Best TWAS P=9.49e-09 · Best GWAS P=1.23e-08 conditioned to 1.00e+00
| Tissue | Gene | RNA modality | RNA phenotype | h2 | # weights | Model R2 | Model R2 P | TWAS Z | TWAS P | Coloc P | Joint |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Adipose | Prim1 | alternative polyA | XM_039078421.1 | 0.03 | 1 | 0.02 | 2.1e-03 | -5.7 | 1.23e-08 | 0.25 | FALSE |
| Adipose | Prim1 | alternative polyA | XM_039078422.1 | 0.03 | 1 | 0.02 | 1.5e-03 | 5.7 | 1.23e-08 | 0.31 | FALSE |
| Adipose | Rnf41 | alternative polyA | XM_006240776.4 | 0.06 | 968 | 0.03 | 4.0e-04 | -5.33 | 9.73e-08 | 0.62 | FALSE |
| Adipose | Rnf41 | alternative polyA | XM_006240776.4 | 0.06 | 968 | 0.03 | 5.9e-04 | -5.32 | 1.04e-07 | 0.6 | FALSE |
| Adipose | Dnajc14 | alternative TSS | XM_039078240.1 | 0.38 | 146 | 0.25 | 4.4e-28 | -5.2 | 1.95e-07 | 0.62 | FALSE |
| Adipose | Myl6 | alternative TSS | NM_001109484.1 | 0.03 | 1 | 0.02 | 1.8e-03 | -5.17 | 2.30e-07 | 0.04 | FALSE |
| Adipose | Myl6 | alternative TSS | XM_039079908.1 | 0.03 | 1 | 0.02 | 2.4e-03 | 5.17 | 2.30e-07 | 0.04 | FALSE |
| Adipose | Cnpy2 | gene expression | Cnpy2 | 0.27 | 156 | 0.22 | 1.4e-24 | -5.31 | 1.13e-07 | 0.7 | FALSE |
| Adipose | Dgka | gene expression | Dgka | 0.25 | 16 | 0.17 | 7.5e-19 | 5.18 | 2.20e-07 | 0.42 | FALSE |
| Adipose | Dnajc14 | gene expression | Dnajc14 | 0.53 | 393 | 0.38 | 3.4e-44 | -5.29 | 1.20e-07 | 0.67 | FALSE |
| Adipose | Il23a | gene expression | Il23a | 0.04 | 1 | 0.02 | 1.1e-03 | 5.7 | 1.23e-08 | 0.22 | FALSE |
| Adipose | LOC108350028 | gene expression | LOC108350028 | 0.32 | 1 | 0.23 | 2.4e-25 | -5.45 | 5.03e-08 | 0.93 | FALSE |
| Adipose | Smarcc2 | gene expression | Smarcc2 | 0.04 | 1044 | 0.03 | 2.1e-04 | -5.29 | 1.21e-07 | 0.62 | FALSE |
| Adipose | Timeless | gene expression | Timeless | 0.27 | 1 | 0.25 | 7.8e-28 | -5.45 | 5.03e-08 | 0.89 | TRUE |
| Adipose | Cnpy2 | isoform ratio | XM_039079902.1 | 0.61 | 279 | 0.2 | 1.2e-21 | 5.22 | 1.83e-07 | 0.69 | FALSE |
| Adipose | Dnajc14 | isoform ratio | XM_039078240.1 | 0.23 | 85 | 0.15 | 7.4e-16 | -5.21 | 1.88e-07 | 0.69 | FALSE |
| Adipose | Prim1 | isoform ratio | XM_039078421.1 | 0.03 | 1 | 0.02 | 2.6e-03 | -5.7 | 1.23e-08 | 0.25 | FALSE |
| Adipose | Rbms2 | isoform ratio | NM_001025403.1 | 0.06 | 1 | 0.04 | 2.8e-05 | -5.55 | 2.94e-08 | 0.79 | FALSE |
| Adipose | Rbms2 | isoform ratio | XR_001838668.2 | 0.07 | 1 | 0.05 | 5.6e-06 | 5.51 | 3.61e-08 | 0.89 | FALSE |
| Adipose | Rnf41 | isoform ratio | XM_039079375.1 | 0.05 | 13 | 0.02 | 8.8e-04 | 5.33 | 9.78e-08 | 0.65 | FALSE |
| Adipose | Itga7 | intron excision ratio | chr7_1368521_1369391 | 0.04 | 97 | 0.02 | 1.8e-03 | 5.23 | 1.67e-07 | 0.59 | FALSE |
| Adipose | Myl6 | intron excision ratio | chr7_910945_911978 | 0.05 | 1051 | 0.04 | 3.9e-05 | -5.31 | 1.12e-07 | 0.56 | FALSE |
| Adipose | Myl6 | intron excision ratio | chr7_911686_911978 | 0.03 | 1051 | 0.02 | 1.6e-03 | 5.3 | 1.15e-07 | 0.53 | FALSE |
