Best TWAS P=1.756157e-07 · Best GWAS P=0.3276047 conditioned to 0.0504017
| # | Tissue | Gene | Modality | RNA phenotype | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | NAcc | NA | intron excision ratio | chr5:157445440:157447247 | 0.03 | 0.02 | enet | 134 | 0.04 | 0.00067 | -0.91 | 5.2 | 1.8e-07 | 0.18 | 0.03 | 0.02 | TRUE |
| 2 | NAcc | NA | intron excision ratio | chr5:157445440:157447247 | 0.03 | 0.02 | enet | 134 | 0.04 | 0.00067 | -0.91 | 5.2 | 1.8e-07 | 0.18 | 0.03 | 0.02 | FALSE |
h2: Heritability estimate for the given transcriptomic model. PP3: Posterior probability of two distinct causal variants. PP4: Posterior probability of a single shared causal variant. joint: Whether the RNA phenotype is in the joint model.