Best TWAS P=1.95e-10 · Best GWAS P=3.55e-09 conditioned to 3.56e-01
Tissue | Gene | RNA modality | RNA phenotype | h2 | # weights | Model R2 | Model R2 P | TWAS Z | TWAS P | Coloc P | Joint |
---|---|---|---|---|---|---|---|---|---|---|---|
BLA | Ctsc | alternative polyA | ENSRNOT00000022342 | 0.07 | 2518 | 0.01 | 5.1e-02 | -6.35 | 2.13e-10 | 0.22 | FALSE |
BLA | Ctsc | alternative polyA | ENSRNOT00000097085 | 0.07 | 2518 | 0.02 | 3.2e-02 | 6.27 | 3.53e-10 | 0.19 | FALSE |
BLA | Ctsc | gene expression | ENSRNOG00000016496 | 0.12 | 1 | 0.1 | 5.0e-06 | 5.63 | 1.78e-08 | 0.35 | FALSE |
BLA | Ctsc | mRNA stability | ENSRNOG00000016496 | 0.05 | 1 | 0.03 | 1.5e-02 | -5.62 | 1.93e-08 | 0.04 | FALSE |
Brain | Grm5 | gene expression | ENSRNOG00000016429 | 0.16 | 6 | 0.15 | 5.3e-14 | -6.37 | 1.95e-10 | 0.7 | TRUE |
Brain | Ctsc | isoform ratio | ENSRNOT00000022342 | 0.03 | 1 | 0.04 | 1.7e-04 | -5.9 | 3.55e-09 | 0.32 | FALSE |
Eye | Ctsc | gene expression | ENSRNOG00000016496 | 0.29 | 1 | 0.15 | 2.9e-03 | 5.57 | 2.52e-08 | 0.06 | FALSE |
IL | Ctsc | gene expression | ENSRNOG00000016496 | 0.3 | 1 | 0.16 | 1.0e-04 | 5.59 | 2.31e-08 | 0.07 | FALSE |
PL | Grm5 | mRNA stability | ENSRNOG00000016429 | 0.04 | 1 | 0.03 | 1.3e-03 | 5.65 | 1.62e-08 | 0.06 | FALSE |