| Adipose | Rbms2 | intron excision ratio | chr7_568701_568790 | 0.02 | 1 | 0.02 | 4.3e-03 | -5.34 | 9.23e-08 | 0.04 | FALSE |
| Adipose | Rbms2 | intron excision ratio | chr7_574196_576367 | 0.03 | 1 | 0.02 | 1.1e-03 | 5.34 | 9.23e-08 | 0.06 | FALSE |
| Adipose | Timeless | intron excision ratio | chr7_668828_670225 | 0.03 | 941 | 0.02 | 1.6e-03 | -5.23 | 1.70e-07 | 0.48 | FALSE |
| Adipose | Dnajc14 | mRNA stability | Dnajc14 | 0.45 | 208 | 0.28 | 4.7e-31 | 5.21 | 1.91e-07 | 0.41 | FALSE |
| Adipose | Pan2 | mRNA stability | Pan2 | 0.04 | 946 | 0.02 | 1.1e-03 | 5.32 | 1.03e-07 | 0.55 | FALSE |
| Adipose | Rdh5 | mRNA stability | Rdh5 | 0.04 | 1455 | 0.02 | 1.6e-03 | 5.2 | 1.98e-07 | 0.48 | FALSE |
| Adipose | Stat2 | mRNA stability | Stat2 | 0.09 | 1 | 0.05 | 2.8e-06 | -5.17 | 2.30e-07 | 0.55 | FALSE |
| BLA | Cnpy2 | alternative polyA | XM_039079902.1 | 0.44 | 233 | 0.34 | 6.1e-19 | 5.59 | 2.32e-08 | 0.75 | FALSE |
| BLA | Cnpy2 | alternative polyA | XM_039079903.1 | 0.43 | 73 | 0.33 | 2.6e-18 | -5.59 | 2.22e-08 | 0.74 | FALSE |
| BLA | Cnpy2 | alternative polyA | NM_001077585.1 | 0.46 | 80 | 0.35 | 8.1e-20 | -5.56 | 2.73e-08 | 0.75 | FALSE |
| BLA | Cnpy2 | alternative polyA | XM_039079902.1 | 0.45 | 19 | 0.35 | 1.9e-19 | -5.67 | 1.42e-08 | 0.74 | FALSE |
| BLA | Rnf41 | alternative polyA | XM_039079373.1 | 0.19 | 969 | 0.1 | 6.8e-06 | 5.19 | 2.16e-07 | 0.71 | FALSE |
| BLA | Zc3h10 | alternative TSS | XM_008765041.3 | 0.05 | 1050 | 0.03 | 1.3e-02 | 5.31 | 1.11e-07 | 0.43 | FALSE |
| BLA | Baz2a | gene expression | Baz2a | 0.11 | 1 | 0.09 | 1.4e-05 | 5.34 | 9.22e-08 | 0.51 | FALSE |
| BLA | Cnpy2 | gene expression | Cnpy2 | 0.36 | 44 | 0.31 | 2.3e-17 | -5.5 | 3.74e-08 | 0.74 | FALSE |
| BLA | Naca | gene expression | Naca | 0.05 | 1 | 0.05 | 8.6e-04 | -5.34 | 9.22e-08 | 0.08 | FALSE |
| BLA | Prim1 | gene expression | Prim1 | 0.71 | 25 | 0.59 | 1.9e-38 | 5.55 | 2.88e-08 | 0.8 | FALSE |
| BLA | Stat2 | gene expression | Stat2 | 0.6 | 25 | 0.63 | 2.5e-42 | -5.23 | 1.72e-07 | 0.48 | FALSE |
| BLA | Cnpy2 | isoform ratio | NM_001077585.1 | 0.45 | 80 | 0.38 | 1.7e-21 | -5.49 | 3.99e-08 | 0.67 | FALSE |
| BLA | Cnpy2 | isoform ratio | XM_039079902.1 | 0.44 | 48 | 0.41 | 1.9e-23 | 5.52 | 3.33e-08 | 0.62 | FALSE |
| BLA | Prim1 | isoform ratio | NM_001304365.2 | 0.12 | 642 | 0.08 | 6.4e-05 | -5.38 | 7.31e-08 | 0.75 | FALSE |
| BLA | Prim1 | isoform ratio | XM_039078423.1 | 0.18 | 1 | 0.18 | 4.0e-10 | -5.38 | 7.51e-08 | 0.87 | FALSE |
| BLA | Timeless | isoform ratio | XM_039079954.1 | 0.06 | 943 | 0.03 | 1.2e-02 | 5.36 | 8.52e-08 | 0.53 | FALSE |
| BLA | Prim1 | intron excision ratio | chr7_446523_447127 | 0.1 | 1 | 0.1 | 5.2e-06 | 5.34 | 9.22e-08 | 0.63 | FALSE |
| BLA | Prim1 | intron excision ratio | chr7_446523_449427 | 0.27 | 642 | 0.21 | 2.5e-11 | 5.35 | 8.79e-08 | 0.76 | FALSE |
| BLA | Rbms2 | intron excision ratio | chr7_568869_574039 | 0.08 | 1 | 0.09 | 1.9e-05 | -5.3 | 1.13e-07 | 0.34 | FALSE |
