 | 2.4e-05 | 5.3 | 5.3 | 1.4e-07 | 0.99 | 0.21 | 0.44 | FALSE |
138 | PL | Spats2 | alternative TSS | ENSRNOT00000097746 | 0.05 | 0.04 | top1 | 1 | 0.04 | 9.0e-04 | 5.3 | 5.3 | 1.2e-07 | 0.99 | 0.05 | 0.07 | FALSE |
139 | PL | Tuba1b | alternative TSS | ENSRNOT00000081355 | 0.06 | 0.03 | blup | 1068 | 0.04 | 1.1e-03 | 5.1 | 5.1 | 2.9e-07 | 0.99 | 0.50 | 0.48 | FALSE |
140 | PL | Tuba1b | alternative TSS | ENSRNOT00000110990 | 0.08 | 0.04 | blup | 1068 | 0.05 | 1.2e-04 | 5.1 | -5.1 | 2.8e-07 | -0.99 | 0.51 | 0.49 | FALSE |
141 | PL | Tuba1c | gene expression | ENSRNOG00000021438 | 0.04 | 0.03 | blup | 1071 | 0.03 | 3.1e-03 | 4.8 | -5.1 | 3.4e-07 | -0.99 | 0.46 | 0.40 | FALSE |
142 | PL | Faim2 | gene expression | ENSRNOG00000045554 | 0.06 | 0.05 | blup | 983 | 0.06 | 3.4e-05 | 4.7 | -5.3 | 1.5e-07 | -0.84 | 0.64 | 0.34 | FALSE |
143 | PL | Spats2 | gene expression | ENSRNOG00000052307 | 0.30 | 0.20 | blup | 1037 | 0.23 | 3.8e-17 | 5.1 | -5.1 | 3.5e-07 | -0.99 | 0.47 | 0.53 | FALSE |
144 | PL | Tuba1b | gene expression | ENSRNOG00000053468 | 0.04 | 0.05 | top1 | 1 | 0.05 | 1.7e-04 | 5.1 | 5.1 | 2.8e-07 | 0.99 | 0.04 | 0.04 | FALSE |
145 | PL | Dnajc22 | gene expression | ENSRNOG00000053498 | 0.04 | 0.03 | top1 | 1 | 0.03 | 3.1e-03 | 5.1 | 5.1 | 2.8e-07 | 0.99 | 0.04 | 0.04 | FALSE |
146 | PL | Mcrs1 | gene expression | ENSRNOG00000054838 | 0.04 | 0.04 | top1 | 1 | 0.04 | 5.0e-04 | 5.2 | 5.2 | 1.8e-07 | 0.99 | 0.06 | 0.09 | FALSE |
147 | PL | Nckap5l | gene expression | ENSRNOG00000056678 | 0.03 | 0.02 | blup | 1025 | 0.03 | 2.5e-03 | 5.0 | 5.4 | 7.0e-08 | 0.95 | 0.43 | 0.46 | FALSE |
148 | PL | Pfkm | gene expression | ENSRNOG00000057988 | 0.08 | 0.09 | top1 | 1 | 0.09 | 1.9e-07 | 5.1 | 5.1 | 3.6e-07 | 0.94 | 0.29 | 0.69 | FALSE |
149 | PL | Kmt2d | gene expression | ENSRNOG00000061499 | 0.40 | 0.29 | blup | 1283 | 0.29 | 2.3e-22 | 5.1 | -5.2 | 2.4e-07 | -1.00 | 0.45 | 0.55 | FALSE |
150 | PL | Prkag1 | gene expression | ENSRNOG00000070180 | 0.39 | 0.39 | enet | 131 | 0.41 | 3.7e-33 | 5.1 | -5.1 | 2.7e-07 | -0.98 | 0.46 | 0.54 | FALSE |
151 | PL | Tuba1b | isoform ratio | ENSRNOT00000081355 | 0.72 | 0.69 | enet | 279 | 0.70 | 2.3e-73 | 5.1 | 5.3 | 1.5e-07 | 0.98 | 0.47 | 0.53 | FALSE |
152 | PL | Tuba1b | isoform ratio | ENSRNOT00000083156 | 0.42 | 0.47 | blup | 1068 | 0.52 | 4.3e-46 | 5.1 | -5.2 | 2.0e-07 | -0.99 | 0.48 | 0.52 | FALSE |
153 | PL | Tuba1b | isoform ratio | ENSRNOT00000107560 | 0.37 | 0.31 | lasso | 13 | 0.32 | 1.6e-24 | 5.0 | -5.3 | 1.1e-07 | 0.82 | 0.47 | 0.53 | TRUE |
154 | PL | Kmt2d | isoform ratio | ENSRNOT00000077502 | 0.29 | 0.26 | blup | 1283 | 0.28 | 4.3e-21 | 5.1 | 5.2 | 2.3e-07 | 1.00 | 0.46 | 0.54 | FALSE |
155 | PL | Kmt2d | isoform ratio | ENSRNOT00000111826 | 0.28 | 0.26 | blup | 1283 | 0.28 | 1.2e-21 | 5.1 | -5.2 | 2.4e-07 | -1.00 | 0.46 | 0.54 | FALSE |
156 | PL | Tuba1b | intron excision ratio | chr7:130091808:130091974 | 0.61 | 0.68 | lasso | 57 | 0.72 | 1.6e-78 | 5.1 | -5.2 | 1.6e-07 | -0.97 | 0.46 | 0.54 | FALSE |
157 | PL | Tuba1b | intron excision ratio | chr7:130092476:130093543 | 0.06 | 0.04 | blup | 1068 | 0.05 | 1.7e-04 | 5.1 | 5.1 | 3.4e-07 | 0.99 | 0.51 | 0.47 | FALSE |
158 | PL | Tuba1b | intron excision ratio | chr7:130114389:130114555 | 0.60 | 0.63 | lasso | 28 | 0.66 | 7.4e-66 | 5.2 | 5.2 | 2.0e-07 | 0.99 | 0.47 | 0.53 | FALSE |
159 | PL | Tuba1b | intron excision ratio | chr7:130115057:130116812 | 0.05 | 0.03 | blup | 1068 | 0.04 | 6.3e-04 | 5.1 | -5.1 | 2.9e-07 | -0.99 | 0.50 | 0.46 | FALSE |
160 | PL | Tmbim6 | intron excision ratio | chr7:130527799:130535190 | 0.12 | 0.01 | top1 | 1 | 0.01 | 4.9e-02 | 5.1 | 5.1 | 2.8e-07 | 0.99 | 0.04 | 0.04 | FALSE |
161 | PL | Ccdc65 | intron excision ratio | chr7:129864926:129868238 | 0.13 | 0.17 | top1 | 1 | 0.17 | 1.3e-12 | 5.1 | 5.1 | 2.8e-07 | 0.97 | 0.43 | 0.57 | FALSE |
162 | PL | Bcdin3d | mRNA stability | ENSRNOG00000058430 | 0.10 | 0.08 | blup | 1032 | 0.09 | 3.2e-07 | 5.1 | -5.3 | 1.2e-07 | -0.99 | 0.43 | 0.57 | FALSE |
h2: Heritability estimate for the given transcriptomic model. PP3: Posterior probability of two distinct causal variants. PP4: Posterior probability of a single shared causal variant. joint: Whether the RNA phenotype is in the joint model.