Hub : Traits : tautz: manual_spc7 : ←

chr9:14,884,566-16,906,451

Best TWAS P=1.592055e-09 · Best GWAS P=2.777223e-10 conditioned to 0.02945335

Associated models

#	Tissue	Gene	Modality	RNA phenotype	h2	eQTL R2	model	# weights	model R2	model R2 P	eQTL GWAS Z	TWAS Z	TWAS P	Top SNP corr	PP3	PP4	joint
1	Adipose	Supt3h	alternative polyA	ENSRNOT00000097089	0.05	0.05	enet	37	0.06	6.4e-07	-5.7	5.7	9.1e-09	-0.85	0.55	0.44	FALSE
2	Adipose	Supt3h	isoform ratio	ENSRNOT00000097089	0.07	0.06	blup	1700	0.06	1.9e-07	-5.7	6.0	1.7e-09	-0.87	0.45	0.55	FALSE
3	Brain	Supt3h	gene expression	ENSRNOG00000020153	0.05	0.01	blup	1704	0.03	4.4e-04	-6.3	-6.0	1.6e-09	0.86	0.25	0.70	TRUE
4	Liver	Slc29a1	gene expression	ENSRNOG00000019752	0.08	0.04	blup	1996	0.05	2.3e-06	-3.8	5.2	1.7e-07	-0.66	0.42	0.58	FALSE
5	Liver	Supt3h	gene expression	ENSRNOG00000020153	0.03	0.02	top1	1	0.02	2.8e-03	-5.7	5.7	1.2e-08	-0.84	0.05	0.03	FALSE

h2: Heritability estimate for the given transcriptomic model. PP3: Posterior probability of two distinct causal variants. PP4: Posterior probability of a single shared causal variant. joint: Whether the RNA phenotype is in the joint model.