| BLA | Sarnp | intron excision ratio | chr7_1280052_1300213 | 0.11 | 1394 | 0.07 | 1.7e-04 | -5.18 | 2.26e-07 | 0.64 | FALSE |
| BLA | Stat2 | mRNA stability | Stat2 | 0.21 | 1 | 0.22 | 9.5e-12 | 5.34 | 9.22e-08 | 0.84 | FALSE |
| Brain | Cnpy2 | alternative polyA | XM_039079902.1 | 0.36 | 14 | 0.25 | 4.6e-23 | -5.18 | 2.19e-07 | 0.72 | FALSE |
| Brain | Cnpy2 | alternative polyA | XM_039079903.1 | 0.36 | 19 | 0.25 | 9.2e-23 | 5.19 | 2.15e-07 | 0.72 | FALSE |
| Brain | Cdk2 | alternative TSS | NM_199501.2 | 0.05 | 1186 | 0.02 | 8.0e-03 | -5.29 | 1.24e-07 | 0.53 | FALSE |
| Brain | Cdk2 | alternative TSS | XM_006240778.2 | 0.05 | 1 | 0.02 | 4.3e-03 | -5.2 | 1.97e-07 | 0.06 | FALSE |
| Brain | Dnajc14 | alternative TSS | XM_039078240.1 | 0.64 | 347 | 0.39 | 4.8e-38 | -5.18 | 2.16e-07 | 0.66 | FALSE |
| Brain | Atp5f1b | gene expression | Atp5f1b | 0.21 | 1 | 0.17 | 5.2e-16 | 5.24 | 1.62e-07 | 0.75 | FALSE |
| Brain | Dgka | gene expression | Dgka | 0.05 | 1 | 0.03 | 1.1e-03 | -5.2 | 1.98e-07 | 0.05 | FALSE |
| Brain | Dnajc14 | gene expression | Dnajc14 | 0.43 | 1 | 0.29 | 3.0e-27 | -5.2 | 1.99e-07 | 0.78 | FALSE |
| Brain | Myl6 | gene expression | Myl6 | 0.2 | 167 | 0.17 | 2.9e-15 | 5.25 | 1.52e-07 | 0.71 | FALSE |
| Brain | Stat2 | gene expression | Stat2 | 0.54 | 19 | 0.38 | 1.1e-36 | -5.27 | 1.38e-07 | 0.44 | FALSE |
| Brain | Timeless | gene expression | Timeless | 0.16 | 15 | 0.09 | 2.4e-08 | -5.27 | 1.36e-07 | 0.64 | FALSE |
| Brain | Tmem198b | gene expression | Tmem198b | 0.11 | 1401 | 0.05 | 1.0e-05 | 5.21 | 1.91e-07 | 0.51 | FALSE |
| Brain | Cnpy2 | isoform ratio | NM_001077585.1 | 0.34 | 100 | 0.25 | 3.9e-23 | -5.34 | 9.27e-08 | 0.71 | FALSE |
| Brain | Cnpy2 | isoform ratio | XM_039079902.1 | 0.35 | 127 | 0.27 | 8.9e-25 | 5.31 | 1.09e-07 | 0.72 | FALSE |
| Brain | Gls2 | isoform ratio | XM_039078385.1 | 0.04 | 1 | 0.01 | 1.6e-02 | -5.26 | 1.43e-07 | 0.04 | FALSE |
| Brain | Prim1 | isoform ratio | NM_001304365.2 | 0.1 | 1 | 0.07 | 7.2e-07 | 5.62 | 1.92e-08 | 0.95 | FALSE |
| Brain | Prim1 | isoform ratio | XM_039078423.1 | 0.09 | 77 | 0.07 | 8.0e-07 | -5.74 | 9.49e-09 | 0.75 | TRUE |
| Brain | Smarcc2 | isoform ratio | XM_001055738.7 | 0.03 | 1 | 0.02 | 6.9e-03 | -5.2 | 1.97e-07 | 0.04 | FALSE |
| Brain | Smarcc2 | isoform ratio | XM_006240806.4 | 0.05 | 118 | 0.02 | 2.6e-03 | -5.3 | 1.18e-07 | 0.57 | FALSE |
| Brain | Dgka | intron excision ratio | chr7_1150002_1150864 | 0.05 | 1 | 0.03 | 9.1e-04 | -5.2 | 1.97e-07 | 0.05 | FALSE |
| Brain | Prim1 | intron excision ratio | chr7_446523_449427 | 0.15 | 13 | 0.1 | 3.4e-09 | 5.37 | 7.79e-08 | 0.73 | FALSE |
| Brain | Prim1 | intron excision ratio | chr7_447284_449427 | 0.07 | 1 | 0.04 | 8.5e-05 | 5.62 | 1.92e-08 | 0.65 | FALSE |
| Brain | Sarnp | intron excision ratio | chr7_1278123_1279984 | 0.05 | 1394 | 0.02 | 3.2e-03 | -5.24 | 1.57e-07 | 0.48 | FALSE |
