Hub : Traits : Tail length : ← →

chr3:121,364,624-123,489,307

Trait: Tail length

Best TWAS P=6.877956e-09 · Best GWAS P=6.300242e-10 conditioned to 0.02105176

Associated models

#	Tissue	Gene	Modality	RNA phenotype	h2	eQTL R2	model	# weights	model R2	model R2 P	eQTL GWAS Z	TWAS Z	TWAS P	Top SNP corr	PP3	PP4	joint
1	Adipose	Plcb1	alternative TSS	ENSRNOT00000098292	0.02	0.02	enet	325	0.02	1.2e-03	-5.1	-5.1	3.4e-07	0.68	0.73	0.10	FALSE
2	Adipose	Plcb4	alternative TSS	ENSRNOT00000105709	0.03	0.02	enet	89	0.02	1.9e-03	5.0	-5.2	2.5e-07	0.56	0.58	0.40	FALSE
3	Adipose	Plcb1	isoform ratio	ENSRNOT00000098292	0.02	0.02	enet	177	0.02	2.3e-03	-5.1	-5.1	2.9e-07	0.68	0.64	0.10	FALSE
4	BLA	Plcb1	alternative polyA	ENSRNOT00000051184	0.08	0.04	blup	1098	0.07	1.4e-04	-5.4	5.4	6.0e-08	-0.78	0.79	0.16	FALSE
5	BLA	Plcb1	alternative polyA	ENSRNOT00000006389	0.06	0.04	lasso	20	0.06	6.2e-04	-5.3	-5.3	9.9e-08	-0.87	0.56	0.18	FALSE
6	BLA	Plcb1	alternative polyA	ENSRNOT00000051184	0.06	0.03	blup	1098	0.05	7.9e-04	-5.4	5.4	6.9e-08	-0.77	0.72	0.15	FALSE
7	BLA	Plcb4	gene expression	ENSRNOG00000033119	0.29	0.19	enet	31	0.19	2.9e-10	5.0	-5.3	1.5e-07	0.57	0.68	0.32	FALSE
8	Brain	Plcb1	alternative polyA	ENSRNOT00000006389	0.06	0.04	top1	1	0.04	7.2e-05	-5.1	-5.1	2.7e-07	0.75	0.12	0.04	FALSE
9	Brain	Plcb1	alternative polyA	ENSRNOT00000051184	0.04	0.03	lasso	12	0.03	1.0e-03	-5.1	5.1	2.7e-07	-0.64	0.78	0.09	FALSE
10	Brain	Plcb1	alternative polyA	ENSRNOT00000006389	0.04	0.03	lasso	16	0.03	1.3e-03	-5.1	-5.1	2.7e-07	0.67	0.77	0.09	FALSE
11	Brain	Plcb1	alternative polyA	ENSRNOT00000051184	0.03	0.02	lasso	13	0.02	3.2e-03	-5.1	5.1	2.7e-07	-0.66	0.70	0.09	FALSE
12	Brain	Plcb1	gene expression	ENSRNOG00000004810	0.65	0.59	blup	1098	0.61	4.9e-72	-5.2	5.1	3.1e-07	-0.68	0.91	0.09	FALSE
13	Brain	Plcb1	intron excision ratio	chr3:122686087:122697900	0.02	0.01	blup	1098	0.02	7.7e-03	-5.0	5.6	2.7e-08	-0.80	0.62	0.21	FALSE
14	Eye	Plcb4	alternative TSS	ENSRNOT00000042853	0.51	0.13	enet	150	0.15	2.4e-03	-5.4	5.8	8.7e-09	-0.61	0.20	0.17	FALSE
15	Eye	Plcb4	alternative TSS	ENSRNOT00000105709	0.67	0.04	enet	130	0.10	1.2e-02	-5.4	-5.7	1.2e-08	0.58	0.17	0.14	FALSE
16	IL	Plcb1	gene expression	ENSRNOG00000004810	0.33	0.12	top1	1	0.12	8.0e-04	-5.1	5.1	3.1e-07	-0.77	0.06	0.05	FALSE
17	IL	Plcb4	gene expression	ENSRNOG00000033119	0.56	0.26	top1	1	0.26	5.9e-07	5.1	-5.1	2.7e-07	0.61	0.22	0.19	FALSE
18	Liver	Plcb1	gene expression	ENSRNOG00000004810	0.08	0.08	enet	49	0.10	1.1e-10	-4.9	-5.3	9.5e-08	0.78	0.91	0.09	FALSE
19	NAcc	Plcb1	isoform ratio	ENSRNOT00000006389	0.03	0.01	blup	1098	0.02	7.3e-03	-5.3	-5.7	1.1e-08	0.83	0.50	0.27	FALSE
20	NAcc	Plcb1	isoform ratio	ENSRNOT00000051184	0.03	0.01	blup	1098	0.02	9.4e-03	-5.3	5.8	7.0e-09	-0.85	0.36	0.29	FALSE
21	NAcc	Plcb1	mRNA stability	ENSRNOG00000004810	0.08	0.06	top1	1	0.06	1.7e-05	-5.2	5.2	2.3e-07	-0.77	0.15	0.05	FALSE
22	PL	Plcb4	alternative TSS	ENSRNOT00000105709	0.05	0.02	blup	1369	0.04	8.5e-04	-5.4	-5.3	1.1e-07	0.62	0.52	0.46	FALSE
23	PL	Plcb1	isoform ratio	ENSRNOT00000006389	0.06	0.05	blup	1098	0.05	1.1e-04	-5.3	-5.8	6.9e-09	0.87	0.60	0.40	TRUE
24	PL	Plcb4	intron excision ratio	chr3:123040745:123107068	0.21	0.08	enet	100	0.09	3.2e-07	4.9	-5.3	9.4e-08	0.52	0.73	0.27	FALSE

h2: Heritability estimate for the given transcriptomic model. PP3: Posterior probability of two distinct causal variants. PP4: Posterior probability of a single shared causal variant. joint: Whether the RNA phenotype is in the joint model.