Best TWAS P = 1.07e-08 · Best GWAS P= 8.38e-09 conditioned to 1e+00
| Tissue | Gene | RNA modality | RNA phenotype | h2 | # weights | Model R2 | Model R2 P | TWAS Z | TWAS P | Coloc P | Joint |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Adipose | Sdhb | gene expression | Sdhb | 0.13 | 10 | 0.12 | 3.8e-13 | -5.33 | 9.63e-08 | 0.76 | FALSE |
| BLA | Necap2 | alternative polyA | XM_063287473.1 | 0.29 | 30 | 0.22 | 4.3e-12 | 5.4 | 6.70e-08 | 0.9 | FALSE |
| BLA | Necap2 | isoform ratio | XM_063287473.1 | 0.22 | 18 | 0.18 | 1.3e-09 | 5.41 | 6.14e-08 | 0.86 | FALSE |
| IC | Padi2 | gene expression | Padi2 | 0.6 | 16 | 0.52 | 3.9e-25 | 5.27 | 1.35e-07 | 0.47 | FALSE |
| IC | Crocc | intron excision ratio | chr5_158642368_158644151 | 0.16 | 3076 | 0.11 | 3.1e-05 | 5.37 | 7.94e-08 | 0.54 | FALSE |
| IL | Padi2 | gene expression | Padi2 | 0.51 | 7 | 0.17 | 9.0e-05 | 5.56 | 2.70e-08 | 0.67 | FALSE |
| LHb | Padi2 | gene expression | Padi2 | 0.54 | 3172 | 0.18 | 4.6e-05 | 5.23 | 1.70e-07 | 0.58 | FALSE |
| Liver | Crocc | gene expression | Crocc | 0.08 | 3076 | 0.04 | 5.2e-05 | 5.29 | 1.20e-07 | 0.62 | FALSE |
| Liver | Sdhb | gene expression | Sdhb | 0.14 | 1 | 0.09 | 2.8e-10 | -5.48 | 4.33e-08 | 0.8 | FALSE |
| NAcc | Arhgef19 | alternative polyA | NM_001108692.1 | 0.04 | 16 | 0.03 | 1.3e-05 | 5.22 | 1.76e-07 | 0.04 | FALSE |
| NAcc | Necap2 | alternative polyA | NM_001399090.1 | 0.13 | 20 | 0.14 | 5.6e-21 | -5.72 | 1.07e-08 | 0.88 | TRUE |
| NAcc | Sdhb | gene expression | Sdhb | 0.09 | 1 | 0.06 | 1.0e-09 | -5.62 | 1.95e-08 | 0.9 | FALSE |
| OFC | Padi2 | gene expression | Padi2 | 0.3 | 1 | 0.23 | 3.0e-06 | 5.64 | 1.68e-08 | 0.28 | TRUE |
| PL | Padi2 | gene expression | Padi2 | 0.53 | 3172 | 0.44 | 3.8e-52 | 5.34 | 9.45e-08 | 0.44 | FALSE |
| pVTA | Fbxo42 | mRNA stability | Fbxo42 | 0.13 | 2865 | 0.15 | 5.0e-12 | 5.36 | 8.13e-08 | 0.48 | FALSE |
| RMTg | Sdhb | gene expression | Sdhb | 0.25 | 3204 | 0.14 | 1.8e-04 | -5.39 | 6.90e-08 | 0.63 | FALSE |