| Brain | Sarnp | intron excision ratio | chr7_1300302_1304963 | 0.07 | 1 | 0.02 | 4.2e-03 | -5.19 | 2.09e-07 | 0.1 | FALSE |
| Brain | Smarcc2 | intron excision ratio | chr7_902231_902576 | 0.04 | 37 | 0.01 | 3.6e-02 | -5.22 | 1.82e-07 | 0.46 | FALSE |
| Brain | Gls2 | mRNA stability | Gls2 | 0.05 | 1 | 0.02 | 1.1e-02 | 5.27 | 1.34e-07 | 0.04 | FALSE |
| Brain | Rbms2 | mRNA stability | Rbms2 | 0.11 | 1 | 0.09 | 5.4e-09 | -5.3 | 1.13e-07 | 0.78 | FALSE |
| Brain | Suox | mRNA stability | Suox | 0.06 | 1061 | 0.04 | 7.0e-05 | 5.22 | 1.83e-07 | 0.53 | FALSE |
| Eye | Myl6 | alternative TSS | NM_001109484.1 | 0.41 | 269 | 0.16 | 1.8e-03 | -5.19 | 2.07e-07 | 0.5 | FALSE |
| Eye | Nabp2 | alternative TSS | NM_001244819.1 | 0.3 | 1 | 0.06 | 3.7e-02 | 5.2 | 1.97e-07 | 0.06 | FALSE |
| Eye | Prim1 | gene expression | Prim1 | 0.67 | 1 | 0.35 | 2.7e-06 | -5.17 | 2.29e-07 | 0.08 | FALSE |
| Eye | Rdh5 | gene expression | Rdh5 | 0.38 | 329 | 0.13 | 5.4e-03 | -5.31 | 1.10e-07 | 0.34 | FALSE |
| Eye | Bloc1s1 | intron excision ratio | chr7_1348296_1350200 | 0.37 | 1 | 0.19 | 8.2e-04 | 5.2 | 1.97e-07 | 0.06 | FALSE |
| Eye | Sarnp | intron excision ratio | chr7_1300302_1304963 | 0.46 | 59 | 0.21 | 4.1e-04 | 5.3 | 1.15e-07 | 0.48 | FALSE |
| IL | Rbms2 | mRNA stability | Rbms2 | 0.19 | 875 | 0.04 | 3.5e-02 | 5.33 | 1.00e-07 | 0.25 | FALSE |
| IL | Stat2 | mRNA stability | Stat2 | 0.35 | 22 | 0.07 | 1.0e-02 | -5.21 | 1.89e-07 | 0.45 | FALSE |
| LHb | Cnpy2 | alternative polyA | XM_039079902.1 | 0.36 | 6 | 0.29 | 1.1e-07 | -5.58 | 2.45e-08 | 0.72 | FALSE |
| LHb | Cnpy2 | alternative polyA | XM_039079903.1 | 0.39 | 23 | 0.31 | 5.4e-08 | 5.48 | 4.28e-08 | 0.73 | FALSE |
| LHb | Cnpy2 | alternative polyA | NM_001077585.1 | 0.38 | 6 | 0.31 | 4.6e-08 | 5.39 | 6.96e-08 | 0.73 | TRUE |
| LHb | Cnpy2 | alternative polyA | XM_039079902.1 | 0.39 | 6 | 0.31 | 3.5e-08 | -5.41 | 6.41e-08 | 0.73 | FALSE |
| LHb | Rnf41 | alternative polyA | XM_039079373.1 | 0.4 | 52 | 0.36 | 1.8e-09 | 5.23 | 1.68e-07 | 0.69 | FALSE |
| LHb | Rnf41 | alternative polyA | XM_039079373.1 | 0.39 | 25 | 0.36 | 2.1e-09 | 5.25 | 1.52e-07 | 0.68 | FALSE |
| LHb | Myl6 | alternative TSS | XM_039079908.1 | 0.21 | 196 | 0.19 | 2.8e-05 | 5.19 | 2.11e-07 | 0.62 | FALSE |
| LHb | Dnajc14 | gene expression | Dnajc14 | 0.46 | 17 | 0.31 | 3.3e-08 | 5.19 | 2.09e-07 | 0.69 | FALSE |
| LHb | Itga7 | gene expression | Itga7 | 0.29 | 275 | 0.17 | 6.4e-05 | -5.27 | 1.33e-07 | 0.53 | FALSE |
| LHb | Ptges3 | gene expression | Ptges3 | 0.2 | 10 | 0.14 | 2.9e-04 | -5.32 | 1.01e-07 | 0.57 | FALSE |
| LHb | Rnf41 | isoform ratio | XM_039079373.1 | 0.37 | 33 | 0.3 | 6.7e-08 | 5.22 | 1.75e-07 | 0.67 | FALSE |
| LHb | Bloc1s1 | mRNA stability | Bloc1s1 | 0.39 | 329 | 0.29 | 1.6e-07 | -5.21 | 1.84e-07 | 0.59 | FALSE |
| Liver | Dnajc14 | alternative polyA | XM_039078240.1 | 0.07 | 75 | 0.04 | 1.1e-05 | 5.2 | 1.98e-07 | 0.69 | FALSE |
| Liver | Dnajc14 | alternative TSS | NM_053690.2 | 0.16 | 59 | 0.12 | 4.4e-13 | 5.27 | 1.37e-07 | 0.66 | FALSE |
| Liver | LOC120093525 | alternative TSS | XM_039080001.1 | 0.04 | 105 | 0.02 | 1.5e-03 | -5.19 | 2.07e-07 | 0.63 | FALSE |
| Liver | Prim1 | alternative TSS | XM_039078424.1 | 0.02 | 1 | 0.01 | 5.1e-02 | 5.23 | 1.67e-07 | 0.04 | FALSE |
| Liver | Apof | gene expression | Apof | 0.67 | 52 | 0.64 | 1.1e-92 | -5.33 | 9.99e-08 | 0.7 | FALSE |
| Liver | Dgka | gene expression | Dgka | 0.3 | 59 | 0.24 | 3.4e-26 | 5.23 | 1.67e-07 | 0.42 | FALSE |
| Liver | Dnajc14 | gene expression | Dnajc14 | 0.72 | 217 | 0.41 | 1.1e-48 | -5.28 | 1.27e-07 | 0.7 | FALSE |
| Liver | LOC102551925 | gene expression | LOC102551925 | 0.18 | 45 | 0.16 | 1.3e-17 | 5.24 | 1.63e-07 | 0.52 | FALSE |
| Liver | Ptges3 | gene expression | Ptges3 | 0.17 | 696 | 0.14 | 5.3e-15 | -5.33 | 9.63e-08 | 0.7 | FALSE |
| Liver | Rdh5 | gene expression | Rdh5 | 0.36 | 46 | 0.27 | 2.8e-30 | 5.18 | 2.16e-07 | 0.69 | FALSE |
| Liver | Smarcc2 | gene expression | Smarcc2 | 0.09 | 35 | 0.06 | 2.7e-07 | 5.32 | 1.05e-07 | 0.68 | FALSE |
| Liver | Stat2 | gene expression | Stat2 | 0.26 | 1 | 0.22 | 6.9e-24 | 5.28 | 1.30e-07 | 0.79 | FALSE |
| Liver | Timeless | gene expression | Timeless | 0.26 | 1 | 0.22 | 1.4e-24 | -5.32 | 1.06e-07 | 0.8 | FALSE |
| Liver | Apof | isoform ratio | NR_176857.1 | 0.13 | 8 | 0.11 | 3.2e-12 | 5.42 | 5.86e-08 | 0.5 | FALSE |
| Liver | Dnajc14 | isoform ratio | NM_053690.2 | 0.12 | 1401 | 0.08 | 2.1e-09 | -5.28 | 1.28e-07 | 0.6 | FALSE |
| Liver | Dnajc14 | isoform ratio | XM_039078240.1 | 0.28 | 43 | 0.16 | 8.3e-18 | 5.23 | 1.71e-07 | 0.68 | FALSE |
| Liver | Apof | intron excision ratio | chr7_700778_701021 | 0.55 | 945 | 0.49 | 3.8e-61 | -5.34 | 9.42e-08 | 0.68 | FALSE |
| Liver | Apof | intron excision ratio | chr7_700778_701250 | 0.5 | 26 | 0.42 | 5.6e-51 | 5.41 | 6.15e-08 | 0.69 | FALSE |
| Liver | Hsd17b6 | intron excision ratio | chr7_423005_425745 | 0.08 | 1 | 0.06 | 1.0e-07 | 5.28 | 1.30e-07 | 0.79 | FALSE |
| Liver | Stat2 | intron excision ratio | chr7_700778_701021 | 0.55 | 946 | 0.49 | 3.9e-61 | -5.34 | 9.43e-08 | 0.68 | FALSE |
| Liver | Stat2 | intron excision ratio | chr7_700778_701250 | 0.5 | 37 | 0.42 | 6.1e-51 | 5.41 | 6.15e-08 | 0.69 | FALSE |
| Liver | Apof | mRNA stability | Apof | 0.31 | 113 | 0.28 | 8.8e-31 | 5.37 | 7.74e-08 | 0.69 | FALSE |
| Liver | Coq10a | mRNA stability | Coq10a | 0.07 | 13 | 0.06 | 5.9e-07 | -5.18 | 2.19e-07 | 0.52 | FALSE |
| Liver | Erbb3 | mRNA stability | Erbb3 | 0.03 | 1 | 0.02 | 1.3e-03 | -5.24 | 1.62e-07 | 0.04 | FALSE |
| Liver | Gls2 | mRNA stability | Gls2 | 0.06 | 1 | 0.04 | 1.1e-05 | -5.33 | 1.01e-07 | 0.71 | FALSE |
| Liver | Hsd17b6 | mRNA stability | Hsd17b6 | 0.34 | 17 | 0.32 | 3.4e-36 | -5.24 | 1.64e-07 | 0.72 | FALSE |
| Liver | LOC102551925 | mRNA stability | LOC102551925 | 0.14 | 38 | 0.12 | 1.9e-13 | 5.37 | 8.03e-08 | 0.58 | FALSE |
| Liver | Prim1 | mRNA stability | Prim1 | 0.03 | 12 | 0.01 | 1.9e-02 | 5.58 | 2.47e-08 | 0.59 | FALSE |
| NAcc | Cnpy2 | alternative polyA | XM_039079902.1 | 0.34 | 144 | 0.34 | 2.0e-40 | 5.31 | 1.12e-07 | 0.75 | FALSE |
| NAcc | Cnpy2 | alternative polyA | XM_039079903.1 | 0.33 | 124 | 0.33 | 7.0e-40 | -5.29 | 1.23e-07 | 0.74 | FALSE |
| NAcc | Cnpy2 | alternative polyA | NM_001077585.1 | 0.33 | 113 | 0.34 | 3.5e-40 | -5.29 | 1.24e-07 | 0.74 | FALSE |
| NAcc | Cnpy2 | alternative polyA | XM_039079902.1 | 0.35 | 145 | 0.34 | 4.7e-41 | 5.29 | 1.21e-07 | 0.75 | FALSE |
| NAcc | Prim1 | alternative polyA | XM_039078422.1 | 0.02 | 42 | 0.02 | 2.5e-03 | 5.45 | 4.98e-08 | 0.52 | FALSE |
| NAcc | Dnajc14 | alternative TSS | XM_039078240.1 | 0.35 | 197 | 0.28 | 2.3e-32 | -5.19 | 2.05e-07 | 0.41 | TRUE |
| NAcc | Cnpy2 | gene expression | Cnpy2 | 0.42 | 62 | 0.32 | 3.2e-37 | -5.31 | 1.09e-07 | 0.76 | FALSE |
| NAcc | Dnajc14 | gene expression | Dnajc14 | 0.27 | 1 | 0.14 | 3.7e-16 | -5.2 | 1.99e-07 | 0.78 | FALSE |
| NAcc | LOC102546625 | gene expression | LOC102546625 | 0.05 | 71 | 0.05 | 1.6e-06 | 5.19 | 2.08e-07 | 0.75 | FALSE |
| NAcc | Ptges3 | gene expression | Ptges3 | 0.06 | 698 | 0.04 | 5.9e-06 | 5.33 | 9.69e-08 | 0.62 | FALSE |
| NAcc | Tmem198b | gene expression | Tmem198b | 0.04 | 1 | 0.03 | 4.3e-04 | -5.2 | 1.97e-07 | 0.15 | FALSE |
| NAcc | Cnpy2 | isoform ratio | NM_001077585.1 | 0.23 | 17 | 0.26 | 1.6e-30 | 5.51 | 3.63e-08 | 0.53 | FALSE |
| NAcc | Cnpy2 | isoform ratio | XM_039079902.1 | 0.29 | 948 | 0.34 | 3.0e-40 | -5.28 | 1.30e-07 | 0.54 | FALSE |
| NAcc | Cs | isoform ratio | XM_039078324.1 | 0.06 | 942 | 0.05 | 4.2e-06 | 5.27 | 1.36e-07 | 0.57 | FALSE |
| NAcc | Dnajc14 | isoform ratio | XM_039078240.1 | 0.17 | 1404 | 0.14 | 2.1e-16 | 5.25 | 1.54e-07 | 0.68 | FALSE |
| NAcc | Prim1 | isoform ratio | XM_039078421.1 | 0.03 | 642 | 0.02 | 3.1e-03 | 5.37 | 7.83e-08 | 0.6 | FALSE |
| NAcc | Rnf41 | isoform ratio | NM_001401067.1 | 0.02 | 55 | 0.01 | 2.7e-02 | 5.18 | 2.19e-07 | 0.46 | FALSE |
| NAcc | Prim1 | intron excision ratio | chr7_446523_449427 | 0.12 | 92 | 0.1 | 1.6e-11 | -5.26 | 1.47e-07 | 0.75 | FALSE |
| NAcc | Ikzf4 | mRNA stability | Ikzf4 | 0.09 | 1053 | 0.08 | 1.2e-09 | 5.31 | 1.07e-07 | 0.72 | FALSE |
| NAcc | Ormdl2 | mRNA stability | Ormdl2 | 0.02 | 5 | 0.01 | 8.3e-03 | 5.19 | 2.09e-07 | 0.4 | TRUE |
| OFC | Cnpy2 | alternative polyA | XM_039079902.1 | 0.33 | 16 | 0.2 | 1.6e-05 | -5.59 | 2.24e-08 | 0.57 | FALSE |
| OFC | Cnpy2 | alternative polyA | XM_039079903.1 | 0.31 | 15 | 0.21 | 1.2e-05 | 5.44 | 5.35e-08 | 0.55 | FALSE |
| OFC | Cnpy2 | alternative polyA | NM_001077585.1 | 0.33 | 18 | 0.21 | 1.2e-05 | 5.5 | 3.89e-08 | 0.56 | FALSE |
| OFC | Cnpy2 | alternative polyA | XM_039079902.1 | 0.32 | 18 | 0.21 | 1.2e-05 | -5.48 | 4.23e-08 | 0.56 | FALSE |
| OFC | Cnpy2 | gene expression | Cnpy2 | 0.58 | 72 | 0.4 | 1.1e-10 | 5.71 | 1.13e-08 | 0.66 | FALSE |
| OFC | Dnajc14 | gene expression | Dnajc14 | 0.37 | 318 | 0.18 | 5.4e-05 | -5.17 | 2.29e-07 | 0.55 | FALSE |
| OFC | Ptges3 | gene expression | Ptges3 | 0.32 | 1 | 0.18 | 3.9e-05 | -5.17 | 2.29e-07 | 0.08 | FALSE |
| OFC | Sarnp | gene expression | Sarnp | 0.28 | 233 | 0.16 | 1.2e-04 | 5.17 | 2.29e-07 | 0.55 | FALSE |
| OFC | Stat2 | gene expression | Stat2 | 0.64 | 74 | 0.43 | 1.5e-11 | 5.33 | 9.76e-08 | 0.57 | FALSE |
| OFC | Cnpy2 | isoform ratio | NM_001077585.1 | 0.3 | 948 | 0.19 | 2.6e-05 | 5.28 | 1.32e-07 | 0.58 | FALSE |
| OFC | Cnpy2 | isoform ratio | XM_039079902.1 | 0.36 | 948 | 0.24 | 2.0e-06 | -5.33 | 1.01e-07 | 0.61 | FALSE |
| OFC | Sarnp | intron excision ratio | chr7_1280052_1300213 | 0.25 | 29 | 0.14 | 2.7e-04 | -5.21 | 1.90e-07 | 0.58 | FALSE |
| OFC | Stat2 | mRNA stability | Stat2 | 0.3 | 25 | 0.2 | 1.6e-05 | -5.55 | 2.83e-08 | 0.58 | FALSE |
| PL | Cnpy2 | alternative polyA | XM_039079902.1 | 0.38 | 21 | 0.35 | 4.7e-40 | -5.28 | 1.27e-07 | 0.74 | FALSE |
| PL | Cnpy2 | alternative polyA | XM_039079903.1 | 0.39 | 21 | 0.35 | 3.0e-40 | 5.28 | 1.29e-07 | 0.74 | FALSE |
| PL | Cnpy2 | alternative polyA | NM_001077585.1 | 0.39 | 25 | 0.34 | 6.9e-39 | 5.27 | 1.37e-07 | 0.74 | FALSE |
| PL | Cnpy2 | alternative polyA | XM_039079902.1 | 0.39 | 27 | 0.35 | 2.8e-39 | -5.26 | 1.46e-07 | 0.74 | FALSE |
| PL | Prim1 | alternative TSS | NM_001304365.2 | 0.03 | 642 | 0.03 | 6.0e-04 | 5.37 | 8.03e-08 | 0.64 | FALSE |
| PL | Zc3h10 | alternative TSS | XM_008765041.3 | 0.04 | 1050 | 0.03 | 3.6e-04 | 5.26 | 1.48e-07 | 0.67 | FALSE |
| PL | Zc3h10 | alternative TSS | XM_008765041.3 | 0.04 | 1050 | 0.03 | 2.1e-04 | 5.24 | 1.57e-07 | 0.68 | FALSE |
| PL | Baz2a | gene expression | Baz2a | 0.04 | 1 | 0.05 | 8.3e-06 | 5.3 | 1.14e-07 | 0.46 | FALSE |
| PL | Bloc1s1 | gene expression | Bloc1s1 | 0.05 | 1 | 0.03 | 1.6e-04 | 5.2 | 1.99e-07 | 0.26 | FALSE |
| PL | Cnpy2 | gene expression | Cnpy2 | 0.36 | 16 | 0.33 | 1.1e-37 | 5.27 | 1.34e-07 | 0.76 | FALSE |
| PL | LOC103692757 | gene expression | LOC103692757 | 0.04 | 1054 | 0.04 | 3.1e-05 | -5.3 | 1.14e-07 | 0.59 | FALSE |
| PL | Prim1 | gene expression | Prim1 | 0.44 | 27 | 0.59 | 1.8e-80 | 5.24 | 1.58e-07 | 0.76 | FALSE |
| PL | Ptges3 | gene expression | Ptges3 | 0.05 | 7 | 0.04 | 8.2e-05 | -5.63 | 1.83e-08 | 0.7 | FALSE |
| PL | RGD1562465 | gene expression | RGD1562465 | 0.05 | 1 | 0.05 | 8.2e-06 | -5.32 | 1.05e-07 | 0.78 | FALSE |
| PL | Timeless | gene expression | Timeless | 0.15 | 7 | 0.11 | 2.4e-12 | 5.51 | 3.65e-08 | 0.74 | FALSE |
| PL | Cnpy2 | isoform ratio | NM_001077585.1 | 0.33 | 56 | 0.31 | 3.8e-34 | -5.26 | 1.42e-07 | 0.54 | FALSE |
| PL | Cnpy2 | isoform ratio | XM_039079902.1 | 0.36 | 21 | 0.35 | 1.8e-39 | 5.21 | 1.91e-07 | 0.54 | FALSE |
| PL | Cs | isoform ratio | XM_039078324.1 | 0.03 | 942 | 0.03 | 1.8e-04 | 5.24 | 1.63e-07 | 0.54 | FALSE |
| PL | Prim1 | isoform ratio | XM_039078423.1 | 0.07 | 642 | 0.06 | 5.0e-07 | 5.33 | 9.64e-08 | 0.65 | FALSE |
| PL | Smarcc2 | isoform ratio | XM_006240806.4 | 0.05 | 1045 | 0.05 | 7.0e-06 | 5.31 | 1.08e-07 | 0.61 | FALSE |
| PL | Zc3h10 | isoform ratio | XM_008765041.3 | 0.04 | 1050 | 0.03 | 8.2e-04 | 5.29 | 1.21e-07 | 0.65 | FALSE |
| PL | Prim1 | intron excision ratio | chr7_446523_449427 | 0.2 | 25 | 0.18 | 9.8e-20 | 5.21 | 1.91e-07 | 0.66 | FALSE |
| PL | Prim1 | intron excision ratio | chr7_447284_449427 | 0.04 | 642 | 0.02 | 1.2e-03 | -5.38 | 7.28e-08 | 0.7 | FALSE |
| PL | Ptges3 | intron excision ratio | chr7_503414_505463 | 0.03 | 1 | 0.03 | 6.2e-04 | 5.17 | 2.29e-07 | 0.06 | FALSE |
| PL | Rnf41 | intron excision ratio | chr7_838383_841866 | 0.04 | 969 | 0.03 | 1.0e-04 | -5.33 | 9.85e-08 | 0.62 | FALSE |
| PL | Smarcc2 | intron excision ratio | chr7_902231_902576 | 0.05 | 1045 | 0.04 | 2.7e-05 | 5.3 | 1.14e-07 | 0.62 | FALSE |
| pVTA | Dnajc14 | alternative TSS | XM_039078240.1 | 0.37 | 24 | 0.22 | 4.5e-10 | 5.18 | 2.22e-07 | 0.65 | FALSE |
| pVTA | Zc3h10 | alternative TSS | XM_039079909.1 | 0.1 | 5 | 0.06 | 2.2e-03 | -5.29 | 1.20e-07 | 0.47 | FALSE |
| pVTA | Zc3h10 | alternative TSS | XM_039079909.1 | 0.09 | 5 | 0.05 | 3.1e-03 | -5.3 | 1.15e-07 | 0.46 | FALSE |
| pVTA | Dnajc14 | gene expression | Dnajc14 | 0.41 | 1 | 0.11 | 2.2e-05 | -5.2 | 1.99e-07 | 0.16 | FALSE |
| pVTA | Myl6 | gene expression | Myl6 | 0.1 | 1052 | 0.06 | 2.2e-03 | -5.26 | 1.48e-07 | 0.56 | FALSE |
| pVTA | Naca | gene expression | Naca | 0.05 | 1 | 0.05 | 4.5e-03 | -5.24 | 1.64e-07 | 0.05 | FALSE |
| pVTA | Ptges3 | gene expression | Ptges3 | 0.12 | 1 | 0.07 | 6.9e-04 | -5.33 | 9.90e-08 | 0.07 | FALSE |
| pVTA | Timeless | gene expression | Timeless | 0.12 | 943 | 0.08 | 3.6e-04 | 5.2 | 1.94e-07 | 0.53 | FALSE |
| pVTA | Cnpy2 | isoform ratio | NM_001077585.1 | 0.36 | 948 | 0.24 | 5.6e-11 | 5.3 | 1.14e-07 | 0.72 | FALSE |
| pVTA | Cnpy2 | isoform ratio | XM_039079902.1 | 0.3 | 948 | 0.24 | 7.3e-11 | -5.34 | 9.18e-08 | 0.65 | FALSE |
| pVTA | Gls2 | isoform ratio | NM_001270786.1 | 0.11 | 885 | 0.07 | 6.9e-04 | -5.35 | 8.74e-08 | 0.55 | FALSE |
| pVTA | Prim1 | isoform ratio | NM_001304365.2 | 0.09 | 642 | 0.05 | 2.2e-03 | -5.2 | 1.99e-07 | 0.55 | FALSE |
| pVTA | Prim1 | intron excision ratio | chr7_446523_449427 | 0.11 | 642 | 0.07 | 6.2e-04 | 5.37 | 7.97e-08 | 0.63 | FALSE |
| pVTA | Ptges3 | mRNA stability | Ptges3 | 0.09 | 698 | 0.05 | 2.2e-03 | 5.31 | 1.09e-07 | 0.54 | FALSE |
| RMTg | Cnpy2 | alternative polyA | NM_001077585.1 | 0.23 | 1 | 0.09 | 2.0e-03 | -5.27 | 1.34e-07 | 0.06 | FALSE |
| RMTg | Cnpy2 | gene expression | Cnpy2 | 0.19 | 59 | 0.09 | 2.3e-03 | -5.52 | 3.42e-08 | 0.43 | FALSE |
| RMTg | LOC102556486 | gene expression | LOC102556486 | 0.18 | 1 | 0.11 | 5.9e-04 | -5.3 | 1.16e-07 | 0.08 | FALSE |
| RMTg | Ptges3 | gene expression | Ptges3 | 0.39 | 37 | 0.19 | 6.9e-06 | -5.31 | 1.09e-07 | 0.67 | FALSE |